Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014956

Physical Location & Seq

Genomic Coordinates Reverse (-)

7994319 .. 7995883

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCTGATGGGCAGCCAAAGCTCCCTGTCTTAGATTTCTCTAAGGAAGCTGAAGCTCTGAAGCCTGGCACCAACTCATGGGTATCGGCATGCAAAGATGTTCGACAAGCACTTGAAGAGTTCGGCTGTTTTTTCGTATCGTATGACAAACTCCCTCCGGAGTTTCAAAATGGTTTTTTGGGTACTCTAAAAGAATTATTTGATCTCCCTACTCAGACCAAAATGACAAACAAATCTGAAAATCCCTCAAGTGGGTATTTTGGACAAATTCCCAGCCTTCCCCTCCATGAAGGCTTGGGCATTGAGAATGCAACAAATTTAGAGGAGACTCAAAAGTTCACAAAGCTCATGTGGCCTGGTGGAAATGATAATTTCTGTGAAAGTGCACATTCGTTTGCAAAAGTGGCAGAGGAGTTGGACCAAATGGTGACTAGAATGATATTTGAGAGCTATGGTATGGAGAAGTATTATGACTCCTATGTTGGGTCCGTCTCCTATCTTCTTCGACTCTTGAAAAATAGAACACCCCAAGAAAATGAGCCTAGCCTTGGCTTCGTGGCTCATACTGACAAGAGCTTCACAACCCTACTTTATCAGAATAACCAAGCCCATGGTCTGGAGGTTGAAACTAAAAGCCACGAATGGATTAGGGCTGAGTTTCCACCTTCATCCTTTCTAGTCATGGCCGGTGATGCACTAATGGCATGGAGCAATGACAGAATATTATCTCCCAACCATCGAGTTATTATGAATGGGAATGAAGCAAGATACTCTCTGGCGCAATTTGCATTTAGTGACGGCGAGATACATGTGCCGGAAGAGCTTGCTGATGAACAACACCCCTTACGCTACAAGTCGTTTGATCATCCTGGACTGCTAGTTTTCTTTCGCACTAATGAGAGCTATGTTTCAAACAGTGCTATAAAAGCCTATTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.52

Weight (kDa)

