Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014956

Physical Location & Seq

Genomic Coordinates Forward (+)

59577737 .. 59578964

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG410700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTTCTGATCATCATCAAGTGCCCCCAAAGCTTCCAGTCCTAGATTTCTCAAACAAGGAAACTCTGAAGCCTGGCACCAACTCATGGCAATCCTCACGCAAAGATGTTCAACAAGCACTCGAAGAATTTGGCTGCTTTGTAGTTTTGTACGACAGAATCTCTCCGGACTTTCGCAATTCTCTTTTGGCTACTCTGCAAGAGTTGTTTGATCTCCCTACCGAAACTAAAATGACAAACAAATACGAGGCTAAGCCCTTAAATGGGTATGTTGGGCAAATTCCCAAACTCCCTCTCCATGAAAGCATGGGCATCGACAATGCAACTTCTCTGGAGGAAACTCAGAGATTCACAGAGCTCATGTGGCCTGGTGGAAATGATAACTTTTGTGAAAATGCATATTCGTTTGCAAAAGTAGCAGAAGAGTTGGATAAAATGGTGACTAGAATGATATTTGAGAGCTATGGCGTGGAGAAGTGTTATGACTCTTATGTTGGGTCCATCAGTTATCTTCTTCGACTGTTAAAAAACAAATTGCCTCGAGAAAACCAACATAATCTTGGCTTCGTCCCTCACACTGACAAGAGCTTCACAACCATACTCTATCAGAACAATCAGGTTCATGCTTTGGAGGTTGAAACAAGAAACCATGAATGGTTTAGGGTTGAGTTTCCACCTTCATCCTTTGTAGTCATGGCGGGTGATGCACTAATGGCATGGAGTAATGACAGAATATTTTCTCCGAACCACCGAGTTGTAATGAGCACTGGGAATGAAAACGAAGCAAGATACTCTATGGCACAATTTGCATTTTGCAATGGCGAGATACGAGTGCCTGATGAGCTTGTTGATGGCGAACACCCCTTACGCTACAAGCCTTTTGATCATCCCGGGTTACTGCGTTTCTTTCGTACTGCTGAAGACAACTCGAACTCTGCTATAAAAGCCTATTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

320

Amino Acids

36.67

Weight (kDa)

