Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017096

Physical Location & Seq

Genomic Coordinates Forward (+)

11065027 .. 11066013

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G186200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCATCGTTCAGCGGCAATTAACTTCCACCGCAACCTTTTCCTCCTCCAAAGCCAAACCCAATTGGCCAAACGGGTTACCAAACCCTGTGATGTGTTCCTTAATCATCGAGGTATAGACACAAAAAGAACAATAGTCTCTTTGCTTTACGACCATCTTTCTCTCCTCAACTTGCGCCCTTTCTTAGATAACAGGACCATGAAACCTGGAGACAAACTGTTCGATAAAATTGATAGTGCGATAAAGGGATGTAAGGTTGGCGTTGCTGTGTTTTCACCGCGATATTGCGACTCTTACTTTTGCCTTCATGAATTGGCCCTCTTCATGGAGTCTAAGAAGAAGGTTATTCCAATCTTCTGTGATATTAAGCCCTCTCAGCTTCGTGTCGTTGAGAACGGGCAATGTCCACCGGAGAAGCTTCCAAAGTTTAGGTTGGCTCTTGAACAGGCCAAGAACACTGTTGGGCTGACTTACGACTCCTCAAAAGGGAATTTGGCAGATGTTGTAACAAGGGCTGCAAATATTGTAATCAACAGCCTGATAGAGATTGAGAACGAAAAGCATTCTATGCGTCGTCCGAAAACTCCATTTCATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIR TIR_2

Protein Analysis

200

Amino Acids

22.74

Weight (kDa)

9.59

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52900
fragaria_vesca	FvH4_3g20660
prunus_persica	Prupe.4G186200_v2.0.a1
pyrus_communis	pycom11g21280
rosa_laevigata	RLG00000033567
rosa_multiflora	Rmu_sc0002460.1_g000081
rosa_roxburghii	Rroxscaffold_1G00045640
rosa_rugosa	Rorug05G0147600
rosa_samantha	Rh5AG239800 Rh5BG240500 Rh5CG270900 Rh5DG248700
rosa_wichuraiana	Rw5G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	14, 31, 278
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	325, 486
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	379, 418
AluI	AGCT	2 cut(s)	379, 418
Alw26I	GTCTC	2 cut(s)	142, 204
AoxI	GGCC	3 cut(s)	66, 315, 447
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	195, 316
AsuHPI	GGTGA	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	195
BalI	TGGCCA	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	142, 204
BisI	GCNGC	2 cut(s)	15, 516
BlsI	GCNGC	2 cut(s)	16, 517
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	195, 316
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 486
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	325, 486
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	389
BseRI	GAGGAG	3 cut(s)	35, 155, 469
BseXI	GCAGC	1 cut(s)	502
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	68, 317, 449
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	325, 486
BsmAI	GTCTC	2 cut(s)	142, 204
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	3 cut(s)	68, 317, 449
BspACI	CCGC	3 cut(s)	14, 31, 278
BspANI	GGCC	3 cut(s)	68, 317, 449
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	219, 460
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	184, 333, 375
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	177
BstMAI	GTCTC	2 cut(s)	142, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 568
BstNI	CCWGG	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	502
BsuRI	GGCC	3 cut(s)	68, 317, 449
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	456
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	195, 316
CseI	GACGC	1 cut(s)	560
CviAII	CATG	3 cut(s)	199, 308, 325
DdeI	CTNAG	3 cut(s)	184, 333, 375
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	202, 311, 328
FaiI	YATR	5 cut(s)	116, 200, 309, 326, 569
FatI	CATG	3 cut(s)	198, 307, 324
Fnu4HI	GCNGC	2 cut(s)	15, 516
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	15, 516
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	2 cut(s)	15, 516
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	68, 317, 449
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	202, 311, 328
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	290, 329, 476
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	2 cut(s)	308, 440
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	2 cut(s)	314, 334
HpyCH4III	ACNGT	2 cut(s)	219, 460
HpyCH4V	TGCA	2 cut(s)	4, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 568
HpyF3I	CTNAG	3 cut(s)	184, 333, 375
Hsp92II	CATG	3 cut(s)	202, 311, 328
HspAI	GCGC	1 cut(s)	175
LpnPI	CCDG	7 cut(s)	100, 178, 192, 219, 423, 431, 551
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	76, 505
MboII	GAAGA	3 cut(s)	313, 346, 349
MfeI	CAATTG	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	5 cut(s)	18, 62, 228, 311, 490
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	3 cut(s)	284, 338, 470
MnlI	CCTC	7 cut(s)	53, 56, 104, 176, 329, 382, 490
Mox20I	TGGCCA	1 cut(s)	68
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	21, 102, 366
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	376, 568
NlaIII	CATG	3 cut(s)	202, 311, 328
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	307
PctI	GAATGC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	16, 517
PleI	GAGTC	3 cut(s)	284, 337, 470
PpsI	GAGTC	3 cut(s)	284, 337, 470
Psp6I	CCWGG	1 cut(s)	205
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	195, 316
SaqAI	TTAA	3 cut(s)	21, 102, 366
SatI	GCNGC	2 cut(s)	15, 516
Sau96I	GGNCC	2 cut(s)	195, 316
SchI	GAGTC	3 cut(s)	284, 338, 470
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	8 cut(s)	39, 115, 208, 258, 345, 381, 420, 434
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	195
Sse9I	AATT	5 cut(s)	18, 62, 228, 311, 490
SsiI	CCGC	3 cut(s)	14, 31, 278
SspI	AATATT	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	219, 460
TaqI	TCGA	2 cut(s)	109, 222
TasI	AATT	5 cut(s)	18, 62, 228, 311, 490
TauI	GCSGC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	21, 102, 366
Tru9I	TTAA	3 cut(s)	21, 102, 366
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	5 cut(s)	215, 296, 313, 324, 581
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	490
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.