pycom03g17230

lanC-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0014003
Physical Location & Seq
Reverse (-)
18401531 .. 18404567
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17230.1

Sequence Viewer

Length: 1233 bp
ATGGCCGACCGATTTTTCCGGAACGAAATGCCAGACTTCTTGGCAGAGCCACCACCGGACGCGGCAGCGTCCGAAAGCCCCAAAGACTCGCTAACAAACCTCCTCCACCTTCCTTACAGAACACTCTCCGACATACTCAAGAGCTCTGCTTTGGACCTCAAAGAAACGGTCGTGAGGCAGACGTGGGGTTTGGGTGGAAAGCGTGTGGAAGATTATAGTTTGTACACAGGGGCTCTTGGGACTGCTTTCTTGGCCTTCAAGGCTTACCAAGTTACAAAGAATGAGAGCGATCTTAAATTGTGCTCTGAGATTGTTAAGGCATGTGATTCTGCTTCTACGGGTTCCAGGCGTGTGTCATTCATATGTGGGCGGGCTGGCGTCTGTGCCCTTGGTGCTGTTGTTGCAAAGCATACTGGTGATAAAATGTTACTTGACCGCTACATATCAAAATTCAAAGAGCAGATCAAGCTGTCTAGTGATCTTCCAAATGAGTTATTATACGGGAGAGCTGGGTTCTTATGGGCCTGTTCCTTTTTGAACAAGCATATTGGAAATGGGACAATTTCTACTACTCGCATGAGATCAGTTGTGGATGAAATTATCAAGGCTGGTAGACAATTGGCCAAGAAGGGACGAAGCTCATTGATGTACGAGTGGCATGGAAAGAAATACTGGGGTGCTGCCCATGGATTAGCAGGTATTATGTATGTTTTGATGAGCACAGAACTGAAACCTGATGAGGTGGAGGATGTCAAAGGTACTCTGCGTTACATGATTAAGAATCGTTTTCCAAGCGGCAACTTTCCTTCAAGTGAAGGAAGTGAATCAGACCGTCTTGTGCACTGGTGCCATGGTGCTCCAGGAGTTGCTCTTACACTTCTGAGAGCAGCTGAGGTTTTCGGAGATCAAGAGTTCCTGCAAGCTGCTATAGATGCAGGGGAGGTGGTGTGGAACCGGGGTCTGCTGAAGCGAGTTGGCATTTGTCATGGCATCAGTGGGAACACCTATGTGTTTCTTTCACTCTACCGGTTAACGGGTAAGGTGGAATACTTGTACAGGGCCAAAGCATTTGCTTGCTTTTTACATGATAGAGCCTTAAGACTCATATCAGAGGGTACGATGCATGGAGGTGATCGGCCTTATTCTCTATTCGAAGGTGTTGGTGGAATGGCTCATCTCCTTCTGGACATGACTGAACCGTCTGAAGCACGGTTTCCTGCTTATGAGCTTTAA

Protein Analysis

411

Amino Acids

45.38

Weight (kDa)