5.42

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 92	7.3e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	180 - 269	1.1e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52790
fragaria_vesca	FvH4_6g30751 FvH4_6g30751
malus_domestica	MD17G1200700.v1.1
prunus_persica	Prupe.3G076300_v2.0.a1 Prupe.4G141200_v2.0.a1
pyrus_communis	pycom17g20420 pycom17g20470
rosa_chinensis	RchiOBHm_Chr2g0137171
rosa_laevigata	RLG00000019630
rosa_multiflora	Rmu_sc0000894.1_g000049
rosa_roxburghii	Rroxscaffold_2G00107420
rosa_rugosa	Rorug02G0339500
rosa_samantha	Rh2CG375200 Rh2DG410700
rosa_wichuraiana	Rw2G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	698
AcsI	RAATTY	2 cut(s)	128, 279
AcuI	CTGAAG	2 cut(s)	89, 939
AfaI	GTAC	2 cut(s)	152, 913
AfiI	CCNNNNNNNGG	3 cut(s)	87, 263, 264
AgsI	TTSAA	2 cut(s)	113, 638
AjnI	CCWGG	2 cut(s)	73, 367
AluBI	AGCT	5 cut(s)	34, 358, 462, 588, 844
AluI	AGCT	5 cut(s)	34, 358, 462, 588, 844
Alw21I	GWGCWC	2 cut(s)	360, 767
Ama87I	CYCGRG	2 cut(s)	540, 890
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	2 cut(s)	128, 279
Asp700I	GAANNNNTTC	1 cut(s)	736
AspS9I	GGNCC	1 cut(s)	498
AsuC2I	CCSGG	2 cut(s)	891, 892
AsuHPI	GGTGA	2 cut(s)	451, 713
AvaI	CYCGRG	2 cut(s)	540, 890
AvaII	GGWCC	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	927
Bbv12I	GWGCWC	2 cut(s)	360, 767
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	2 cut(s)	509, 845
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	2 cut(s)	75, 369
BclI	TGATCA	2 cut(s)	10, 883
BcnI	CCSGG	2 cut(s)	891, 892
BfaI	CTAG	2 cut(s)	44, 444
BisI	GCNGC	1 cut(s)	136
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	4 cut(s)	75, 369, 891, 892
Bme18I	GGWCC	1 cut(s)	498
BmeT110I	CYCGRG	2 cut(s)	540, 890
BmgT120I	GGNCC	1 cut(s)	498
BmiI	GGNNCC	2 cut(s)	79, 499
BmrFI	CCNGG	4 cut(s)	75, 369, 891, 892
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	321, 694
BmuI	ACTGGG	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	927
BpmI	CTGGAG	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	891, 892
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	890
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 263, 264
Bse1I	ACTGG	2 cut(s)	38, 772
Bse3DI	GCAATG	1 cut(s)	823
Bse8I	GATNNNNATC	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	75, 369
BseDI	CCNNGG	1 cut(s)	890
BseGI	GGATG	2 cut(s)	680, 886
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	87, 263, 264
BseMI	GCAATG	1 cut(s)	823
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	38, 772
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	360, 767
BsiHKCI	CYCGRG	2 cut(s)	540, 890
BsiSI	CCGG	2 cut(s)	167, 891
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	3 cut(s)	87, 263, 264
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	367
BsoBI	CYCGRG	2 cut(s)	540, 890
Bsp1286I	GDGCHC	3 cut(s)	27, 360, 767
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	10, 211, 883
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	79, 499
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	823
BsrI	ACTGG	2 cut(s)	38, 772
BssECI	CCNNGG	1 cut(s)	890
BssMI	GATC	3 cut(s)	10, 211, 883
Bst2UI	CCWGG	2 cut(s)	75, 369
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstDEI	CTNAG	2 cut(s)	252, 342
BstF5I	GGATG	2 cut(s)	680, 886
BstKTI	GATC	3 cut(s)	13, 214, 886
BstMBI	GATC	3 cut(s)	10, 211, 883
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 364, 416, 704, 713, 806, 841, 944
BstNI	CCWGG	2 cut(s)	75, 369
BstSCI	CCNGG	4 cut(s)	73, 367, 889, 890
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	927
BsuRI	GGCC	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	680, 886
BtsIMutI	CAGTG	2 cut(s)	576, 765
Cfr13I	GGNCC	1 cut(s)	498
Cfr9I	CCCGGG	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	151, 912
CviAII	CATG	8 cut(s)	87, 299, 307, 361, 623, 650, 694, 717
CviQI	GTAC	2 cut(s)	151, 912
DdeI	CTNAG	2 cut(s)	252, 342
DpnI	GATC	3 cut(s)	12, 213, 885
DpnII	GATC	3 cut(s)	10, 211, 883
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	498
