Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014003

Physical Location & Seq

Genomic Coordinates Forward (+)

11013092 .. 11017161

Gene Structure 4070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G185600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCGGATCGATATTTCCCGAACGAAATGCTAGACTTTGTGGCAGAGGCAGCAGCAGACGAGGCAGCCTCTGTAAGACCCAAGGACGCACTCACAAAACTGCTCAAGAGCTCGGCTTTGGACCTCAAAGAAACGGTGGTGAGGCAGACATGGGGATTAAGTGGAAAGCGTGTGGAAGATTATACTTTGTACACAGGGGTTCTTGGGACTGCCTTCTTGGCCTTTAAAGCCTACCAAGTCACCAAGAATGAAAATGATCTTAAATTGTGCTGTGAAATAGTCAAAGCCTGTGATTCTGCTTCCAGAGGATCTGGGCGTGTGTCATTCACATGTGGGCGGGCTGGCGTTTGTGCCCTTGGTGCTGTCGTGGCAAAGCATGCTGGTGATCAAATGTTACTTGACCGCTACTTATCACAATTTAAAGAGATCAAGCTGCCTAGTGATCTTCCAAATGAGTTATTATATGGTAGAGCTGGGTTCTTATGGGCCTGTTCATTCTTAAACAAGCATATAGGAAACGGGACAATTTCTAATACTTACATGAGATCAGTTGTGGATGAAATTATAAAGGCTGGTAGACAATTGGCTAAGAAGGGACGAAGCTCATTGATGTACGAATGGCATGGGAAGAAATACTGGGGTGCTGCCCATGGACTGGCAGGGATTATGCATGTTTTGATGAGCATGCAACTCAAACCTGATGAGGTGGAGGATGTTAAGGGTACTCTCCGTTACATGATTAAGAATCGTTTTCCCAGCGGCAACTTTCCTTCAAGTGAAGGAAGTGAATCAGACCGTCTTGTGCACTGGTGCCATGGTGCTCCTGGAGTTGCTCTTACACTTGTGAGAGCAGCTGAGGTTTTTGGAGACTTGGAGTTTCTGCAAGCTGCCATAGATGCAGGGGAGGTGGTGTGGAACCGGGGCCTCCTAAAGCGAGTTGGCATTTGCCATGGCATCAGTGGGAACACTTATGTGTTTCTTTCACTCTACCGATTAACGGGTAAGGTGGAATACTTGTACAGAGCCAAAGCATTTGCTTGCTTTCTACATGATAGAGCGCTAAATCTCATATCAGAGGGGGCGATGCATGGAGGAGATCGGCCCTATTCCCTATTTGAAGGTGTTGGAGGAATGGCTCATCTCCTTTTGGACATGACTGAACCATCTGAAGCACGGTTTCCTGCTTATGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0008289 GO:0009787 GO:0009791 GO:0009966 GO:0010154 GO:0010162 GO:0010231 GO:0010427 GO:0010431 GO:0010646 GO:0016020 GO:0019840 GO:0019898 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0031406 GO:0032501 GO:0032502 GO:0032504 GO:0033293 GO:0036094 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0044425 GO:0044464 GO:0048316 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071695 GO:0071944 GO:0097437 GO:1901419 GO:1905957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LANC_like

Protein Analysis

399

Amino Acids

43.88

Weight (kDa)

