Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014003

Physical Location & Seq

Genomic Coordinates Forward (+)

28454227 .. 28457728

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCAGACATGGGGTGTGAGTGGCAAGCGTGTGGAAGATTATACTATGTATACAGGGGCTCTTGGAACTGCTTGGTTGGCCTTTAAGGCTTACCAAGTCACCAACAACCACGCTGATCTTAAATTATGCTCTGACATTGTTAAGGCCTGTGATATAGCTTCTAGAGATTCTGGGTATGTGTCATTCATATGTGGGCGGGCTGGCGTTTGTGCCCTCGGTGCTGTGGTGGCAAAGCATGCTGGTGATGAAATGCTACTTGGCCACTACTTATCAAAATTTAAAGAGATCAAGCTCTCTGGCAATCTTCCAAATGAGTTATTATATGGCAGAGCTGGGTACTTATGGGCCTGTTCATTCTTAAACAAGAATGTTGGAAATGGAACAATTTCTACTACTCGCATAAGATCAGTTGTGGATGAAATTATAAAGGATGGTAGACAATTGGCCAAGAAGGGACGGAGCTCATTGATGTACAAATGGCATGGGAAGAAATACTGGGGTGCTGCCCATGGTCTGGCGGGAATTATGTATGTTTTGATGACCGTGCAACTGAAACCTGAGGAGGTTGAGGATGTCAAGGGTACTCTACGTTACATGATTAAGAATCGCTTTCCCAGCGGTAACTTTCTTTCAAGTGAAGGAAGTGAATCAGACCGTCTTGTGCACTGGTGCCATGGTGCTCCTGGAGTTGCTCTTACACTTGTTAGAGCAGCTGAGGTTTTCGGAGATGAGGAATTTGTGCAGGCGGCTATTGATGCAGGAGAGGTGGTGTGGAGACGGGGTCTGCTAAAGCGAGTTGGCCTATGTCATGGCATAAGTGGGAACACTTACGTGTTTCTTTCACTCTACCAATTAACAGGTAAGGTGGAATACTTGTACAGGGCCAAAGCATTCGCTTGCTTTTTGTATGACAAAGGGCTAAAACTCATATCAGAGGGAAGGATGCACGGAGGTGACCGCCCCTATTCCCTGTTTGAGGGTGTTGGAGGAATGGCTCATCTCTTTTTGGACATGACTGAACCATCTGAAGCTCGGTTTCCCGGATATGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0008289 GO:0009787 GO:0009791 GO:0009966 GO:0010154 GO:0010162 GO:0010231 GO:0010427 GO:0010431 GO:0010646 GO:0016020 GO:0019840 GO:0019898 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0031406 GO:0032501 GO:0032502 GO:0032504 GO:0033293 GO:0036094 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0044425 GO:0044464 GO:0048316 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071695 GO:0071944 GO:0097437 GO:1901419 GO:1905957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LANC_like

Protein Analysis

351

Amino Acids

38.79

Weight (kDa)