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	89, 939
Eco88I	CYCGRG	2 cut(s)	540, 890
EcoICRI	GAGCTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	73, 367
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	360
FaeI	CATG	8 cut(s)	90, 302, 310, 364, 626, 653, 697, 720
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	8 cut(s)	86, 298, 306, 360, 622, 649, 693, 716
FauI	CCCGC	1 cut(s)	691
FbaI	TGATCA	2 cut(s)	10, 883
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	667, 873
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	2 cut(s)	44, 444
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	167, 891
Hin1II	CATG	8 cut(s)	90, 302, 310, 364, 626, 653, 697, 720
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	159, 348, 485
HpaII	CCGG	2 cut(s)	167, 891
HphI	GGTGA	2 cut(s)	451, 713
Hpy188I	TCNGA	5 cut(s)	10, 69, 345, 609, 744
Hpy188III	TCNNGA	3 cut(s)	167, 332, 542
HpyAV	CCTTC	1 cut(s)	687
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	7 cut(s)	199, 323, 398, 410, 707, 809, 816
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 364, 416, 704, 713, 806, 841, 944
HpyF3I	CTNAG	2 cut(s)	252, 342
Hsp92II	CATG	8 cut(s)	90, 302, 310, 364, 626, 653, 697, 720
Kpn2I	TCCGGA	1 cut(s)	166
Ksp22I	TGATCA	2 cut(s)	10, 883
Kzo9I	GATC	3 cut(s)	10, 211, 883
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	2 cut(s)	321, 694
MaeI	CTAG	2 cut(s)	44, 444
MaeIII	GTNAC	2 cut(s)	439, 894
MalI	GATC	3 cut(s)	12, 213, 885
MboI	GATC	3 cut(s)	10, 211, 883
MboII	GAAGA	5 cut(s)	137, 434, 503, 506, 932
MhlI	GDGCHC	3 cut(s)	27, 360, 767
MluCI	AATT	5 cut(s)	128, 178, 279, 533, 803
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	106, 241, 303, 328, 549, 582, 625
Mph1103I	ATGCAT	1 cut(s)	400
MroI	TCCGGA	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	736
MseI	TTAA	2 cut(s)	260, 524
MspI	CCGG	2 cut(s)	167, 891
MspR9I	CCNGG	4 cut(s)	75, 369, 891, 892
MvaI	CCWGG	2 cut(s)	75, 369
MwoI	GCNNNNNNNGC	8 cut(s)	31, 364, 416, 704, 713, 806, 841, 944
NciI	CCSGG	2 cut(s)	891, 892
NdeII	GATC	3 cut(s)	10, 211, 883
NlaIII	CATG	8 cut(s)	90, 302, 310, 364, 626, 653, 697, 720
NlaIV	GGNNCC	2 cut(s)	79, 499
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	400
PaeR7I	CTCGAG	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	159, 348
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	73, 367
PspGI	CCWGG	2 cut(s)	73, 367
PspN4I	GGNNCC	2 cut(s)	79, 499
PspPI	GGNCC	1 cut(s)	498
PsrI	GAACNNNNNNTAC	2 cut(s)	849, 881
RsaI	GTAC	2 cut(s)	152, 913
RsaNI	GTAC	2 cut(s)	151, 912
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	260, 524
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	3 cut(s)	10, 211, 883
Sau96I	GGNCC	1 cut(s)	498
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	4 cut(s)	75, 369, 891, 892
SduI	GDGCHC	3 cut(s)	27, 360, 767
SetI	ASST	8 cut(s)	36, 360, 464, 590, 621, 636, 679, 846
SfaNI	GCATC	2 cut(s)	321, 694
Sfr274I	CTCGAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	540
SmaI	CCCGGG	1 cut(s)	892
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
Sse9I	AATT	5 cut(s)	128, 178, 279, 533, 803
SsiI	CCGC	1 cut(s)	698
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	2 cut(s)	44, 444
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	73, 367, 889, 890
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	5 cut(s)	123, 315, 517, 541, 929
TasI	AATT	5 cut(s)	128, 178, 279, 533, 803
TfiI	GAWTC	2 cut(s)	159, 348
Tru1I	TTAA	2 cut(s)	260, 524
Tru9I	TTAA	2 cut(s)	260, 524
TscAI	CASTG	2 cut(s)	583, 772
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	315, 611, 666, 669, 789
TspMI	CCCGGG	1 cut(s)	890
TspRI	CASTG	2 cut(s)	583, 772
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	498
XapI	RAATTY	2 cut(s)	128, 279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XhoI	CTCGAG	1 cut(s)	540
XmaI	CCCGGG	1 cut(s)	890
XmnI	GAANNNNTTC	1 cut(s)	736
XspI	CTAG	2 cut(s)	44, 444
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.