AT1G52920

Lanthionine synthetase C-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014003
Physical Location & Seq
Reverse (-)
19709275 .. 19711081
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52920.1

Sequence Viewer

Length: 1233 bp
ATGGGAGAACGGTTTTTCCGAAATGAGATGCCGGAGTTTGTACCGGAAGATTTATCCGGAGAAGAAGAAACTGTTACCGAATGTAAAGATTCGTTGACGAAACTGCTATCACTTCCGTACAAATCATTCTCAGAGAAGCTTCACAGATATGCTCTAAGCATCAAAGATAAAGTAGTCTGGGAGACATGGGAACGATCTGGAAAACGTGTTCGAGATTATAACTTGTATACTGGAGTTCTTGGGACAGCTTATCTCTTGTTCAAATCTTATCAGGTTACTAGAAATGAAGATGATCTTAAGCTATGCTTAGAGAATGTTGAAGCTTGTGATGTAGCTTCAAGAGATTCTGAGCGAGTGACATTTATATGTGGCTATGCTGGTGTATGTGCTCTTGGTGCTGTTGCAGCGAAGTGTTTAGGTGATGACCAGTTATATGATCGTTACTTAGCCCGTTTCCGAGGGATTAGGCTTCCTAGTGACTTGCCATATGAGTTGCTATATGGTAGAGCAGGATACTTGTGGGCGTGTTTGTTCTTGAATAAGCATATTGGTCAGGAGAGTATATCATCTGAACGAATGAGATCAGTGGTTGAGGAAATCTTCAGGGCAGGAAGACAACTCGGGAATAAAGGAACTTGTCCATTGATGTATGAGTGGCACGGGAAGAGGTACTGGGGGGCTGCACACGGTTTAGCTGGGATCATGAATGTTTTGATGCATACGGAACTTGAACCAGATGAAATCAAAGATGTCAAAGGTACACTAAGCTATATGATACAAAACCGTTTTCCTAGCGGGAATTACCTATCTAGTGAAGGAAGCAAATCAGATCGCCTTGTTCACTGGTGTCACGGTGCTCCTGGTGTTGCTCTCACACTTGTAAAGGCAGCTCAGGTTTATAACACTAAGGAATTTGTAGAGGCAGCAATGGAGGCAGGAGAAGTTGTGTGGAGCCGTGGATTGCTTAAACGAGTAGGAATCTGTCACGGTATCAGCGGAAACACATACGTGTTTCTTTCTCTATACCGGTTAACAAGAAACCCAAAGTATTTGTACCGCGCTAAAGCTTTCGCGTCTTTCCTACTCGATAAATCAGAGAAGTTAATCTCAGAAGGTCAAATGCATGGAGGAGATAGACCCTTCTCTCTCTTTGAAGGTATCGGAGGAATGGCCTACATGTTACTCGACATGAATGATCCAACACAAGCTCTGTTTCCAGGTTATGAACTCTAA

Protein Analysis

410

Amino Acids

46.45

Weight (kDa)

