Rorug05G0147600

TIR domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017096
Physical Location & Seq
Forward (+)
13744314 .. 13752673
8360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0147600.1

Sequence Viewer

Length: 963 bp
ATGGCTATGACTAAACCTCATTGGCAAGCAGAGAAAGAAGAAAACATAAAGCAGGTAGATAACTACCTTATCAAACCACGAGGACTTAATATTGTATGGGGCAATGATGAACGGTACTGGAAAATACCAGCCAGAGGGACTGAGGATCCTGCAGAGCTGGTACAGGTCTCGTGGCTGGAAGTAACAGGCTCAGTTGAGTTGAAAGCCGGGAAGGGGTACGAACTCACCTTCGATGTGGGACTGGCAGAAGATGCATTTGGTTGGAAAGACATACAAGTGTTCTTGATGGCAAAGGTAGGGAAAAAGGGAAAGTACAAATGGACAAGAGTTAAACTCGATCAGGATCAGAATAACGAGAGAGTTACGATTCCTGATAAACAGAAGCTTAGCATTGATGTTCCAGCTGATACAATGGACACCGACCTTCATTTTGGTTTGTATGAAGTGTGGAGTGGGAAATGGAAAGGAGGCTTGAAGATTTATAATGCGAAAGGAGATGGCTACATTATCAAACCACGAGGACTTAACATTGTATGGGGCAATGATGAACGCTACTGGAAAATACCAGCCAAAGGGCCTGCAGGTGTCAATGATGCTGCAGAGCTGGTGCAGGTTTCACGGCTGGAAGTAACAGGCTCAGTTGTTTTAACACCTGGGAAGACTTATAAACTGAACTTTGAGGTACAACTGCTATCAGAGGCATTTGGCTGGAAAGATATACAAGCTTTCTTGATGGCCAAGGTAGGAAAAAAGGGAAGATACACGTGGAAAAGGGTTCAAGTACAGCAGCAGTCTGGGACAGACAAATTCTTGATTCCTAAGGAAGAAGATGAGCTCCGCATTATAGTTCCACCTGGGAATACTGACAACACCCTTCAGTTCGGTCTGTATGAAGTGTGGAGTGGGAAATGGAAAGGAGGCTTGAAGATCTATAATGCGCAAGTAACTGCGATTAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR TIR_2

Protein Analysis

320

Amino Acids

36.35

Weight (kDa)

8.97

Isoelectric Point (pI)