8.26

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52920
fragaria_vesca	FvH4_3g20590 FvH4_3g20590
malus_domestica	MD03G1223900.v1.1
prunus_persica	Prupe.4G185600_v2.0.a1
pyrus_communis	pycom03g17230
rosa_chinensis	RchiOBHm_Chr5g0034611
rosa_laevigata	RLG00000033558
rosa_multiflora	Rmu_sc0017377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00045710
rosa_rugosa	Rorug05G0147200
rosa_samantha	Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana	Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	810
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	577
AciI	CCGC	4 cut(s)	5, 337, 403, 759
AclWI	GGATC	2 cut(s)	15, 316
AcuI	CTGAAG	1 cut(s)	1188
AfaI	GTAC	4 cut(s)	191, 614, 724, 1019
AfeI	AGCGCT	1 cut(s)	1059
AfiI	CCNNNNNNNGG	2 cut(s)	655, 997
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	774, 1118
AjnI	CCWGG	1 cut(s)	823
AleI	CACNNNNGTG	1 cut(s)	971
AluBI	AGCT	6 cut(s)	111, 433, 473, 603, 854, 887
AluI	AGCT	6 cut(s)	111, 433, 473, 603, 854, 887
Alw21I	GWGCWC	3 cut(s)	113, 807, 823
Alw26I	GTCTC	1 cut(s)	861
Alw44I	GTGCAC	1 cut(s)	803
AlwI	GGATC	2 cut(s)	15, 316
AlwNI	CAGNNNCTG	1 cut(s)	71
Aor51HI	AGCGCT	1 cut(s)	1059
AoxI	GGCC	4 cut(s)	219, 486, 922, 1100
ApaLI	GTGCAC	1 cut(s)	803
ApeKI	GCWGC	7 cut(s)	50, 53, 65, 433, 644, 851, 887
AspLEI	GCGC	1 cut(s)	1060
AspS9I	GGNCC	4 cut(s)	121, 486, 922, 1101
AsuC2I	CCSGG	1 cut(s)	920
AsuHPI	GGTGA	3 cut(s)	151, 232, 395
AvaII	GGWCC	1 cut(s)	121
BaeGI	GKGCMC	2 cut(s)	355, 807
BanI	GGYRCC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	3 cut(s)	113, 807, 823
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	7 cut(s)	62, 65, 77, 420, 631, 863, 874
BccI	CCATC	1 cut(s)	1171
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	1 cut(s)	861
BfaI	CTAG	2 cut(s)	32, 438
BfoI	RGCGCY	1 cut(s)	1061
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	8 cut(s)	51, 54, 66, 434, 645, 760, 852, 888
BlsI	GCNGC	8 cut(s)	52, 55, 67, 435, 646, 761, 853, 889
Bme1390I	CCNGG	2 cut(s)	825, 920
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	4 cut(s)	121, 486, 922, 1101
BmiI	GGNNCC	3 cut(s)	812, 917, 923
BmrFI	CCNGG	2 cut(s)	825, 920
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	3 cut(s)	886, 963, 1074
BmuI	ACTGGG	1 cut(s)	646
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	920
Bsa29I	ATCGAT	1 cut(s)	10
BsaJI	CCNNGG	6 cut(s)	81, 355, 649, 814, 919, 949
BsaXI	ACNNNNNCTCC	2 cut(s)	896, 926
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 997
Bse1I	ACTGG	3 cut(s)	641, 660, 812
BseBI	CCWGG	1 cut(s)	825
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	6 cut(s)	81, 355, 649, 814, 919, 949
BseGI	GGATG	2 cut(s)	562, 718
BseLI	CCNNNNNNNGG	2 cut(s)	655, 997
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	3 cut(s)	641, 660, 812
BseRI	GAGGAG	1 cut(s)	1107
BseSI	GKGCMC	2 cut(s)	355, 807
BseXI	GCAGC	7 cut(s)	62, 65, 77, 420, 631, 863, 874
BseYI	CCCAGC	2 cut(s)	473, 755
BshFI	GGCC	4 cut(s)	221, 488, 924, 1102
BshNI	GGYRCC	1 cut(s)	810
BshVI	ATCGAT	1 cut(s)	10
BsiHKAI	GWGCWC	3 cut(s)	113, 807, 823
BsiSI	CCGG	1 cut(s)	919
BslFI	GGGAC	3 cut(s)	220, 535, 609
BslI	CCNNNNNNNGG	2 cut(s)	655, 997
BsmAI	GTCTC	1 cut(s)	861
BsmFI	GGGAC	3 cut(s)	220, 535, 609
BsnI	GGCC	4 cut(s)	221, 488, 924, 1102
Bsp1286I	GDGCHC	4 cut(s)	113, 355, 807, 823
Bsp1407I	TGTACA	2 cut(s)	189, 1017
Bsp143I	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
Bsp19I	CCATGG	3 cut(s)	649, 814, 949
BspACI	CCGC	4 cut(s)	5, 337, 403, 759
BspANI	GGCC	4 cut(s)	221, 488, 924, 1102