6.53

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 70 - 410 6.9e-107 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52920
fragaria_vesca FvH4_3g20590 FvH4_3g20590
malus_domestica MD03G1223900.v1.1
prunus_persica Prupe.4G185600_v2.0.a1
pyrus_communis pycom03g17230
rosa_chinensis RchiOBHm_Chr5g0034611
rosa_laevigata RLG00000033558
rosa_multiflora Rmu_sc0017377.1_g000004
rosa_roxburghii Rroxscaffold_1G00045710
rosa_rugosa Rorug05G0147200
rosa_samantha Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 219, 900
AccI GTMKAC 1 cut(s) 227
AccII CGCG 2 cut(s) 1059, 1073
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 3 cut(s) 795, 996, 1057
AclWI GGATC 2 cut(s) 707, 1190
AcsI RAATTY 1 cut(s) 911
AcuI CTGAAG 1 cut(s) 586
AfaI GTAC 5 cut(s) 42, 119, 671, 760, 1055
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 3 cut(s) 205, 1008, 1176
AgeI ACCGGT 1 cut(s) 1026
AgsI TTSAA 6 cut(s) 262, 320, 339, 538, 731, 1154
AjnI CCWGG 2 cut(s) 859, 1216
AleI CACNNNNGTG 1 cut(s) 1007
AloI GAACNNNNNNTCC 3 cut(s) 32, 192, 224
Alw21I GWGCWC 2 cut(s) 391, 859
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 2 cut(s) 707, 1190
Ama87I CYCGRG 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 1 cut(s) 1170
ApeKI GCWGC 4 cut(s) 404, 680, 887, 923
ApoI RAATTY 1 cut(s) 911
AsiGI ACCGGT 1 cut(s) 1026
AspLEI GCGC 1 cut(s) 1061
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 619
Bbv12I GWGCWC 2 cut(s) 391, 859
BbvI GCAGC 4 cut(s) 416, 667, 899, 935
BceAI ACGGC 1 cut(s) 939
BciT130I CCWGG 2 cut(s) 861, 1218
BciVI GTATCC 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 4 cut(s) 279, 474, 792, 810
BfrI CTTAAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 506
BisI GCNGC 4 cut(s) 405, 681, 888, 924
BlsI GCNGC 4 cut(s) 406, 682, 889, 925
Bme1390I CCNGG 2 cut(s) 861, 1218
BmeT110I CYCGRG 1 cut(s) 620
BmiI GGNNCC 1 cut(s) 953
BmrFI CCNGG 2 cut(s) 861, 1218
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 3 cut(s) 18, 168, 705
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 891
BsaAI YACGTR 1 cut(s) 1009
BsaJI CCNNGG 2 cut(s) 457, 955
BsaWI WCCGGW 3 cut(s) 43, 56, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 930, 960
Bse118I RCCGGY 1 cut(s) 1026
Bse1I ACTGG 4 cut(s) 235, 427, 677, 848
Bse3DI GCAATG 1 cut(s) 933
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 2 cut(s) 861, 1218
BseDI CCNNGG 2 cut(s) 457, 955
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 4 cut(s) 144, 339, 905, 1122
BseNI ACTGG 4 cut(s) 235, 427, 677, 848
BseRI GAGGAG 1 cut(s) 1143
BseXI GCAGC 4 cut(s) 416, 667, 899, 935
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 1 cut(s) 666
Bsh1236I CGCG 2 cut(s) 1059, 1073
BshFI GGCC 1 cut(s) 1172
BshTI ACCGGT 1 cut(s) 1026
BsiHKAI GWGCWC 2 cut(s) 391, 859
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 4 cut(s) 32, 44, 57, 1027
BslFI GGGAC 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 1 cut(s) 1172
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 391, 859
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
BspACI CCGC 3 cut(s) 795, 996, 1057
BspANI GGCC 1 cut(s) 1172
BspCNI CTCAG 4 cut(s) 143, 340, 904, 1121
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 2 cut(s) 1059, 1073