10.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 21 - 160 1.9e-19 Phloem protein 2
PP2 PF14299 168 - 312 7.9e-20 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52900
fragaria_vesca FvH4_3g20660
prunus_persica Prupe.4G186200_v2.0.a1
pyrus_communis pycom11g21280
rosa_laevigata RLG00000033567
rosa_multiflora Rmu_sc0002460.1_g000081
rosa_roxburghii Rroxscaffold_1G00045640
rosa_rugosa Rorug05G0147600
rosa_samantha Rh5AG239800 Rh5BG240500 Rh5CG270900 Rh5DG248700
rosa_wichuraiana Rw5G021960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 483, 666
AarI CACCTGC 1 cut(s) 572
Acc16I TGCGCA 1 cut(s) 939
Acc36I ACCTGC 3 cut(s) 43, 572, 601
AciI CCGC 1 cut(s) 838
AclWI GGATC 3 cut(s) 140, 153, 351
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 1 cut(s) 860
AcvI CACGTG 1 cut(s) 765
AfaI GTAC 6 cut(s) 116, 162, 218, 314, 684, 783
AfiI CCNNNNNNNGG 3 cut(s) 134, 213, 572
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 4 cut(s) 202, 475, 779, 925
AjnI CCWGG 2 cut(s) 652, 853
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 6 cut(s) 157, 385, 404, 604, 725, 835
AluI AGCT 6 cut(s) 157, 385, 404, 604, 725, 835
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 3 cut(s) 140, 153, 351
AoxI GGCC 2 cut(s) 575, 735
ApeKI GCWGC 2 cut(s) 596, 787
ApoI RAATTY 1 cut(s) 806
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AseI ATTAAT 1 cut(s) 954
AspLEI GCGC 1 cut(s) 940
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 819
BalI TGGCCA 1 cut(s) 737
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 837
BauI CACGAG 3 cut(s) 78, 169, 516
BbrPI CACGTG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 583, 799
BccI CCATC 3 cut(s) 280, 491, 727
BceAI ACGGC 1 cut(s) 635
BciT130I CCWGG 2 cut(s) 654, 855
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 172
BfmI CTRYAG 3 cut(s) 150, 579, 597
BfuAI ACCTGC 3 cut(s) 43, 572, 601
BglII AGATCT 1 cut(s) 927
BisI GCNGC 2 cut(s) 597, 788
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 2 cut(s) 598, 789
Bme1390I CCNGG 3 cut(s) 208, 654, 855
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 3 cut(s) 208, 654, 855
BmsI GCATC 2 cut(s) 241, 583
BpiI GAAGAC 1 cut(s) 665
BplI GAGNNNNNCTC 2 cut(s) 318, 350
Bpu1102I GCTNAGC 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 765
BsaBI GATNNNNATC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 3 cut(s) 653, 738, 854
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 213, 572
Bse1I ACTGG 3 cut(s) 122, 246, 560
Bse21I CCTNAGG 1 cut(s) 819
Bse3DI GCAATG 2 cut(s) 109, 547
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 2 cut(s) 654, 855
BseDI CCNNGG 3 cut(s) 653, 738, 854
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 134, 213, 572
BseMI GCAATG 2 cut(s) 109, 547
BseMII CTCAG 3 cut(s) 132, 204, 651
BseNI ACTGG 3 cut(s) 122, 246, 560
BseXI GCAGC 2 cut(s) 583, 799
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 2 cut(s) 577, 737
BsiHKAI GWGCWC 1 cut(s) 837
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 3 cut(s) 151, 252, 811
BslI CCNNNNNNNGG 3 cut(s) 134, 213, 572
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 3 cut(s) 151, 252, 811
BsnI GGCC 2 cut(s) 577, 737
Bso31I GGTCTC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 837
Bsp143I GATC 4 cut(s) 145, 337, 343, 927
Bsp1720I GCTNAGC 1 cut(s) 386
BspACI CCGC 1 cut(s) 838
BspANI GGCC 2 cut(s) 577, 737
BspCNI CTCAG 3 cut(s) 133, 203, 650
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 3 cut(s) 154, 583, 601
BspMI ACCTGC 3 cut(s) 43, 572, 601
BspPI GGATC 3 cut(s) 140, 153, 351
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 109, 547
BsrI ACTGG 3 cut(s) 122, 246, 560
BssECI CCNNGG 3 cut(s) 653, 738, 854
BssMI GATC 4 cut(s) 145, 337, 343, 927
BssSI CACGAG 3 cut(s) 78, 169, 516
BssT1I CCWWGG 1 cut(s) 738
Bst2BI CACGAG 3 cut(s) 78, 169, 516
Bst2UI CCWGG 2 cut(s) 654, 855
Bst4CI ACNGT 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 765
BstC8I GCNNGC 2 cut(s) 27, 579
BstDEI CTNAG 5 cut(s) 141, 190, 386, 637, 819
BstHHI GCGC 1 cut(s) 940
BstKTI GATC 4 cut(s) 148, 340, 346, 930
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 4 cut(s) 145, 337, 343, 927
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 654, 855
BstSCI CCNGG 3 cut(s) 206, 652, 853
BstSFI CTRYAG 3 cut(s) 150, 579, 597
BstV1I GCAGC 2 cut(s) 583, 799
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 2 cut(s) 145, 927