8.85

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LANC_like	PF05147	11 - 351	2.2e-99	Lanthionine synthetase C-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52920
fragaria_vesca	FvH4_3g20590 FvH4_3g20590
malus_domestica	MD03G1223900.v1.1
prunus_persica	Prupe.4G185600_v2.0.a1
pyrus_communis	pycom03g17230
rosa_chinensis	RchiOBHm_Chr5g0034611
rosa_laevigata	RLG00000033558
rosa_multiflora	Rmu_sc0017377.1_g000004
rosa_roxburghii	Rroxscaffold_1G00045710
rosa_rugosa	Rorug05G0147200
rosa_samantha	Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana	Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	669
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccI	GTMKAC	2 cut(s)	50, 436
AciI	CCGC	5 cut(s)	196, 518, 618, 746, 958
AcoI	YGGCCR	2 cut(s)	259, 444
AcsI	RAATTY	2 cut(s)	275, 734
AcuI	CTGAAG	1 cut(s)	1047
AfaI	GTAC	4 cut(s)	338, 473, 583, 878
AfiI	CCNNNNNNNGG	2 cut(s)	514, 976
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	1 cut(s)	633
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AleI	CACNNNNGTG	2 cut(s)	830, 951
AluBI	AGCT	6 cut(s)	158, 292, 332, 462, 713, 1031
AluI	AGCT	6 cut(s)	158, 292, 332, 462, 713, 1031
Alw21I	GWGCWC	3 cut(s)	464, 666, 682
Alw26I	GTCTC	1 cut(s)	769
Alw44I	GTGCAC	1 cut(s)	662
AoxI	GGCC	7 cut(s)	78, 144, 259, 345, 444, 799, 882
ApaLI	GTGCAC	1 cut(s)	662
ApeKI	GCWGC	2 cut(s)	503, 710
ApoI	RAATTY	2 cut(s)	275, 734
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	345, 882
AsuC2I	CCSGG	1 cut(s)	1041
AsuHPI	GGTGA	3 cut(s)	91, 254, 965
AxyI	CCTNAGG	1 cut(s)	558
BaeGI	GKGCMC	2 cut(s)	214, 666
BalI	TGGCCA	2 cut(s)	261, 446
BanI	GGYRCC	1 cut(s)	669
BanII	GRGCYC	2 cut(s)	61, 464
Bbv12I	GWGCWC	3 cut(s)	464, 666, 682
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	490, 722
BccI	CCATC	2 cut(s)	425, 1030
BciT130I	CCWGG	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	1041
BcoDI	GTCTC	1 cut(s)	769
BfaI	CTAG	1 cut(s)	162
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	3 cut(s)	504, 711, 747
BlsI	GCNGC	3 cut(s)	505, 712, 748
Bme1390I	CCNGG	2 cut(s)	684, 1041
BmgT120I	GGNCC	2 cut(s)	345, 882
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	2 cut(s)	684, 1041
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	745, 933
BmuI	ACTGGG	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	1041
BsaAI	YACGTR	1 cut(s)	832
BsaJI	CCNNGG	3 cut(s)	214, 508, 673
BsaXI	ACNNNNNCTCC	4 cut(s)	753, 766, 783, 796
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 976
Bse1I	ACTGG	2 cut(s)	500, 671
Bse21I	CCTNAGG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	3 cut(s)	214, 508, 673
BseGI	GGATG	4 cut(s)	421, 436, 577, 948
BseLI	CCNNNNNNNGG	2 cut(s)	514, 976
BseMII	CTCAG	2 cut(s)	549, 705
BseNI	ACTGG	2 cut(s)	500, 671
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	2 cut(s)	214, 666
BseXI	GCAGC	2 cut(s)	490, 722
BseYI	CCCAGC	2 cut(s)	332, 614
BsgI	GTGCAG	1 cut(s)	761
BshFI	GGCC	7 cut(s)	80, 146, 261, 347, 446, 801, 884
BshNI	GGYRCC	1 cut(s)	669
BsiHKAI	GWGCWC	3 cut(s)	464, 666, 682
BsiSI	CCGG	1 cut(s)	1041
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	514, 976
BsmAI	GTCTC	1 cut(s)	769
BsmBI	CGTCTC	1 cut(s)	769
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	7 cut(s)	80, 146, 261, 347, 446, 801, 884
Bsp1286I	GDGCHC	5 cut(s)	61, 214, 464, 666, 682
Bsp1407I	TGTACA	2 cut(s)	471, 876
Bsp143I	GATC	3 cut(s)	115, 285, 404
Bsp19I	CCATGG	2 cut(s)	508, 673
BspACI	CCGC	5 cut(s)	196, 518, 618, 746, 958
BspANI	GGCC	7 cut(s)	80, 146, 261, 347, 446, 801, 884
BspCNI	CTCAG	2 cut(s)	550, 706