8.63

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 69 - 410 6.6e-102 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52920
fragaria_vesca FvH4_3g20590 FvH4_3g20590
malus_domestica MD03G1223900.v1.1
prunus_persica Prupe.4G185600_v2.0.a1
pyrus_communis pycom03g17230
rosa_chinensis RchiOBHm_Chr5g0034611
rosa_laevigata RLG00000033558
rosa_multiflora Rmu_sc0017377.1_g000004
rosa_roxburghii Rroxscaffold_1G00045710
rosa_rugosa Rorug05G0147200
rosa_samantha Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1198
Acc36I ACCTGC 1 cut(s) 686
AccB1I GGYRCC 1 cut(s) 846
AccI GTMKAC 1 cut(s) 613
AccII CGCG 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 4 cut(s) 62, 370, 436, 795
AcoI YGGCCR 2 cut(s) 3, 621
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 2 cut(s) 986, 1224
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 5 cut(s) 224, 650, 760, 1055, 1117
AfiI CCNNNNNNNGG 1 cut(s) 1033
AflII CTTAAG 1 cut(s) 1096
AgeI ACCGGT 1 cut(s) 1026
AgsI TTSAA 4 cut(s) 259, 454, 538, 810
AjiI CACGTC 1 cut(s) 183
AjnI CCWGG 2 cut(s) 344, 859
AleI CACNNNNGTG 1 cut(s) 1007
AluBI AGCT 7 cut(s) 144, 469, 509, 639, 890, 923, 1228
AluI AGCT 7 cut(s) 144, 469, 509, 639, 890, 923, 1228
Alw21I GWGCWC 5 cut(s) 146, 305, 722, 843, 859
Alw44I GTGCAC 1 cut(s) 839
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 6 cut(s) 3, 252, 522, 621, 1059, 1136
ApaLI GTGCAC 1 cut(s) 839
ApeKI GCWGC 4 cut(s) 65, 680, 887, 923
ApoI RAATTY 1 cut(s) 449
ArsI GACNNNNNNTTYG 4 cut(s) 153, 172, 185, 204
AsiGI ACCGGT 1 cut(s) 1026
AspS9I GGNCC 3 cut(s) 154, 522, 1059
AsuC2I CCSGG 1 cut(s) 956
AsuHPI GGTGA 2 cut(s) 428, 1142
AsuII TTCGAA 1 cut(s) 1152
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 2 cut(s) 388, 843
BalI TGGCCA 1 cut(s) 623
BanI GGYRCC 1 cut(s) 846
BanII GRGCYC 2 cut(s) 146, 235
Bbv12I GWGCWC 5 cut(s) 146, 305, 722, 843, 859
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 4 cut(s) 77, 667, 899, 910
BciT130I CCWGG 2 cut(s) 346, 861
BcnI CCSGG 1 cut(s) 956
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 927
BfrI CTTAAG 1 cut(s) 1096
BfuAI ACCTGC 1 cut(s) 686
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 6 cut(s) 63, 66, 681, 796, 888, 924
BlsI GCNGC 6 cut(s) 64, 67, 682, 797, 889, 925
Bme1390I CCNGG 3 cut(s) 346, 861, 956
Bme18I GGWCC 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 3 cut(s) 154, 522, 1059
BmiI GGNNCC 3 cut(s) 343, 848, 953
BmrFI CCNGG 3 cut(s) 346, 861, 956
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 3 cut(s) 922, 999, 1110
BmuI ACTGGG 1 cut(s) 682
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 1152
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 956
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 4 cut(s) 388, 685, 850, 955
BsaWI WCCGGW 3 cut(s) 18, 55, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 932, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 1033
Bse118I RCCGGY 1 cut(s) 1026
Bse1I ACTGG 3 cut(s) 418, 677, 848
BseAI TCCGGA 1 cut(s) 18
BseBI CCWGG 2 cut(s) 346, 861
BseDI CCNNGG 4 cut(s) 388, 685, 850, 955
BseGI GGATG 2 cut(s) 598, 754
BseLI CCNNNNNNNGG 1 cut(s) 1033
BseMII CTCAG 3 cut(s) 297, 872, 882