BspCNI	CTCAG	1 cut(s)	847
BspDI	ATCGAT	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	812, 917, 923
BspPI	GGATC	2 cut(s)	15, 316
BspT107I	GGYRCC	1 cut(s)	810
BsrGI	TGTACA	2 cut(s)	189, 1017
BsrI	ACTGG	3 cut(s)	641, 660, 812
BssECI	CCNNGG	6 cut(s)	81, 355, 649, 814, 919, 949
BssMI	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
BssT1I	CCWWGG	5 cut(s)	81, 355, 649, 814, 949
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	3 cut(s)	136, 797, 1176
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	2 cut(s)	189, 1017
BstC8I	GCNNGC	6 cut(s)	339, 343, 378, 686, 885, 1039
BstDEI	CTNAG	2 cut(s)	588, 855
BstDSI	CCRYGG	3 cut(s)	649, 814, 949
BstF5I	GGATG	2 cut(s)	562, 718
BstH2I	RGCGCY	1 cut(s)	1061
BstHHI	GCGC	1 cut(s)	1060
BstKTI	GATC	8 cut(s)	10, 259, 311, 388, 429, 445, 548, 1099
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 62, 218, 227, 359, 368, 377, 896
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	4 cut(s)	333, 380, 674, 688
BstSCI	CCNGG	2 cut(s)	823, 918
BstSLI	GKGCMC	2 cut(s)	355, 807
BstV1I	GCAGC	7 cut(s)	62, 65, 77, 420, 631, 863, 874
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	4 cut(s)	221, 488, 924, 1102
BsuTUI	ATCGAT	1 cut(s)	10
BtgI	CCRYGG	3 cut(s)	649, 814, 949
BtgZI	GCGATG	1 cut(s)	1097
BtsCI	GGATG	2 cut(s)	562, 718
BtsIMutI	CAGTG	2 cut(s)	805, 964
Cac8I	GCNNGC	6 cut(s)	339, 343, 378, 686, 885, 1039
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	1060
Cfr13I	GGNCC	4 cut(s)	121, 486, 922, 1101
ClaI	ATCGAT	1 cut(s)	10
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	190, 613, 723, 1018
CviQI	GTAC	4 cut(s)	190, 613, 723, 1018
DdeI	CTNAG	2 cut(s)	588, 855
DpnI	GATC	8 cut(s)	9, 258, 310, 387, 428, 444, 547, 1098
DpnII	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
DraI	TTTAAA	2 cut(s)	226, 421
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	5 cut(s)	81, 355, 649, 814, 949
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	121
Eco47III	AGCGCT	1 cut(s)	1059
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	1188
EcoICRI	GAGCTC	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	922
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	5 cut(s)	81, 355, 649, 814, 949
EcoT22I	ATGCAT	2 cut(s)	672, 1089
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	5 cut(s)	81, 355, 649, 814, 949
FaqI	GGGAC	3 cut(s)	220, 535, 609
FauI	CCCGC	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	8 cut(s)	51, 54, 66, 434, 645, 760, 852, 888
FokI	GGATG	2 cut(s)	569, 725
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	8 cut(s)	51, 54, 66, 434, 645, 760, 852, 888
FspBI	CTAG	2 cut(s)	32, 438
GlaI	GCGC	1 cut(s)	1059
GluI	GCNGC	8 cut(s)	51, 54, 66, 434, 645, 760, 852, 888
GsaI	CCCAGC	2 cut(s)	477, 759
GsuI	CTGGAG	1 cut(s)	846
HaeII	RGCGCY	1 cut(s)	1061
HaeIII	GGCC	4 cut(s)	221, 488, 924, 1102
HapII	CCGG	1 cut(s)	919
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	1060
Hin6I	GCGC	1 cut(s)	1058
HinP1I	GCGC	1 cut(s)	1058
HinfI	GANTC	3 cut(s)	293, 745, 788
HpaII	CCGG	1 cut(s)	919
HphI	GGTGA	3 cut(s)	151, 232, 395
Hpy166II	GTNNAC	3 cut(s)	192, 578, 805
Hpy188I	TCNGA	3 cut(s)	793, 1075, 1168
Hpy188III	TCNNGA	3 cut(s)	19, 106, 303
Hpy8I	GTNNAC	3 cut(s)	192, 578, 805
HpyAV	CCTTC	5 cut(s)	223, 586, 773, 780, 1112
HpyCH4III	ACNGT	3 cut(s)	136, 797, 1176
HpyCH4V	TGCA	6 cut(s)	670, 688, 805, 883, 899, 1087
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 62, 218, 227, 359, 368, 377, 896
HpyF3I	CTNAG	2 cut(s)	588, 855
HspAI	GCGC	1 cut(s)	1058