BspLI	GGNNCC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	669
BsrGI	TGTACA	2 cut(s)	471, 876
BsrI	ACTGG	2 cut(s)	500, 671
BssECI	CCNNGG	3 cut(s)	214, 508, 673
BssMI	GATC	3 cut(s)	115, 285, 404
BssNAI	GTATAC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	508, 673
Bst1107I	GTATAC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	544, 656
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstAUI	TGTACA	2 cut(s)	471, 876
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	6 cut(s)	26, 198, 202, 237, 744, 898
BstDEI	CTNAG	2 cut(s)	558, 714
BstDSI	CCRYGG	2 cut(s)	508, 673
BstEII	GGTNACC	1 cut(s)	953
BstENI	CCTNNNNNAGG	1 cut(s)	974
BstF5I	GGATG	4 cut(s)	421, 436, 577, 948
BstKTI	GATC	3 cut(s)	118, 288, 407
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	3 cut(s)	115, 285, 404
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 86, 218, 227, 236, 615, 755
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	953
BstSCI	CCNGG	2 cut(s)	682, 1039
BstSLI	GKGCMC	2 cut(s)	214, 666
BstV1I	GCAGC	2 cut(s)	490, 722
BstZ17I	GTATAC	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	7 cut(s)	80, 146, 261, 347, 446, 801, 884
BtgI	CCRYGG	2 cut(s)	508, 673
BtsCI	GGATG	4 cut(s)	421, 436, 577, 948
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	6 cut(s)	26, 198, 202, 237, 744, 898
Cfr13I	GGNCC	2 cut(s)	345, 882
Csp6I	GTAC	4 cut(s)	337, 472, 582, 877
CviAII	CATG	8 cut(s)	9, 236, 482, 509, 595, 674, 809, 1012
CviQI	GTAC	4 cut(s)	337, 472, 582, 877
DdeI	CTNAG	2 cut(s)	558, 714
DpnI	GATC	3 cut(s)	117, 287, 406
DpnII	GATC	3 cut(s)	115, 285, 404
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	2 cut(s)	259, 444
Ecl136II	GAGCTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	508, 673
Eco147I	AGGCCT	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	61, 464
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	1047
Eco81I	CCTNAGG	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	953
EcoICRI	GAGCTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	974
EcoO65I	GGTNACC	1 cut(s)	953
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	508, 673
EcoT38I	GRGCYC	2 cut(s)	61, 464
ErhI	CCWWGG	2 cut(s)	508, 673
Esp3I	CGTCTC	1 cut(s)	769
FaeI	CATG	8 cut(s)	12, 239, 485, 512, 598, 677, 812, 1015
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	8 cut(s)	8, 235, 481, 508, 594, 673, 808, 1011
FauI	CCCGC	2 cut(s)	189, 511
FauNDI	CATATG	1 cut(s)	188
FblI	GTMKAC	2 cut(s)	50, 436
Fnu4HI	GCNGC	3 cut(s)	504, 711, 747
FokI	GGATG	4 cut(s)	428, 443, 584, 955
FriOI	GRGCYC	2 cut(s)	61, 464
Fsp4HI	GCNGC	3 cut(s)	504, 711, 747
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	3 cut(s)	504, 711, 747
GsaI	CCCAGC	2 cut(s)	336, 618
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	7 cut(s)	80, 146, 261, 347, 446, 801, 884
HapII	CCGG	1 cut(s)	1041
Hin1II	CATG	8 cut(s)	12, 239, 485, 512, 598, 677, 812, 1015
HinfI	GANTC	3 cut(s)	167, 604, 647
HpaII	CCGG	1 cut(s)	1041
HphI	GGTGA	3 cut(s)	91, 254, 965
Hpy166II	GTNNAC	3 cut(s)	51, 437, 664
Hpy188I	TCNGA	5 cut(s)	133, 652, 725, 934, 1027
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	3 cut(s)	51, 437, 664
HpyAV	CCTTC	3 cut(s)	445, 632, 933
HpyCH4III	ACNGT	2 cut(s)	544, 656
HpyCH4IV	ACGT	2 cut(s)	589, 831
HpyCH4V	TGCA	6 cut(s)	4, 547, 664, 742, 758, 946
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 86, 218, 227, 236, 615, 755
HpyF3I	CTNAG	2 cut(s)	558, 714
HpySE526I	ACGT	2 cut(s)	589, 831
Hsp92II	CATG	8 cut(s)	12, 239, 485, 512, 598, 677, 812, 1015
Kzo9I	GATC	3 cut(s)	115, 285, 404