5.05

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52790
fragaria_vesca	FvH4_6g30751 FvH4_6g30751
malus_domestica	MD17G1200700.v1.1
prunus_persica	Prupe.3G076300_v2.0.a1 Prupe.4G141200_v2.0.a1
pyrus_communis	pycom17g20420 pycom17g20470
rosa_chinensis	RchiOBHm_Chr2g0137171
rosa_laevigata	RLG00000019630
rosa_multiflora	Rmu_sc0000894.1_g000049
rosa_roxburghii	Rroxscaffold_2G00107420
rosa_rugosa	Rorug02G0339500
rosa_samantha	Rh2CG375200 Rh2DG410700
rosa_wichuraiana	Rw2G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccB7I	CCANNNNNTGG	2 cut(s)	81, 619
AccIII	TCCGGA	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	2 cut(s)	270, 319
AcuI	CTGAAG	2 cut(s)	75, 83
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	6 cut(s)	81, 254, 255, 486, 551, 619
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	5 cut(s)	119, 170, 517, 629, 915
AjnI	CCWGG	3 cut(s)	67, 358, 871
AluBI	AGCT	8 cut(s)	25, 53, 59, 349, 453, 579, 826, 906
AluI	AGCT	8 cut(s)	25, 53, 59, 349, 453, 579, 826, 906
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	323, 499
Alw44I	GTGCAC	1 cut(s)	387
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	2 cut(s)	356, 687
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	2 cut(s)	270, 319
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	2 cut(s)	421, 489
AsuHPI	GGTGA	2 cut(s)	442, 704
AvaII	GGWCC	2 cut(s)	421, 489
BaeGI	GKGCMC	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	5, 747
BceAI	ACGGC	1 cut(s)	817
BciT130I	CCWGG	3 cut(s)	69, 360, 873
BclI	TGATCA	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	323, 499
BfaI	CTAG	4 cut(s)	435, 546, 680, 881
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	3 cut(s)	69, 360, 873
Bme18I	GGWCC	2 cut(s)	421, 489
BmgT120I	GGNCC	2 cut(s)	421, 489
BmiI	GGNNCC	2 cut(s)	73, 490
BmrFI	CCNGG	3 cut(s)	69, 360, 873
BmsI	GCATC	1 cut(s)	685
BpmI	CTGGAG	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	550, 613
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	6 cut(s)	81, 254, 255, 486, 551, 619
Bse118I	RCCGGY	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	721
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	3 cut(s)	69, 360, 873
BseDI	CCNNGG	2 cut(s)	550, 613
BseGI	GGATG	2 cut(s)	671, 868
BseLI	CCNNNNNNNGG	6 cut(s)	81, 254, 255, 486, 551, 619
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	230, 648
BseRI	GAGGAG	2 cut(s)	341, 428
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	358, 689
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	3 cut(s)	161, 690, 818
BslI	CCNNNNNNNGG	6 cut(s)	81, 254, 255, 486, 551, 619
BsmAI	GTCTC	2 cut(s)	323, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	358, 689
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	205, 865
Bsp19I	CCATGG	1 cut(s)	613
BspANI	GGCC	2 cut(s)	358, 689
BspCNI	CTCAG	2 cut(s)	229, 649
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	73, 490
BspQI	GCTCTTC	1 cut(s)	816
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	721
BsrFI	RCCGGY	1 cut(s)	689
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	550, 613
BssMI	GATC	2 cut(s)	205, 865
BssT1I	CCWWGG	2 cut(s)	550, 613
Bst2UI	CCWGG	3 cut(s)	69, 360, 873
Bst4CI	ACNGT	1 cut(s)	920
Bst6I	CTCTTC	2 cut(s)	114, 816
BstC8I	GCNNGC	2 cut(s)	94, 828
BstDEI	CTNAG	4 cut(s)	34, 45, 216, 657
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	671, 868
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	2 cut(s)	208, 868
BstMAI	GTCTC	2 cut(s)	323, 499
BstMBI	GATC	2 cut(s)	205, 865
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 355, 407, 695, 704, 788, 823, 929
BstNI	CCWGG	3 cut(s)	69, 360, 873
BstNSI	RCATGY	2 cut(s)	96, 815
BstSCI	CCNGG	3 cut(s)	67, 358, 871
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	614
BsuRI	GGCC	2 cut(s)	358, 689
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	671, 868
BtsIMutI	CAGTG	1 cut(s)	925
Cac8I	GCNNGC	2 cut(s)	94, 828
CfoI	GCGC	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	421, 489
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	8 cut(s)	81, 93, 290, 352, 614, 685, 708, 812
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	4 cut(s)	34, 45, 216, 657
DpnI	GATC	2 cut(s)	207, 867
