Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014956

Physical Location & Seq

Genomic Coordinates Reverse (-)

5606300 .. 5608005

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G076300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGTTCTGAAGGCCAGCCAAAGCTCCCTGTCTTAGATTTCTCTAAGGAAGCTCTTAAGCCTGGCACCAACCCATGGCTATCGGTATGCAAAGATGTTCGACAAGCACTTGAAGAATTTGGCTGTTTCGTAGCATTGTATGACAAAATCTCTCCGGAATTTCGAAATGCGTTTTTGGGTGCTCTACAAGAATTATTTGATCTCCCTACTCGGACCAAAATGACAAACAAATATGAAAAGCCTTTAAATGGGTATGTTGGACAAATTCCCAAGCTTCCTCTCCATGAAAGCTTGGGCATTGACAATGCAACAAATTTGGAAGAGACTCAAAAGTTCACAAAGCTCATGTGGCCTGGTGGAAATGATAAGTTCTGTGAAAGTGCATATTCGTTTGCAAAAGTGGCAGAGGAGTTGGACCAAATGGTGACTAGAATGATATTTGAGAGCTATGGGGTGGAGAAGTACTATGAATCTTATGTTGGGTCTATCTCCTATCTTCTTCGACTCTTGAAAAATAGATCACCCCAAGAAAATGAGCCTAGCCTTGGCTTCGTGGCACATACTGACAAGAGCTTCACAACCATACTTTATCAGAATAACCATGTAAATGCTCTGGAGGTTGAAACAAGAAGCCATGAATGGATTAGGGTTGAGTTTCCACCTTCATCCTTCATAGTCATGGCCGGTGATGCACTAATGGCATGGAGCAATGACAGAATATTATCTCCCAACCATCGAGTTATTATGAGTGGGAATGAAACAAGATACTCCCTGGCACAATTTTCATTTAGTGACGGAGAGATACATGTGCCCGAAGAGCTTGCCGATGAAGAACACCCCTTACGCTACAAGTCGTTCGATCATCCTGGTCTGCTACGTTTCTTTCGCAATGATGATCGTTTTAACTCAAACAGTGCTATAAAAGCCTACTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

314

Amino Acids

35.77

Weight (kDa)

