Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002460.1

Orthogroup ID

OG0017096

Physical Location & Seq

Genomic Coordinates Reverse (-)

387626 .. 388323

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002460.1_g000081.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgcatcgttcaacagctactagcttccaacgctaccttttcagccaccaaaaccaaatccagttggctaaacacgttactaaaccctgtgatgttttcctcaatcacagagggatagacacaaagcgaacaatagtatctttgctttacgaccatctttctcgactgaacctgcggcctttcttggacaacaagaatatgaaacctggagacaaactgtttgataagattgatagtgcaatacggagttgcaaggtcggtgttgctgtgttctcgccgcgctattgtgattcttacttttgccttcatgagctagctatgttcatggagtccaataagaaggtgattcctatattctgtgacattaagccctctcagcttcgtgtcgtggacaatgggcaatgtgatgtggagaagctgagaaggtttaggtcggctcttgaacaggctaaaagcaccgcaggtctgacgttcaactcctcagaagggaatttggcagatgttgtgacaactgctgcaaattgtgtaatcaacagcctgatcgagatcgatgaccaaaagaattctatgcagcgtccaaagactccatttcatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIR TIR_2

Protein Analysis

199

Amino Acids

22.71

Weight (kDa)

9.21

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52900
fragaria_vesca	FvH4_3g20660
prunus_persica	Prupe.4G186200_v2.0.a1
pyrus_communis	pycom11g21280
rosa_laevigata	RLG00000033567
rosa_multiflora	Rmu_sc0002460.1_g000081
rosa_roxburghii	Rroxscaffold_1G00045640
rosa_rugosa	Rorug05G0147600
rosa_samantha	Rh5AG239800 Rh5BG240500 Rh5CG270900 Rh5DG248700
rosa_wichuraiana	Rw5G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	180, 452
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	175, 278, 459
AcsI	RAATTY	2 cut(s)	490, 562
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	12, 443, 475
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	6 cut(s)	17, 24, 313, 317, 379, 418
AluI	AGCT	6 cut(s)	17, 24, 313, 317, 379, 418
Alw26I	GTCTC	1 cut(s)	204
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	515, 571
ApoI	RAATTY	2 cut(s)	490, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	355
AsuNHI	GCTAGC	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BbvI	GCAGC	2 cut(s)	502, 583
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	2 cut(s)	21, 314
BfuAI	ACCTGC	2 cut(s)	180, 452
BisI	GCNGC	4 cut(s)	176, 278, 516, 572
BlsI	GCNGC	4 cut(s)	177, 279, 517, 573
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	13
BmtI	GCTAGC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	549
BsaBI	GATNNNNATC	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	549
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	3 cut(s)	389, 410, 495
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	2 cut(s)	502, 583
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	540, 546
BspACI	CCGC	3 cut(s)	175, 278, 459
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	3 cut(s)	388, 411, 494
BspDI	ATCGAT	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	307
BspMI	ACCTGC	2 cut(s)	180, 452
BspOI	GCTAGC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	540, 546
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	3 cut(s)	375, 419, 481
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	543, 549
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	2 cut(s)	540, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 376
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	502, 583
Bsu15I	ATCGAT	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	1 cut(s)	549
BveI	ACCTGC	2 cut(s)	180, 452
Cac8I	GCNNGC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	549
CseI	GACGC	1 cut(s)	563
CviAII	CATG	2 cut(s)	308, 325
DdeI	CTNAG	3 cut(s)	375, 419, 481
DpnI	GATC	2 cut(s)	542, 548
DpnII	GATC	2 cut(s)	540, 546
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	311, 328
FaiI	YATR	7 cut(s)	200, 309, 320, 326, 353, 569, 598
FatI	CATG	2 cut(s)	307, 324
Fnu4HI	GCNGC	4 cut(s)	176, 278, 516, 572
Fsp4HI	GCNGC	4 cut(s)	176, 278, 516, 572
FspBI	CTAG	2 cut(s)	21, 314
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	4 cut(s)	176, 278, 516, 572
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	178
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	311, 328
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	290, 329, 346, 583
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	468, 484
Hpy188III	TCNNGA	4 cut(s)	162, 308, 440, 544
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	4 cut(s)	314, 334, 417, 479
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	2 cut(s)	75, 470
HpyCH4V	TGCA	5 cut(s)	4, 239, 252, 518, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 376
HpyF3I	CTNAG	3 cut(s)	375, 419, 481
HpySE526I	ACGT	2 cut(s)	75, 470
Hsp92II	CATG	2 cut(s)	311, 328
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	540, 546
LpnPI	CCDG	8 cut(s)	74, 100, 185, 192, 219, 431, 447, 551
Lsp1109I	GCAGC	2 cut(s)	502, 583
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	21, 314
MaeII	ACGT	2 cut(s)	75, 470
MaeIII	GTNAC	3 cut(s)	76, 359, 505
MalI	GATC	2 cut(s)	542, 548
MboI	GATC	2 cut(s)	540, 546
MluCI	AATT	3 cut(s)	490, 520, 562
MlyI	GAGTC	2 cut(s)	338, 577
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	4 cut(s)	104, 110, 382, 490
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	30, 376
NdeII	GATC	2 cut(s)	540, 546
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	311, 328
NmuCI	GTSAC	2 cut(s)	359, 505
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	290, 346
PkrI	GCNGC	4 cut(s)	177, 279, 517, 573
PleI	GAGTC	2 cut(s)	337, 577
PpsI	GAGTC	2 cut(s)	337, 577
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	176, 278, 516, 572
Sau3AI	GATC	2 cut(s)	540, 546
SchI	GAGTC	2 cut(s)	338, 577
ScrFI	CCNGG	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	3 cut(s)	490, 520, 562
SsiI	CCGC	3 cut(s)	175, 278, 459
SspMI	CTAG	2 cut(s)	21, 314
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	2 cut(s)	78, 473
TaqI	TCGA	3 cut(s)	163, 543, 549
TasI	AATT	3 cut(s)	490, 520, 562
TauI	GCSGC	2 cut(s)	178, 280
TfiI	GAWTC	2 cut(s)	290, 346
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	2 cut(s)	359, 505
TseI	GCWGC	2 cut(s)	515, 571
Tsp45I	GTSAC	2 cut(s)	359, 505
TspDTI	ATGAA	4 cut(s)	215, 296, 313, 581
TspGWI	ACGGA	1 cut(s)	259
XapI	RAATTY	2 cut(s)	490, 562
XspI	CTAG	2 cut(s)	21, 314
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.