Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017096

Physical Location & Seq

Genomic Coordinates Reverse (-)

19702062 .. 19702916

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATCTCTAGGGTTTTCAACTTCATGAAACAATCCGAAACAGTTCAGCTAAACAACAAACTATTTCTCGATCTCCTCTCTTCCTCGTCATCGGCCAAACCCAAAATTTTGCACGACGTGTTCATCAACCACAGAGGATCCGACACAAAGAGAAACATCGCAACATTGCTTTATGACAATCTCAAATCTCGTAACTTACGTCCATTCTTGGATTCCAAGAACATGAAGCCCGGAGATAAGCTTTTTGATCATATCAACAACGCGATTCTCACTTCTAAAGTCGCTGTAACGGTTTTTTCTCCTAACTACTGCGATTCATATTTCTGTCTGCACGAGCTTGCTCTTATAATGGAGTCCAGAAAAAGGGTCATACCGATATTCTGCGACATCAAACCTTCACAACTCGATGTTATGATCGAGAGGGTGACATGTTCTGATGATGAAATCCAAAGGTTTAGATGGGCCCTTCAAGAAGCTAAAGATATCGTTGGACTCACGTTTGATTCCTACAAAGGGAATTTATCGGAGGTTGTTACAGTTGCATCGGATGTTATCGTCGAGAGATTGGTCGAGTTAGAGGCTAAAGATGAAAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIR TIR_2

Protein Analysis

199

Amino Acids

22.81

Weight (kDa)

6.43

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	38 - 184	1.2e-20	TIR domain
TIR_2	PF13676	40 - 143	3.5e-18	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52900
fragaria_vesca	FvH4_3g20660
prunus_persica	Prupe.4G186200_v2.0.a1
pyrus_communis	pycom11g21280
rosa_laevigata	RLG00000033567
rosa_multiflora	Rmu_sc0002460.1_g000081
rosa_roxburghii	Rroxscaffold_1G00045640
rosa_rugosa	Rorug05G0147600
rosa_samantha	Rh5AG239800 Rh5BG240500 Rh5CG270900 Rh5DG248700
rosa_wichuraiana	Rw5G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccII	CGCG	1 cut(s)	263
AclWI	GGATC	2 cut(s)	132, 145
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	105, 517
AdeI	CACNNNGTG	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	363, 513
AflIII	ACRYGT	2 cut(s)	117, 428
AgsI	TTSAA	2 cut(s)	19, 470
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	4 cut(s)	49, 241, 337, 476
AluI	AGCT	4 cut(s)	49, 241, 337, 476
AlwI	GGATC	2 cut(s)	132, 145
AoxI	GGCC	2 cut(s)	93, 462
ApaI	GGGCCC	1 cut(s)	466
ApoI	RAATTY	2 cut(s)	105, 517
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	462, 463
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	466
BamHI	GGATCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	332
BccI	CCATC	1 cut(s)	453
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	462, 463
BmiI	GGNNCC	2 cut(s)	139, 464
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 513
Bse3DI	GCAATG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	591
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	363, 513
BseMI	GCAATG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	95, 464
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	363, 513
BsnI	GGCC	2 cut(s)	95, 464
Bsp120I	GGGCCC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	3, 70, 137, 247, 414
BspANI	GGCC	2 cut(s)	95, 464
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	139, 464
BspPI	GGATC	2 cut(s)	132, 145
BsrDI	GCAATG	1 cut(s)	164
BssMI	GATC	5 cut(s)	3, 70, 137, 247, 414
BssSI	CACGAG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	43, 292, 538
Bst6I	CTCTTC	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	5 cut(s)	6, 73, 140, 250, 417
BstMBI	GATC	5 cut(s)	3, 70, 137, 247, 414
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	596
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	95, 464
BtgZI	GCGATG	1 cut(s)	142
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	339
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	462, 463
CviAII	CATG	3 cut(s)	25, 223, 429
CviJI	RGCY	8 cut(s)	49, 95, 229, 241, 337, 464, 476, 581
CviKI_1	RGCY	8 cut(s)	49, 95, 229, 241, 337, 464, 476, 581
DpnI	GATC	5 cut(s)	5, 72, 139, 249, 416
DpnII	GATC	5 cut(s)	3, 70, 137, 247, 414
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	466
FaeI	CATG	3 cut(s)	28, 226, 432
FatI	CATG	3 cut(s)	24, 222, 428
FbaI	TGATCA	1 cut(s)	247
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	466
FspBI	CTAG	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	95, 464
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	3 cut(s)	28, 226, 432
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	6 cut(s)	212, 265, 314, 353, 492, 503
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	436
Hpy188I	TCNGA	5 cut(s)	37, 142, 436, 526, 547
Hpy188III	TCNNGA	6 cut(s)	25, 68, 357, 418, 470, 559
Hpy99I	CGWCG	2 cut(s)	119, 560
HpyAV	CCTTC	2 cut(s)	405, 476
HpyCH4III	ACNGT	3 cut(s)	43, 292, 538
HpyCH4IV	ACGT	3 cut(s)	117, 199, 497
HpyCH4V	TGCA	3 cut(s)	112, 331, 542
HpySE526I	ACGT	3 cut(s)	117, 199, 497
Hsp92II	CATG	3 cut(s)	28, 226, 432
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	3, 70, 137, 247, 414
LpnPI	CCDG	2 cut(s)	244, 370
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	3 cut(s)	117, 199, 497
MaeIII	GTNAC	4 cut(s)	191, 286, 424, 532
MalI	GATC	5 cut(s)	5, 72, 139, 249, 416
MboI	GATC	5 cut(s)	3, 70, 137, 247, 414
MboII	GAAGA	1 cut(s)	72
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	2 cut(s)	105, 517
MlyI	GAGTC	2 cut(s)	362, 486
MmeI	TCCRAC	2 cut(s)	165, 469
MnlI	CCTC	6 cut(s)	86, 94, 128, 414, 520, 571
MroXI	GAANNNNTTC	1 cut(s)	42
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	263
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	5 cut(s)	3, 70, 137, 247, 414
NlaIII	CATG	3 cut(s)	28, 226, 432
NlaIV	GGNNCC	2 cut(s)	139, 464
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	432
PagI	TCATGA	1 cut(s)	24
PciI	ACATGT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	4 cut(s)	212, 265, 314, 503
PleI	GAGTC	2 cut(s)	361, 486
PpsI	GAGTC	2 cut(s)	361, 486
PscI	ACATGT	1 cut(s)	428
PsiI	TTATAA	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	139, 464
PspOMI	GGGCCC	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	462, 463
PsuI	RGATCY	1 cut(s)	137
Sau3AI	GATC	5 cut(s)	3, 70, 137, 247, 414
Sau96I	GGNCC	2 cut(s)	462, 463
SchI	GAGTC	2 cut(s)	362, 486
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	596
Sse9I	AATT	2 cut(s)	105, 517
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	43, 292, 538
TaiI	ACGT	3 cut(s)	120, 202, 500
TaqI	TCGA	5 cut(s)	69, 405, 417, 558, 570
TasI	AATT	2 cut(s)	105, 517
TfiI	GAWTC	4 cut(s)	212, 265, 314, 503
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	6 cut(s)	13, 41, 112, 239, 306, 456
XapI	RAATTY	2 cut(s)	105, 517
XceI	RCATGY	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.