BseNI ACTGG 3 cut(s) 418, 677, 848
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 2 cut(s) 388, 843
BseXI GCAGC 4 cut(s) 77, 667, 899, 910
BseYI CCCAGC 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 2 cut(s) 10, 171
BshFI GGCC 6 cut(s) 5, 254, 524, 623, 1061, 1138
BshNI GGYRCC 1 cut(s) 846
BshTI ACCGGT 1 cut(s) 1026
BsiEI CGRYCG 2 cut(s) 10, 171
BsiHKAI GWGCWC 5 cut(s) 146, 305, 722, 843, 859
BsiSI CCGG 4 cut(s) 19, 56, 955, 1027
BslFI GGGAC 3 cut(s) 253, 571, 645
BslI CCNNNNNNNGG 1 cut(s) 1033
BsmFI GGGAC 3 cut(s) 253, 571, 645
BsnI GGCC 6 cut(s) 5, 254, 524, 623, 1061, 1138
Bsp119I TTCGAA 1 cut(s) 1152
Bsp1286I GDGCHC 7 cut(s) 146, 235, 305, 388, 722, 843, 859
Bsp13I TCCGGA 1 cut(s) 18
Bsp1407I TGTACA 2 cut(s) 222, 1053
Bsp143I GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
Bsp19I CCATGG 2 cut(s) 685, 850
BspACI CCGC 4 cut(s) 62, 370, 436, 795
BspANI GGCC 6 cut(s) 5, 254, 524, 623, 1061, 1138
BspCNI CTCAG 3 cut(s) 298, 873, 883
BspEI TCCGGA 1 cut(s) 18
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 343, 848, 953
BspMI ACCTGC 1 cut(s) 686
BspT104I TTCGAA 1 cut(s) 1152
BspT107I GGYRCC 1 cut(s) 846
BspTI CTTAAG 1 cut(s) 1096
BsrFI RCCGGY 1 cut(s) 1026
BsrGI TGTACA 2 cut(s) 222, 1053
BsrI ACTGG 3 cut(s) 418, 677, 848
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 4 cut(s) 388, 685, 850, 955
BssMI GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 3 cut(s) 388, 685, 850
Bst2UI CCWGG 2 cut(s) 346, 861
Bst4CI ACNGT 4 cut(s) 169, 833, 1200, 1212
BstACI GRCGYC 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 1096
BstAUI TGTACA 2 cut(s) 222, 1053
BstBI TTCGAA 1 cut(s) 1152
BstC8I GCNNGC 4 cut(s) 372, 376, 921, 1075
BstDEI CTNAG 3 cut(s) 306, 881, 891
BstDSI CCRYGG 2 cut(s) 685, 850
BstF5I GGATG 2 cut(s) 598, 754
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 6 cut(s) 292, 465, 481, 584, 907, 1135
BstMBI GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
BstMCI CGRYCG 2 cut(s) 10, 171
BstMWI GCNNNNNNNGC 6 cut(s) 251, 260, 392, 401, 466, 932
BstNI CCWGG 2 cut(s) 346, 861
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 344, 859, 954
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 2 cut(s) 388, 843
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 77, 667, 899, 910
BsuRI GGCC 6 cut(s) 5, 254, 524, 623, 1061, 1138
BtgI CCRYGG 2 cut(s) 685, 850
BtrI CACGTC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 598, 754
BtsIMutI CAGTG 2 cut(s) 841, 1000
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 4 cut(s) 372, 376, 921, 1075
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 3 cut(s) 154, 522, 1059
CseI GACGC 3 cut(s) 57, 68, 367
Csp6I GTAC 5 cut(s) 223, 649, 759, 1054, 1116
CspAI ACCGGT 1 cut(s) 1026
CviQI GTAC 5 cut(s) 223, 649, 759, 1054, 1116
DdeI CTNAG 3 cut(s) 306, 881, 891
DpnI GATC 6 cut(s) 291, 464, 480, 583, 906, 1134
DpnII GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
DrdI GACNNNNNNGTC 1 cut(s) 1198
DseDI GACNNNNNNGTC 1 cut(s) 1198
EaeI YGGCCR 2 cut(s) 3, 621
Ecl136II GAGCTC 1 cut(s) 144
Eco130I CCWWGG 3 cut(s) 388, 685, 850
Eco24I GRGCYC 2 cut(s) 146, 235
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 144
