FvH4_3g20660

TIR domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017096
Physical Location & Seq
Forward (+)
13708520 .. 13709207
688 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20660.t1

Sequence Viewer

Length: 600 bp
ATGCATCGTTCAACAGCTACTAGCTTCCAACGCTACCTCTTCAGCCATCAAAACCAAATCCAGTTGGCCAAACACGTTACCAAACCCTGCGATGTCTTCCTAAATCACAGAGGCATAGACACAAAGCGAACAATAGTCTCTTTGCTTTATGACCATCTTTCTCGACTCAACCTGCGTCCTTTCTTGGACAACAAGAATATGAAACCTGGAGACAAACTGTTTGATAAGATTGACAGTGCAATAAGGAGTTGCAAGGTTGGTGTTGCTGTGTTCTCGCCGCGCTATTGTGACTCTTACTTTTGCCTTCATGAACTGGCCATGTTCATGGAGTCCAACAAGAAAGTGATTCCTATATTTTGTGACATTAAGCCGTCTCAGCTTCGTGTGGTGGACAACGGGCAATGTGATGTGGAGAAGCTGAGAAGGTTTAGGTCGGCTCTTGAACAGGCTAGAAGCACCGCAGGGCTGACGTTCAACTCCTCAGAAGGGAATTTGGCAGATGTTGTGACCAGTGCTGCAGATTGTGTAATCAACAGCCTGATAGAGATCGATGACCAAATGCATTCTATACAGCGTCCAAAGACTCCGATTCGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR TIR_2

Protein Analysis

200

Amino Acids

22.72

Weight (kDa)