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
LmnI	GCTCC	1 cut(s)	826
Lsp1109I	GCAGC	7 cut(s)	62, 65, 77, 420, 631, 863, 874
LweI	GCATC	3 cut(s)	886, 963, 1074
MaeI	CTAG	2 cut(s)	32, 438
MaeIII	GTNAC	3 cut(s)	238, 393, 731
MalI	GATC	8 cut(s)	9, 258, 310, 387, 428, 444, 547, 1098
MboI	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
MboII	GAAGA	3 cut(s)	188, 437, 640
MfeI	CAATTG	1 cut(s)	581
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	4 cut(s)	113, 355, 807, 823
MluCI	AATT	5 cut(s)	263, 416, 525, 561, 581
MmeI	TCCRAC	1 cut(s)	1105
Mph1103I	ATGCAT	2 cut(s)	672, 1089
MseI	TTAA	9 cut(s)	158, 225, 261, 420, 500, 717, 741, 995, 1195
MslI	CAYNNNNRTG	3 cut(s)	328, 381, 971
MspA1I	CMGCKG	2 cut(s)	759, 854
MspI	CCGG	1 cut(s)	919
MspR9I	CCNGG	2 cut(s)	825, 920
MunI	CAATTG	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	825
MwoI	GCNNNNNNNGC	8 cut(s)	50, 62, 218, 227, 359, 368, 377, 896
NciI	CCSGG	1 cut(s)	920
NcoI	CCATGG	3 cut(s)	649, 814, 949
NdeII	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
NlaIV	GGNNCC	3 cut(s)	812, 917, 923
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	2 cut(s)	672, 1089
NspI	RCATGY	4 cut(s)	333, 380, 674, 688
OliI	CACNNNNGTG	1 cut(s)	971
PaeI	GCATGC	2 cut(s)	380, 688
PciI	ACATGT	1 cut(s)	329
PfeI	GAWTC	3 cut(s)	293, 745, 788
PflMI	CCANNNNNTGG	1 cut(s)	655
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	8 cut(s)	52, 55, 67, 435, 646, 761, 853, 889
PscI	ACATGT	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	823
PspFI	CCCAGC	2 cut(s)	473, 755
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	3 cut(s)	812, 917, 923
PspPI	GGNCC	4 cut(s)	121, 486, 922, 1101
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	4 cut(s)	191, 614, 724, 1019
RsaNI	GTAC	4 cut(s)	190, 613, 723, 1018
RseI	CAYNNNNRTG	3 cut(s)	328, 381, 971
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	9 cut(s)	158, 225, 261, 420, 500, 717, 741, 995, 1195
SatI	GCNGC	8 cut(s)	51, 54, 66, 434, 645, 760, 852, 888
Sau3AI	GATC	8 cut(s)	7, 256, 308, 385, 426, 442, 545, 1096
Sau96I	GGNCC	4 cut(s)	121, 486, 922, 1101
ScrFI	CCNGG	2 cut(s)	825, 920
SduI	GDGCHC	4 cut(s)	113, 355, 807, 823
SfaNI	GCATC	3 cut(s)	886, 963, 1074
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	3 cut(s)	328, 381, 971
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	2 cut(s)	380, 688
Sse9I	AATT	5 cut(s)	263, 416, 525, 561, 581
SsiI	CCGC	4 cut(s)	5, 337, 403, 759
SspMI	CTAG	2 cut(s)	32, 438
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	823, 918
StyI	CCWWGG	5 cut(s)	81, 355, 649, 814, 949
TaaI	ACNGT	3 cut(s)	136, 797, 1176
TaqI	TCGA	1 cut(s)	10
TasI	AATT	5 cut(s)	263, 416, 525, 561, 581
TatI	WGTACW	2 cut(s)	189, 1017
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	3 cut(s)	293, 745, 788
Tru1I	TTAA	9 cut(s)	158, 225, 261, 420, 500, 717, 741, 995, 1195
Tru9I	TTAA	9 cut(s)	158, 225, 261, 420, 500, 717, 741, 995, 1195
TscAI	CASTG	2 cut(s)	812, 964
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	7 cut(s)	50, 53, 65, 433, 644, 851, 887
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	264, 483, 573
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	2 cut(s)	812, 964
Van91I	CCANNNNNTGG	1 cut(s)	655
VneI	GTGCAC	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	121
XceI	RCATGY	4 cut(s)	333, 380, 674, 688
XcmI	CCANNNNNNNNNTGG	2 cut(s)	821, 956
XmiI	GTMKAC	1 cut(s)	577
XspI	CTAG	2 cut(s)	32, 438
Zsp2I	ATGCAT	2 cut(s)	672, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.