pycom11g21280

TIR domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0017096
Physical Location & Seq
Reverse (-)
24447610 .. 24448695
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g21280.2

Sequence Viewer

Length: 558 bp
ATGCATCGTTCATCAGCCATTAGCTTGAAGCACAATCTATTCAGCTTCCAAAAGCAAACCCAATTGGCCGAACGCGCCACGAAATCTTGCGATGTGTTTCTTAACCATAGAGGAATCGACACAAAGAGAACAATCGTCTCTTTGCTTTACGACCACCTTTCTCGACTCAACTTGCGCCCTTTCTTAGATAATAGGACCATGAGGCCTGGAGATAAACTATTTGATAAAATTGACAGTGCAATAAGGGGCTGCAAGGTTGGTGTTGCTGTGTTTTCGCCTCGCTATTGTGACTCGTATTTTTGCCTTCATGAACTGGCCCTAATCATGGAGTCCAATAAGAAGGTCATTCCTATATTCTGTGACATCAAGCCCTCTCAGCTTCGTATCGTGGACAACGGGCAATGTCCGCCGGAGAAGCTACAAAGTTTTAGGTTGGCTCTTCAAGAGGCTAGGAATACCGTAGGGTTGACATACAACTCCTCAAAAGGGAACATGGCAGATGTTGTAACAACTGCTGCAGACGTTGTAATCAACAGCCTGAGGGAGACTGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR TIR_2

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

9.22

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52900
fragaria_vesca FvH4_3g20660
prunus_persica Prupe.4G186200_v2.0.a1
pyrus_communis pycom11g21280
rosa_laevigata RLG00000033567
rosa_multiflora Rmu_sc0002460.1_g000081
rosa_roxburghii Rroxscaffold_1G00045640
rosa_rugosa Rorug05G0147600
rosa_samantha Rh5AG239800 Rh5BG240500 Rh5CG270900 Rh5DG248700
rosa_wichuraiana Rw5G021960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 325, 486
AgsI TTSAA 2 cut(s) 28, 443
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 24, 45, 379, 418
AluI AGCT 4 cut(s) 24, 45, 379, 418
Alw26I GTCTC 2 cut(s) 142, 539
AoxI GGCC 3 cut(s) 66, 203, 315
ApeKI GCWGC 2 cut(s) 249, 515
AspLEI GCGC 2 cut(s) 77, 177
AspS9I GGNCC 2 cut(s) 195, 316
AvaII GGWCC 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 539
BbvI GCAGC 2 cut(s) 236, 502
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 142, 539
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 516
BisI GCNGC 2 cut(s) 250, 516
BlsI GCNGC 2 cut(s) 251, 517
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 195, 316
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 486
Bse1I ACTGG 1 cut(s) 318
Bse21I CCTNAGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 325, 486
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 3 cut(s) 389, 530, 540
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 2 cut(s) 236, 502
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 68, 205, 317
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 325, 486
BsmAI GTCTC 2 cut(s) 142, 539
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 3 cut(s) 68, 205, 317
BspACI CCGC 1 cut(s) 407
BspANI GGCC 3 cut(s) 68, 205, 317
BspCNI CTCAG 3 cut(s) 388, 531, 541
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 520
BspQI GCTCTTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 236, 460
Bst6I CTCTTC 1 cut(s) 444
BstDEI CTNAG 4 cut(s) 184, 375, 539, 549
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 77, 177
BstMAI GTCTC 2 cut(s) 142, 539
BstMWI GCNNNNNNNGC 4 cut(s) 74, 376, 406, 415
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 236, 502
Bsu36I CCTNAGG 1 cut(s) 539
BsuRI GGCC 3 cut(s) 68, 205, 317
BtgZI GCGATG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 307
CfoI GCGC 2 cut(s) 77, 177
Cfr13I GGNCC 2 cut(s) 195, 316
CviAII CATG 4 cut(s) 199, 308, 325, 493
DdeI CTNAG 4 cut(s) 184, 375, 539, 549
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EciI GGCGGA 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 195
Eco81I CCTNAGG 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 4 cut(s) 202, 311, 328, 496
FaiI YATR 7 cut(s) 108, 200, 309, 326, 353, 472, 494
FatI CATG 4 cut(s) 198, 307, 324, 492
Fnu4HI GCNGC 2 cut(s) 250, 516
Fsp4HI GCNGC 2 cut(s) 250, 516
FspBI CTAG 1 cut(s) 450
GlaI GCGC 2 cut(s) 76, 176
GluI GCNGC 2 cut(s) 250, 516
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 3 cut(s) 68, 205, 317
HapII CCGG 1 cut(s) 410
HhaI GCGC 2 cut(s) 77, 177
Hin1II CATG 4 cut(s) 202, 311, 328, 496
Hin6I GCGC 2 cut(s) 75, 175
HinP1I GCGC 2 cut(s) 75, 175
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 4 cut(s) 114, 165, 290, 329
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 391, 468
Hpy188III TCNNGA 3 cut(s) 162, 308, 443
Hpy8I GTNNAC 2 cut(s) 391, 468
HpyAV CCTTC 2 cut(s) 314, 334
HpyCH4III ACNGT 2 cut(s) 236, 460
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 4 cut(s) 4, 239, 252, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 376, 406, 415
HpyF3I CTNAG 4 cut(s) 184, 375, 539, 549
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 4 cut(s) 202, 311, 328, 496
HspAI GCGC 2 cut(s) 75, 175
LguI GCTCTTC 1 cut(s) 444
LpnPI CCDG 5 cut(s) 192, 219, 299, 423, 551
Lsp1109I GCAGC 2 cut(s) 236, 502
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 287, 359, 505
MboII GAAGA 1 cut(s) 431
MfeI CAATTG 1 cut(s) 62
MluCI AATT 2 cut(s) 62, 228
MlyI GAGTC 3 cut(s) 159, 284, 338
MnlI CCTC 7 cut(s) 104, 195, 288, 382, 439, 490, 534
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 4 cut(s) 74, 376, 406, 415
NlaIII CATG 4 cut(s) 202, 311, 328, 496
NmuCI GTSAC 2 cut(s) 287, 359
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 307
PceI AGGCCT 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 251, 517
PleI GAGTC 3 cut(s) 159, 284, 337
PpsI GAGTC 3 cut(s) 159, 284, 337
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 2 cut(s) 195, 316
PstI CTGCAG 1 cut(s) 520
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 250, 516
Sau96I GGNCC 2 cut(s) 195, 316
SchI GAGTC 3 cut(s) 159, 284, 338
ScrFI CCNGG 1 cut(s) 207
SetI ASST 9 cut(s) 26, 47, 159, 258, 345, 381, 420, 434, 525
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 1 cut(s) 195
Sse9I AATT 2 cut(s) 62, 228
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 1 cut(s) 407
SspMI CTAG 1 cut(s) 450
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 236, 460
TaiI ACGT 1 cut(s) 525
TaqI TCGA 2 cut(s) 117, 163
TasI AATT 2 cut(s) 62, 228
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 287, 359
TseI GCWGC 2 cut(s) 249, 515
Tsp45I GTSAC 2 cut(s) 287, 359
TspDTI ATGAA 2 cut(s) 296, 324
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 195
XspI CTAG 1 cut(s) 450
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.