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 953
BspPI GGATC 2 cut(s) 707, 1190
BspTI CTTAAG 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 933
BsrFI RCCGGY 1 cut(s) 1026
BsrI ACTGG 4 cut(s) 235, 427, 677, 848
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 2 cut(s) 457, 955
BssMI GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
BssNAI GTATAC 1 cut(s) 228
Bst1107I GTATAC 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 861, 1218
Bst4CI ACNGT 6 cut(s) 12, 73, 689, 785, 854, 989
Bst6I CTCTTC 1 cut(s) 659
BstAFI CTTAAG 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 1009
BstDEI CTNAG 9 cut(s) 130, 155, 307, 348, 445, 764, 891, 906, 1108
BstDSI CCRYGG 1 cut(s) 955
BstFNI CGCG 2 cut(s) 1059, 1073
BstHHI GCGC 1 cut(s) 1061
BstKTI GATC 7 cut(s) 197, 295, 439, 584, 702, 832, 1198
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
BstMWI GCNNNNNNNGC 3 cut(s) 395, 404, 932
BstNI CCWGG 2 cut(s) 861, 1218
BstNSI RCATGY 1 cut(s) 1180
BstSCI CCNGG 2 cut(s) 859, 1216
BstUI CGCG 2 cut(s) 1059, 1073
BstV1I GCAGC 4 cut(s) 416, 667, 899, 935
BstV2I GAAGAC 1 cut(s) 619
BstZ17I GTATAC 1 cut(s) 228
BsuI GTATCC 1 cut(s) 506
BsuRI GGCC 1 cut(s) 1172
BtgI CCRYGG 1 cut(s) 955
BtsIMutI CAGTG 2 cut(s) 591, 841
CciI TCATGA 1 cut(s) 702
CfoI GCGC 1 cut(s) 1061
Cfr10I RCCGGY 1 cut(s) 1026
CseI GACGC 1 cut(s) 1062
Csp6I GTAC 5 cut(s) 41, 118, 670, 759, 1054
CspAI ACCGGT 1 cut(s) 1026
CviAII CATG 5 cut(s) 186, 703, 1124, 1177, 1189
CviQI GTAC 5 cut(s) 41, 118, 670, 759, 1054
DdeI CTNAG 9 cut(s) 130, 155, 307, 348, 445, 764, 891, 906, 1108
DpnI GATC 7 cut(s) 196, 294, 438, 583, 701, 831, 1197
DpnII GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 620
EcoRII CCWGG 2 cut(s) 859, 1216
EcoT22I ATGCAT 2 cut(s) 720, 1125
FaeI CATG 5 cut(s) 189, 706, 1127, 1180, 1192
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 290, 322
FaqI GGGAC 1 cut(s) 256
FatI CATG 5 cut(s) 185, 702, 1123, 1176, 1188
FauI CCCGC 1 cut(s) 788
FauNDI CATATG 1 cut(s) 487
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 4 cut(s) 405, 681, 888, 924
Fsp4HI GCNGC 4 cut(s) 405, 681, 888, 924
FspBI CTAG 4 cut(s) 279, 474, 792, 810
GlaI GCGC 1 cut(s) 1060
GluI GCNGC 4 cut(s) 405, 681, 888, 924
GsaI CCCAGC 1 cut(s) 699
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 1172
HapII CCGG 4 cut(s) 32, 44, 57, 1027
HgaI GACGC 1 cut(s) 1062
HhaI GCGC 1 cut(s) 1061
Hin1II CATG 5 cut(s) 189, 706, 1127, 1180, 1192
Hin6I GCGC 1 cut(s) 1059
HinP1I GCGC 1 cut(s) 1059
HincII GTYRAC 2 cut(s) 96, 1032
HindII GTYRAC 2 cut(s) 96, 1032
HindIII AAGCTT 3 cut(s) 137, 321, 1065
HinfI GANTC 3 cut(s) 89, 344, 978
HpaI GTTAAC 1 cut(s) 1032
HpaII CCGG 4 cut(s) 32, 44, 57, 1027
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 5 cut(s) 96, 228, 761, 841, 1032
Hpy188I TCNGA 9 cut(s) 20, 133, 349, 458, 571, 829, 1096, 1111, 1163
Hpy188III TCNNGA 8 cut(s) 57, 198, 212, 339, 535, 554, 622, 703
Hpy8I GTNNAC 5 cut(s) 96, 228, 761, 841, 1032
HpyAV CCTTC 4 cut(s) 809, 1106, 1148, 1150
HpyCH4III ACNGT 6 cut(s) 12, 73, 689, 785, 854, 989
HpyCH4IV ACGT 2 cut(s) 205, 1008
HpyCH4V TGCA 4 cut(s) 404, 683, 718, 1123
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 404, 932