5.38

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52790
fragaria_vesca	FvH4_6g30751 FvH4_6g30751
malus_domestica	MD17G1200700.v1.1
prunus_persica	Prupe.3G076300_v2.0.a1 Prupe.4G141200_v2.0.a1
pyrus_communis	pycom17g20420 pycom17g20470
rosa_chinensis	RchiOBHm_Chr2g0137171
rosa_laevigata	RLG00000019630
rosa_multiflora	Rmu_sc0000894.1_g000049
rosa_roxburghii	Rroxscaffold_2G00107420
rosa_rugosa	Rorug02G0339500
rosa_samantha	Rh2CG375200 Rh2DG410700
rosa_wichuraiana	Rw2G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	4 cut(s)	116, 158, 264, 313
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	75, 248, 545
AflII	CTTAAG	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	3 cut(s)	113, 511, 623
AjnI	CCWGG	4 cut(s)	61, 352, 771, 865
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	8 cut(s)	25, 53, 274, 291, 343, 447, 573, 820
AluI	AGCT	8 cut(s)	25, 53, 274, 291, 343, 447, 573, 820
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	3 cut(s)	13, 350, 681
ApoI	RAATTY	4 cut(s)	116, 158, 264, 313
AspS9I	GGNCC	2 cut(s)	213, 415
AsuHPI	GGTGA	3 cut(s)	436, 513, 698
AsuII	TTCGAA	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	213, 415
BaeGI	GKGCMC	1 cut(s)	813
BanI	GGYRCC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	1 cut(s)	741
BcgI	CGANNNNNNTGC	2 cut(s)	803, 837
BciT130I	CCWGG	4 cut(s)	63, 354, 773, 867
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	429, 540
BfrI	CTTAAG	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	4 cut(s)	63, 354, 773, 867
Bme18I	GGWCC	2 cut(s)	213, 415
BmgT120I	GGNCC	2 cut(s)	213, 415
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	4 cut(s)	63, 354, 773, 867
BmsI	GCATC	1 cut(s)	679
BpmI	CTGGAG	1 cut(s)	635
Bpu14I	TTCGAA	1 cut(s)	163
BsaJI	CCNNGG	3 cut(s)	74, 544, 771
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 248, 545
Bse118I	RCCGGY	1 cut(s)	683
Bse3DI	GCAATG	2 cut(s)	715, 895
BseAI	TCCGGA	1 cut(s)	154
BseBI	CCWGG	4 cut(s)	63, 354, 773, 867
BseDI	CCNNGG	3 cut(s)	74, 544, 771
BseGI	GGATG	2 cut(s)	665, 862
BseLI	CCNNNNNNNGG	3 cut(s)	75, 248, 545
BseMI	GCAATG	2 cut(s)	715, 895
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	813
BshFI	GGCC	3 cut(s)	15, 352, 683
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	155, 684
BslI	CCNNNNNNNGG	3 cut(s)	75, 248, 545
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	15, 352, 683
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	184, 813
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	199, 518, 859, 895
Bsp19I	CCATGG	1 cut(s)	74
BspANI	GGCC	3 cut(s)	15, 352, 683
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	715, 895
BsrFI	RCCGGY	1 cut(s)	683
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	3 cut(s)	74, 544, 771
BssMI	GATC	4 cut(s)	199, 518, 859, 895
BssT1I	CCWWGG	2 cut(s)	74, 544
Bst2UI	CCWGG	4 cut(s)	63, 354, 773, 867
Bst4CI	ACNGT	2 cut(s)	914, 932
Bst6I	CTCTTC	2 cut(s)	315, 810
BstAFI	CTTAAG	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	17, 822
BstDEI	CTNAG	2 cut(s)	34, 45
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	665, 862
BstKTI	GATC	4 cut(s)	202, 521, 862, 898
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	4 cut(s)	199, 518, 859, 895
BstMWI	GCNNNNNNNGC	6 cut(s)	349, 401, 689, 698, 817, 923
BstNI	CCWGG	4 cut(s)	63, 354, 773, 867
BstNSI	RCATGY	1 cut(s)	809
BstSCI	CCNGG	4 cut(s)	61, 352, 771, 865
BstSLI	GKGCMC	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	15, 352, 683
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	665, 862
BtsIMutI	CAGTG	1 cut(s)	919
Cac8I	GCNNGC	2 cut(s)	17, 822
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	213, 415
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	8 cut(s)	75, 284, 346, 602, 635, 679, 702, 806
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	2 cut(s)	34, 45
DpnI	GATC	4 cut(s)	201, 520, 861, 897
DpnII	GATC	4 cut(s)	199, 518, 859, 895
DraI	TTTAAA	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	2 cut(s)	315, 810
EarI	CTCTTC	2 cut(s)	315, 810
Eco130I	CCWWGG	2 cut(s)	74, 544