LmnI	GCTCC	2 cut(s)	459, 685
Lsp1109I	GCAGC	2 cut(s)	490, 722
LweI	GCATC	2 cut(s)	745, 933
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	589, 831
MaeIII	GTNAC	4 cut(s)	97, 590, 620, 953
MalI	GATC	3 cut(s)	117, 287, 406
MboI	GATC	3 cut(s)	115, 285, 404
MboII	GAAGA	3 cut(s)	47, 296, 499
MfeI	CAATTG	1 cut(s)	440
MhlI	GDGCHC	5 cut(s)	61, 214, 464, 666, 682
MlsI	TGGCCA	2 cut(s)	261, 446
MluCI	AATT	8 cut(s)	122, 275, 384, 420, 440, 522, 734, 851
MluNI	TGGCCA	2 cut(s)	261, 446
MmeI	TCCRAC	2 cut(s)	352, 964
Mox20I	TGGCCA	2 cut(s)	261, 446
MroXI	GAANNNNTTC	1 cut(s)	385
MscI	TGGCCA	2 cut(s)	261, 446
MseI	TTAA	8 cut(s)	84, 120, 141, 279, 359, 600, 854, 1054
MslI	CAYNNNNRTG	4 cut(s)	187, 240, 830, 951
Msp20I	TGGCCA	2 cut(s)	261, 446
MspA1I	CMGCKG	2 cut(s)	618, 713
MspI	CCGG	1 cut(s)	1041
MspR9I	CCNGG	2 cut(s)	684, 1041
MunI	CAATTG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	890
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	7 cut(s)	77, 86, 218, 227, 236, 615, 755
NciI	CCSGG	1 cut(s)	1041
NcoI	CCATGG	2 cut(s)	508, 673
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	3 cut(s)	115, 285, 404
NlaIII	CATG	8 cut(s)	12, 239, 485, 512, 598, 677, 812, 1015
NlaIV	GGNNCC	1 cut(s)	671
NmuCI	GTSAC	2 cut(s)	97, 953
NspI	RCATGY	1 cut(s)	239
OliI	CACNNNNGTG	2 cut(s)	830, 951
PaeI	GCATGC	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	146
PctI	GAATGC	1 cut(s)	890
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	167, 604, 647
PflFI	GACNNNGTC	1 cut(s)	780
PflMI	CCANNNNNTGG	1 cut(s)	514
PfoI	TCCNGGA	2 cut(s)	682, 1039
PkrI	GCNGC	3 cut(s)	505, 712, 748
Ppu21I	YACGTR	1 cut(s)	832
PsiI	TTATAA	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	682
PspEI	GGTNACC	1 cut(s)	953
PspFI	CCCAGC	2 cut(s)	332, 614
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	2 cut(s)	345, 882
PsrI	GAACNNNNNNTAC	2 cut(s)	373, 405
PsyI	GACNNNGTC	1 cut(s)	780
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	4 cut(s)	338, 473, 583, 878
RsaNI	GTAC	4 cut(s)	337, 472, 582, 877
RseI	CAYNNNNRTG	4 cut(s)	187, 240, 830, 951
SacI	GAGCTC	1 cut(s)	464
SaqAI	TTAA	8 cut(s)	84, 120, 141, 279, 359, 600, 854, 1054
SatI	GCNGC	3 cut(s)	504, 711, 747
Sau3AI	GATC	3 cut(s)	115, 285, 404
Sau96I	GGNCC	2 cut(s)	345, 882
ScrFI	CCNGG	2 cut(s)	684, 1041
SduI	GDGCHC	5 cut(s)	61, 214, 464, 666, 682
SfaNI	GCATC	2 cut(s)	745, 933
SmiMI	CAYNNNNRTG	4 cut(s)	187, 240, 830, 951
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	8 cut(s)	122, 275, 384, 420, 440, 522, 734, 851
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	5 cut(s)	196, 518, 618, 746, 958
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	682, 1039
StyI	CCWWGG	2 cut(s)	508, 673
TaaI	ACNGT	2 cut(s)	544, 656
TaiI	ACGT	2 cut(s)	592, 834
TasI	AATT	8 cut(s)	122, 275, 384, 420, 440, 522, 734, 851
TatI	WGTACW	2 cut(s)	471, 876
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	3 cut(s)	167, 604, 647
Tru1I	TTAA	8 cut(s)	84, 120, 141, 279, 359, 600, 854, 1054
Tru9I	TTAA	8 cut(s)	84, 120, 141, 279, 359, 600, 854, 1054
TscAI	CASTG	1 cut(s)	671
TseFI	GTSAC	2 cut(s)	97, 953
TseI	GCWGC	2 cut(s)	503, 710
Tsp45I	GTSAC	2 cut(s)	97, 953
TspDTI	ATGAA	4 cut(s)	175, 261, 342, 432
TspGWI	ACGGA	2 cut(s)	472, 963
TspRI	CASTG	1 cut(s)	671
Tth111I	GACNNNGTC	1 cut(s)	780
Van91I	CCANNNNNTGG	1 cut(s)	514
VneI	GTGCAC	1 cut(s)	662
XagI	CCTNNNNNAGG	1 cut(s)	974
XapI	RAATTY	2 cut(s)	275, 734
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XmiI	GTMKAC	2 cut(s)	50, 436
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.