DpnII	GATC	2 cut(s)	205, 865
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	2 cut(s)	114, 816
EarI	CTCTTC	2 cut(s)	114, 816
Eco130I	CCWWGG	2 cut(s)	550, 613
Eco47I	GGWCC	2 cut(s)	421, 489
Eco57I	CTGAAG	2 cut(s)	75, 83
EcoRII	CCWGG	3 cut(s)	67, 358, 871
EcoT14I	CCWWGG	2 cut(s)	550, 613
ErhI	CCWWGG	2 cut(s)	550, 613
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	8 cut(s)	84, 96, 293, 355, 617, 688, 711, 815
FatI	CATG	8 cut(s)	80, 92, 289, 351, 613, 684, 707, 811
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	2 cut(s)	658, 855
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	4 cut(s)	435, 546, 680, 881
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	641
HaeIII	GGCC	2 cut(s)	358, 689
HapII	CCGG	3 cut(s)	161, 690, 818
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	8 cut(s)	84, 96, 293, 355, 617, 688, 711, 815
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HinfI	GANTC	3 cut(s)	331, 476, 510
HpaII	CCGG	3 cut(s)	161, 690, 818
HphI	GGTGA	2 cut(s)	442, 704
Hpy166II	GTNNAC	2 cut(s)	342, 389
Hpy188I	TCNGA	5 cut(s)	10, 63, 219, 241, 600
Hpy188III	TCNNGA	3 cut(s)	161, 514, 620
Hpy8I	GTNNAC	2 cut(s)	342, 389
HpyAV	CCTTC	3 cut(s)	287, 290, 678
HpyCH4III	ACNGT	1 cut(s)	920
HpyCH4V	TGCA	6 cut(s)	96, 314, 389, 401, 698, 791
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 355, 407, 695, 704, 788, 823, 929
HpyF3I	CTNAG	4 cut(s)	34, 45, 216, 657
Hsp92II	CATG	8 cut(s)	84, 96, 293, 355, 617, 688, 711, 815
HspAI	GCGC	1 cut(s)	782
Kpn2I	TCCGGA	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	2 cut(s)	205, 865
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	2 cut(s)	30, 711
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	4 cut(s)	435, 546, 680, 881
MaeIII	GTNAC	2 cut(s)	430, 797
MalI	GATC	2 cut(s)	207, 867
MboI	GATC	2 cut(s)	205, 865
MboII	GAAGA	4 cut(s)	131, 494, 497, 833
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	5 cut(s)	197, 270, 319, 373, 785
MlyI	GAGTC	3 cut(s)	325, 470, 504
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	6 cut(s)	168, 259, 296, 319, 406, 616
MroI	TCCGGA	1 cut(s)	160
MspI	CCGG	3 cut(s)	161, 690, 818
MspR9I	CCNGG	3 cut(s)	69, 360, 873
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	3 cut(s)	69, 360, 873
MwoI	GCNNNNNNNGC	8 cut(s)	22, 355, 407, 695, 704, 788, 823, 929
NcoI	CCATGG	1 cut(s)	613
NdeII	GATC	2 cut(s)	205, 865
NlaIII	CATG	8 cut(s)	84, 96, 293, 355, 617, 688, 711, 815
NlaIV	GGNNCC	2 cut(s)	73, 490
NmuCI	GTSAC	2 cut(s)	430, 797
NspI	RCATGY	2 cut(s)	96, 815
PaeI	GCATGC	1 cut(s)	96
PciI	ACATGT	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	816
PctI	GAATGC	1 cut(s)	316
PflMI	CCANNNNNTGG	2 cut(s)	81, 619
PfoI	TCCNGGA	1 cut(s)	871
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	3 cut(s)	325, 470, 504
PpsI	GAGTC	3 cut(s)	325, 470, 504
PscI	ACATGT	1 cut(s)	811
Psp6I	CCWGG	3 cut(s)	67, 358, 871
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	3 cut(s)	67, 358, 871
PspN4I	GGNNCC	2 cut(s)	73, 490
PspPI	GGNCC	2 cut(s)	421, 489
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	816
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	205, 865
Sau96I	GGNCC	2 cut(s)	421, 489
SchI	GAGTC	3 cut(s)	325, 470, 504
ScrFI	CCNGG	3 cut(s)	69, 360, 873
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	1 cut(s)	685
SinI	GGWCC	2 cut(s)	421, 489
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SphI	GCATGC	1 cut(s)	96
Sse9I	AATT	5 cut(s)	197, 270, 319, 373, 785
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	4 cut(s)	435, 546, 680, 881
StyD4I	CCNGG	3 cut(s)	67, 358, 871
StyI	CCWWGG	2 cut(s)	550, 613
TaaI	ACNGT	1 cut(s)	920
TaqI	TCGA	3 cut(s)	106, 508, 742
TasI	AATT	5 cut(s)	197, 270, 319, 373, 785
TscAI	CASTG	1 cut(s)	925
TseFI	GTSAC	2 cut(s)	430, 797
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	2 cut(s)	430, 797
TspDTI	ATGAA	5 cut(s)	306, 660, 767, 777, 849
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	1 cut(s)	925
Van91I	CCANNNNNTGG	2 cut(s)	81, 619
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	421, 489
XapI	RAATTY	2 cut(s)	270, 319
XceI	RCATGY	2 cut(s)	96, 815
XspI	CTAG	4 cut(s)	435, 546, 680, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.