HpyF3I CTNAG 9 cut(s) 130, 155, 307, 348, 445, 764, 891, 906, 1108
HpySE526I ACGT 2 cut(s) 205, 1008
Hsp92II CATG 5 cut(s) 189, 706, 1127, 1180, 1192
HspAI GCGC 1 cut(s) 1059
Kpn2I TCCGGA 1 cut(s) 56
KspAI GTTAAC 1 cut(s) 1032
Kzo9I GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
LmnI GCTCC 2 cut(s) 862, 951
Lsp1109I GCAGC 4 cut(s) 416, 667, 899, 935
LweI GCATC 3 cut(s) 18, 168, 705
MaeI CTAG 4 cut(s) 279, 474, 792, 810
MaeII ACGT 2 cut(s) 205, 1008
MaeIII GTNAC 8 cut(s) 73, 274, 355, 440, 476, 848, 983, 1179
MalI GATC 7 cut(s) 196, 294, 438, 583, 701, 831, 1197
MboI GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
MboII GAAGA 7 cut(s) 59, 74, 77, 299, 592, 624, 676
MhlI GDGCHC 2 cut(s) 391, 859
MluCI AATT 2 cut(s) 799, 911
MmeI TCCRAC 1 cut(s) 1223
MnlI CCTC 7 cut(s) 452, 586, 660, 913, 925, 1121, 1157
Mph1103I ATGCAT 2 cut(s) 720, 1125
MroI TCCGGA 1 cut(s) 56
MseI TTAA 4 cut(s) 297, 966, 1031, 1103
MslI CAYNNNNRTG 3 cut(s) 147, 364, 1007
MspA1I CMGCKG 1 cut(s) 996
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 4 cut(s) 32, 44, 57, 1027
MspR9I CCNGG 2 cut(s) 861, 1218
MvaI CCWGG 2 cut(s) 861, 1218
MvnI CGCG 2 cut(s) 1059, 1073
MwoI GCNNNNNNNGC 3 cut(s) 395, 404, 932
NdeI CATATG 1 cut(s) 487
NdeII GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
NlaIII CATG 5 cut(s) 189, 706, 1127, 1180, 1192
NlaIV GGNNCC 1 cut(s) 953
NmuCI GTSAC 4 cut(s) 355, 476, 848, 983
NsiI ATGCAT 2 cut(s) 720, 1125
NspI RCATGY 1 cut(s) 1180
OliI CACNNNNGTG 1 cut(s) 1007
PagI TCATGA 1 cut(s) 702
PciI ACATGT 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PfeI GAWTC 3 cut(s) 89, 344, 978
PinAI ACCGGT 1 cut(s) 1026
PkrI GCNGC 4 cut(s) 406, 682, 889, 925
Ppu21I YACGTR 1 cut(s) 1009
PscI ACATGT 1 cut(s) 1176
PsiI TTATAA 2 cut(s) 219, 900
Psp6I CCWGG 2 cut(s) 859, 1216
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 2 cut(s) 859, 1216
PspN4I GGNNCC 1 cut(s) 953
RsaI GTAC 5 cut(s) 42, 119, 671, 760, 1055
RsaNI GTAC 5 cut(s) 41, 118, 670, 759, 1054
RseI CAYNNNNRTG 3 cut(s) 147, 364, 1007
SaqAI TTAA 4 cut(s) 297, 966, 1031, 1103
SatI GCNGC 4 cut(s) 405, 681, 888, 924
Sau3AI GATC 7 cut(s) 194, 292, 436, 581, 699, 829, 1195
ScrFI CCNGG 2 cut(s) 861, 1218
SduI GDGCHC 2 cut(s) 391, 859
SfaNI GCATC 3 cut(s) 18, 168, 705
SmiMI CAYNNNNRTG 3 cut(s) 147, 364, 1007
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 799, 911
SsiI CCGC 3 cut(s) 795, 996, 1057
SspMI CTAG 4 cut(s) 279, 474, 792, 810
StyD4I CCNGG 2 cut(s) 859, 1216
TaaI ACNGT 6 cut(s) 12, 73, 689, 785, 854, 989
TaiI ACGT 2 cut(s) 208, 1011
TaqI TCGA 3 cut(s) 211, 1086, 1185
TasI AATT 2 cut(s) 799, 911
TfiI GAWTC 3 cut(s) 89, 344, 978
Tru1I TTAA 4 cut(s) 297, 966, 1031, 1103
Tru9I TTAA 4 cut(s) 297, 966, 1031, 1103
TscAI CASTG 2 cut(s) 591, 848
TseFI GTSAC 4 cut(s) 355, 476, 848, 983
TseI GCWGC 4 cut(s) 404, 680, 887, 923
Tsp45I GTSAC 4 cut(s) 355, 476, 848, 983
TspDTI ATGAA 4 cut(s) 300, 719, 753, 1205
TspGWI ACGGA 2 cut(s) 105, 737
TspRI CASTG 2 cut(s) 591, 848
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 1 cut(s) 911
XceI RCATGY 1 cut(s) 1180
XmiI GTMKAC 1 cut(s) 227
XspI CTAG 4 cut(s) 279, 474, 792, 810
Zsp2I ATGCAT 2 cut(s) 720, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.