9.12

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 31 - 128 1e-18 TIR domain
TIR_2 PF13676 32 - 131 3.7e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52900
fragaria_vesca FvH4_3g20660
prunus_persica Prupe.4G186200_v2.0.a1
pyrus_communis pycom11g21280
rosa_laevigata RLG00000033567
rosa_multiflora Rmu_sc0002460.1_g000081
rosa_roxburghii Rroxscaffold_1G00045640
rosa_rugosa Rorug05G0147600
rosa_samantha Rh5AG239800 Rh5BG240500 Rh5CG270900 Rh5DG248700
rosa_wichuraiana Rw5G021960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AccII CGCG 1 cut(s) 280
AciI CCGC 2 cut(s) 278, 459
AcoI YGGCCR 2 cut(s) 66, 315
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 486
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 12, 443, 475
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 17, 24, 379, 418
AluI AGCT 4 cut(s) 17, 24, 379, 418
Alw26I GTCTC 3 cut(s) 142, 204, 378
AoxI GGCC 2 cut(s) 66, 315
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspLEI GCGC 1 cut(s) 282
BalI TGGCCA 2 cut(s) 68, 317
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 502
BccI CCATC 2 cut(s) 54, 162
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 3 cut(s) 142, 204, 378
BfaI CTAG 2 cut(s) 21, 450
BfmI CTRYAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 278, 516
BlsI GCNGC 2 cut(s) 279, 517
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 545
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 3 cut(s) 61, 318, 510
Bse3DI GCAATG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 549
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 3 cut(s) 389, 410, 495
BseNI ACTGG 3 cut(s) 61, 318, 510
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 68, 317
BshVI ATCGAT 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 3 cut(s) 142, 204, 378
BsmBI CGTCTC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 2 cut(s) 68, 317
Bsp143I GATC 1 cut(s) 546
BspACI CCGC 2 cut(s) 278, 459
BspANI GGCC 2 cut(s) 68, 317
BspCNI CTCAG 3 cut(s) 388, 411, 494
BspDI ATCGAT 1 cut(s) 549
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 3 cut(s) 61, 318, 510
BssMI GATC 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 219, 236
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 3 cut(s) 375, 419, 481
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 1 cut(s) 549
BstMAI GTCTC 3 cut(s) 142, 204, 378
BstMBI GATC 1 cut(s) 546
BstMWI GCNNNNNNNGC 2 cut(s) 30, 376
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 2 cut(s) 68, 317
BsuTUI ATCGAT 1 cut(s) 549
BtgZI GCGATG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 241, 517
BveI ACCTGC 1 cut(s) 180
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 282
ClaI ATCGAT 1 cut(s) 549
CseI GACGC 2 cut(s) 164, 563
CviAII CATG 3 cut(s) 308, 319, 325
DdeI CTNAG 3 cut(s) 375, 419, 481
DpnI GATC 1 cut(s) 548
DpnII GATC 1 cut(s) 546
EaeI YGGCCR 2 cut(s) 66, 315
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 2 cut(s) 6, 564
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 3 cut(s) 311, 322, 328
FaiI YATR 9 cut(s) 116, 150, 200, 309, 320, 326, 353, 569, 598
FatI CATG 3 cut(s) 307, 318, 324
Fnu4HI GCNGC 2 cut(s) 278, 516
Fsp4HI GCNGC 2 cut(s) 278, 516
FspBI CTAG 2 cut(s) 21, 450
GlaI GCGC 1 cut(s) 281
GluI GCNGC 2 cut(s) 278, 516
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 2 cut(s) 68, 317
HgaI GACGC 2 cut(s) 164, 563
HhaI GCGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 311, 322, 328
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 6 cut(s) 165, 290, 329, 346, 583, 589
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 484, 588
Hpy188III TCNNGA 3 cut(s) 162, 308, 440
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 3 cut(s) 314, 417, 479
HpyCH4III ACNGT 2 cut(s) 219, 236
HpyCH4IV ACGT 2 cut(s) 75, 470
HpyCH4V TGCA 5 cut(s) 4, 239, 252, 518, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 376
HpyF3I CTNAG 3 cut(s) 375, 419, 481
HpySE526I ACGT 2 cut(s) 75, 470
Hsp92II CATG 3 cut(s) 311, 322, 328
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 1 cut(s) 546
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 21, 450
MaeII ACGT 2 cut(s) 75, 470
MaeIII GTNAC 4 cut(s) 76, 287, 359, 505
MalI GATC 1 cut(s) 548
MboI GATC 1 cut(s) 546
MboII GAAGA 2 cut(s) 31, 88
MlsI TGGCCA 2 cut(s) 68, 317
MluCI AATT 1 cut(s) 490
MluNI TGGCCA 2 cut(s) 68, 317
MlyI GAGTC 4 cut(s) 159, 284, 338, 577
MmeI TCCRAC 2 cut(s) 52, 357
MnlI CCTC 3 cut(s) 47, 104, 490
Mox20I TGGCCA 2 cut(s) 68, 317
Mph1103I ATGCAT 2 cut(s) 6, 564
MscI TGGCCA 2 cut(s) 68, 317
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 2 cut(s) 68, 317
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 30, 376
NdeII GATC 1 cut(s) 546
NlaIII CATG 3 cut(s) 311, 322, 328
NmuCI GTSAC 3 cut(s) 287, 359, 505
NsiI ATGCAT 2 cut(s) 6, 564
PagI TCATGA 1 cut(s) 307
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 346, 589
PkrI GCNGC 2 cut(s) 279, 517
PleI GAGTC 4 cut(s) 159, 284, 337, 577
PpsI GAGTC 4 cut(s) 159, 284, 337, 577
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PstI CTGCAG 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 278, 516
Sau3AI GATC 1 cut(s) 546
SchI GAGTC 4 cut(s) 159, 284, 338, 577
ScrFI CCNGG 1 cut(s) 207
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 1 cut(s) 490
SsiI CCGC 2 cut(s) 278, 459
SspMI CTAG 2 cut(s) 21, 450
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 219, 236
TaiI ACGT 2 cut(s) 78, 473
TaqI TCGA 2 cut(s) 163, 549
TasI AATT 1 cut(s) 490
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 2 cut(s) 346, 589
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 241, 517
TseFI GTSAC 3 cut(s) 287, 359, 505
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 3 cut(s) 287, 359, 505
TspDTI ATGAA 4 cut(s) 215, 296, 313, 324
TspRI CASTG 2 cut(s) 241, 517
XapI RAATTY 1 cut(s) 490
XspI CTAG 2 cut(s) 21, 450
Zsp2I ATGCAT 2 cut(s) 6, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.