Eco47I	GGWCC	2 cut(s)	213, 415
Eco57I	CTGAAG	1 cut(s)	30
EcoRII	CCWGG	4 cut(s)	61, 352, 771, 865
EcoT14I	CCWWGG	2 cut(s)	74, 544
ErhI	CCWWGG	2 cut(s)	74, 544
FaeI	CATG	8 cut(s)	78, 287, 349, 605, 638, 682, 705, 809
FatI	CATG	8 cut(s)	74, 283, 345, 601, 634, 678, 701, 805
FokI	GGATG	2 cut(s)	652, 849
FspBI	CTAG	2 cut(s)	429, 540
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	3 cut(s)	15, 352, 683
HapII	CCGG	2 cut(s)	155, 684
Hin1II	CATG	8 cut(s)	78, 287, 349, 605, 638, 682, 705, 809
HindIII	AAGCTT	2 cut(s)	272, 289
HinfI	GANTC	3 cut(s)	325, 470, 504
HpaII	CCGG	2 cut(s)	155, 684
HphI	GGTGA	3 cut(s)	436, 513, 698
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	3 cut(s)	10, 213, 594
Hpy188III	TCNNGA	3 cut(s)	155, 508, 614
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	3 cut(s)	5, 672, 679
HpyCH4III	ACNGT	2 cut(s)	914, 932
HpyCH4IV	ACGT	1 cut(s)	877
HpyCH4V	TGCA	5 cut(s)	90, 308, 383, 395, 692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	349, 401, 689, 698, 817, 923
HpyF3I	CTNAG	2 cut(s)	34, 45
HpySE526I	ACGT	1 cut(s)	877
Hsp92II	CATG	8 cut(s)	78, 287, 349, 605, 638, 682, 705, 809
Kpn2I	TCCGGA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	199, 518, 859, 895
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	2 cut(s)	30, 705
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	2 cut(s)	429, 540
MaeII	ACGT	1 cut(s)	877
MaeIII	GTNAC	2 cut(s)	424, 791
MalI	GATC	4 cut(s)	201, 520, 861, 897
MboI	GATC	4 cut(s)	199, 518, 859, 895
MboII	GAAGA	6 cut(s)	125, 332, 488, 491, 827, 842
MhlI	GDGCHC	2 cut(s)	184, 813
MluCI	AATT	6 cut(s)	116, 158, 191, 264, 313, 779
MlyI	GAGTC	2 cut(s)	319, 498
MmeI	TCCRAC	2 cut(s)	238, 393
MnlI	CCTC	3 cut(s)	288, 400, 610
MroI	TCCGGA	1 cut(s)	154
MseI	TTAA	3 cut(s)	57, 245, 903
MslI	CAYNNNNRTG	2 cut(s)	606, 677
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	2 cut(s)	155, 684
MspR9I	CCNGG	4 cut(s)	63, 354, 773, 867
MvaI	CCWGG	4 cut(s)	63, 354, 773, 867
MwoI	GCNNNNNNNGC	6 cut(s)	349, 401, 689, 698, 817, 923
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	4 cut(s)	199, 518, 859, 895
NlaIII	CATG	8 cut(s)	78, 287, 349, 605, 638, 682, 705, 809
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	424, 791
NspI	RCATGY	1 cut(s)	809
NspV	TTCGAA	1 cut(s)	163
PciI	ACATGT	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	470
PflMI	CCANNNNNTGG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	319, 498
PpsI	GAGTC	2 cut(s)	319, 498
PscI	ACATGT	1 cut(s)	805
Psp6I	CCWGG	4 cut(s)	61, 352, 771, 865
PspGI	CCWGG	4 cut(s)	61, 352, 771, 865
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	213, 415
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	606, 677
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	57, 245, 903
Sau3AI	GATC	4 cut(s)	199, 518, 859, 895
Sau96I	GGNCC	2 cut(s)	213, 415
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	2 cut(s)	319, 498
ScrFI	CCNGG	4 cut(s)	63, 354, 773, 867
SduI	GDGCHC	2 cut(s)	184, 813
SfaNI	GCATC	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	2 cut(s)	213, 415
SmiMI	CAYNNNNRTG	2 cut(s)	606, 677
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	6 cut(s)	116, 158, 191, 264, 313, 779
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	2 cut(s)	429, 540
StyD4I	CCNGG	4 cut(s)	61, 352, 771, 865
StyI	CCWWGG	2 cut(s)	74, 544
TaaI	ACNGT	2 cut(s)	914, 932
TaiI	ACGT	1 cut(s)	880
TaqI	TCGA	5 cut(s)	100, 163, 502, 736, 858
TasI	AATT	6 cut(s)	116, 158, 191, 264, 313, 779
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	3 cut(s)	57, 245, 903
Tru9I	TTAA	3 cut(s)	57, 245, 903
TscAI	CASTG	1 cut(s)	919
TseFI	GTSAC	2 cut(s)	424, 791
Tsp45I	GTSAC	2 cut(s)	424, 791
TspDTI	ATGAA	9 cut(s)	249, 300, 483, 651, 654, 661, 771, 774, 843
TspGWI	ACGGA	1 cut(s)	810
TspRI	CASTG	1 cut(s)	919
Van91I	CCANNNNNTGG	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	213, 415
XapI	RAATTY	4 cut(s)	116, 158, 264, 313
XceI	RCATGY	1 cut(s)	809
XspI	CTAG	2 cut(s)	429, 540
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.