BstYI RGATCY 2 cut(s) 145, 927
Bsu36I CCTNAGG 1 cut(s) 819
BsuRI GGCC 2 cut(s) 577, 737
BveI ACCTGC 3 cut(s) 43, 572, 601
Cac8I GCNNGC 2 cut(s) 27, 579
CfoI GCGC 1 cut(s) 940
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 6 cut(s) 115, 161, 217, 313, 683, 782
CviQI GTAC 6 cut(s) 115, 161, 217, 313, 683, 782
DdeI CTNAG 5 cut(s) 141, 190, 386, 637, 819
DpnI GATC 4 cut(s) 147, 339, 345, 929
DpnII GATC 4 cut(s) 145, 337, 343, 927
EaeI YGGCCR 1 cut(s) 735
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 837
Eco31I GGTCTC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 860
Eco72I CACGTG 1 cut(s) 765
Eco81I CCTNAGG 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 835
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 652, 853
EcoT14I CCWWGG 1 cut(s) 738
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 738
FaqI GGGAC 3 cut(s) 151, 252, 811
Fnu4HI GCNGC 2 cut(s) 597, 788
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 2 cut(s) 597, 788
FspI TGCGCA 1 cut(s) 939
GlaI GCGC 1 cut(s) 939
GluI GCNGC 2 cut(s) 597, 788
HaeIII GGCC 2 cut(s) 577, 737
HapII CCGG 1 cut(s) 207
HhaI GCGC 1 cut(s) 940
Hin6I GCGC 1 cut(s) 938
HinP1I GCGC 1 cut(s) 938
HindIII AAGCTT 2 cut(s) 383, 723
HinfI GANTC 2 cut(s) 367, 814
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 348, 697
Hpy188III TCNNGA 5 cut(s) 283, 341, 371, 730, 811
HpyAV CCTTC 4 cut(s) 205, 238, 434, 884
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 5 cut(s) 152, 254, 581, 599, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 5 cut(s) 141, 190, 386, 637, 819
HpySE526I ACGT 1 cut(s) 764
HspAI GCGC 1 cut(s) 938
Kzo9I GATC 4 cut(s) 145, 337, 343, 927
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 2 cut(s) 583, 799
LweI GCATC 2 cut(s) 241, 583
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 4 cut(s) 181, 361, 628, 943
MalI GATC 4 cut(s) 147, 339, 345, 929
MboI GATC 4 cut(s) 145, 337, 343, 927
MboII GAAGA 8 cut(s) 50, 260, 487, 670, 768, 836, 839, 937
MflI RGATCY 2 cut(s) 145, 927
MhlI GDGCHC 1 cut(s) 837
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 1 cut(s) 806
MluNI TGGCCA 1 cut(s) 737
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 9 cut(s) 27, 74, 128, 136, 461, 512, 673, 691, 911
Mox20I TGGCCA 1 cut(s) 737
Mph1103I ATGCAT 1 cut(s) 256
MscI TGGCCA 1 cut(s) 737
MseI TTAA 5 cut(s) 87, 330, 525, 647, 954
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 3 cut(s) 208, 654, 855
MvaI CCWGG 2 cut(s) 654, 855
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 208
NdeII GATC 4 cut(s) 145, 337, 343, 927
NlaIV GGNNCC 1 cut(s) 147
NsbI TGCGCA 1 cut(s) 939
NsiI ATGCAT 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 367, 814
PkrI GCNGC 2 cut(s) 598, 789
PmaCI CACGTG 1 cut(s) 765
PmlI CACGTG 1 cut(s) 765
Ppu21I YACGTR 1 cut(s) 765
PshBI ATTAAT 1 cut(s) 954
PsiI TTATAA 2 cut(s) 483, 666
Psp124BI GAGCTC 1 cut(s) 837
Psp6I CCWGG 2 cut(s) 652, 853
PspCI CACGTG 1 cut(s) 765
PspGI CCWGG 2 cut(s) 652, 853
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 575
PstI CTGCAG 3 cut(s) 154, 583, 601
PsuI RGATCY 2 cut(s) 145, 927
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 6 cut(s) 116, 162, 218, 314, 684, 783
RsaNI GTAC 6 cut(s) 115, 161, 217, 313, 683, 782
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 837
SaqAI TTAA 5 cut(s) 87, 330, 525, 647, 954
SatI GCNGC 2 cut(s) 597, 788
Sau3AI GATC 4 cut(s) 145, 337, 343, 927
Sau96I GGNCC 1 cut(s) 575
SbfI CCTGCAGG 1 cut(s) 583
ScrFI CCNGG 3 cut(s) 208, 654, 855
SdaI CCTGCAGG 1 cut(s) 583
SduI GDGCHC 1 cut(s) 837
SfaNI GCATC 2 cut(s) 241, 583
SfcI CTRYAG 3 cut(s) 150, 579, 597
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse8387I CCTGCAGG 1 cut(s) 583
Sse9I AATT 1 cut(s) 806
SsiI CCGC 1 cut(s) 838
SspI AATATT 1 cut(s) 91
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 3 cut(s) 206, 652, 853
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 1 cut(s) 114
TaiI ACGT 1 cut(s) 767
TaqI TCGA 2 cut(s) 231, 336
TaqII GACCGA 1 cut(s) 872
TasI AATT 1 cut(s) 806
TatI WGTACW 2 cut(s) 312, 781
TfiI GAWTC 2 cut(s) 367, 814
Tru1I TTAA 5 cut(s) 87, 330, 525, 647, 954
Tru9I TTAA 5 cut(s) 87, 330, 525, 647, 954
TseI GCWGC 2 cut(s) 596, 787
TspDTI ATGAA 5 cut(s) 123, 416, 456, 561, 906
VspI ATTAAT 1 cut(s) 954
XapI RAATTY 1 cut(s) 806
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.