Eco57I CTGAAG 2 cut(s) 986, 1224
EcoICRI GAGCTC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 344, 859
EcoT14I CCWWGG 3 cut(s) 388, 685, 850
EcoT22I ATGCAT 1 cut(s) 1125
EcoT38I GRGCYC 2 cut(s) 146, 235
ErhI CCWWGG 3 cut(s) 388, 685, 850
FaqI GGGAC 3 cut(s) 253, 571, 645
FauI CCCGC 1 cut(s) 363
FauNDI CATATG 1 cut(s) 362
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 6 cut(s) 63, 66, 681, 796, 888, 924
FokI GGATG 2 cut(s) 605, 761
FriOI GRGCYC 2 cut(s) 146, 235
Fsp4HI GCNGC 6 cut(s) 63, 66, 681, 796, 888, 924
FspBI CTAG 1 cut(s) 474
GluI GCNGC 6 cut(s) 63, 66, 681, 796, 888, 924
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 6 cut(s) 5, 254, 524, 623, 1061, 1138
HapII CCGG 4 cut(s) 19, 56, 955, 1027
HgaI GACGC 3 cut(s) 57, 68, 367
Hin1I GRCGYC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HinfI GANTC 5 cut(s) 86, 326, 781, 824, 1101
HpaI GTTAAC 1 cut(s) 1032
HpaII CCGG 4 cut(s) 19, 56, 955, 1027
HphI GGTGA 2 cut(s) 428, 1142
Hpy166II GTNNAC 4 cut(s) 225, 614, 841, 1032
Hpy188I TCNGA 8 cut(s) 73, 130, 307, 829, 882, 902, 1111, 1204
Hpy188III TCNNGA 5 cut(s) 19, 139, 172, 908, 1184
Hpy8I GTNNAC 4 cut(s) 225, 614, 841, 1032
HpyAV CCTTC 7 cut(s) 119, 265, 622, 809, 816, 1148, 1190
HpyCH4III ACNGT 4 cut(s) 169, 833, 1200, 1212
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 5 cut(s) 404, 841, 919, 935, 1123
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 260, 392, 401, 466, 932
HpyF3I CTNAG 3 cut(s) 306, 881, 891
HpySE526I ACGT 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 378
Kpn2I TCCGGA 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 1032
Kzo9I GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 4 cut(s) 77, 667, 899, 910
LweI GCATC 3 cut(s) 922, 999, 1110
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 3 cut(s) 271, 426, 767
MalI GATC 6 cut(s) 291, 464, 480, 583, 906, 1134
MboI GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
MboII GAAGA 2 cut(s) 221, 473
MfeI CAATTG 1 cut(s) 617
MhlI GDGCHC 7 cut(s) 146, 235, 305, 388, 722, 843, 859
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 5 cut(s) 296, 449, 561, 597, 617
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 2 cut(s) 80, 1095
MmeI TCCRAC 1 cut(s) 153
Mox20I TGGCCA 1 cut(s) 623
Mph1103I ATGCAT 1 cut(s) 1125
MroI TCCGGA 1 cut(s) 18
MscI TGGCCA 1 cut(s) 623
MseI TTAA 6 cut(s) 294, 315, 777, 1031, 1097, 1231
MslI CAYNNNNRTG 4 cut(s) 361, 414, 1007, 1128
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 890
MspCI CTTAAG 1 cut(s) 1096
MspI CCGG 4 cut(s) 19, 56, 955, 1027
MspR9I CCNGG 3 cut(s) 346, 861, 956
MunI CAATTG 1 cut(s) 617
MvaI CCWGG 2 cut(s) 346, 861
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 6 cut(s) 251, 260, 392, 401, 466, 932
NciI CCSGG 1 cut(s) 956
NcoI CCATGG 2 cut(s) 685, 850
NdeI CATATG 1 cut(s) 362
NdeII GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
NlaIV GGNNCC 3 cut(s) 343, 848, 953
NsiI ATGCAT 1 cut(s) 1125
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 1152
OliI CACNNNNGTG 1 cut(s) 1007
PfeI GAWTC 3 cut(s) 326, 781, 824
PfoI TCCNGGA 1 cut(s) 859
PinAI ACCGGT 1 cut(s) 1026
PkrI GCNGC 6 cut(s) 64, 67, 682, 797, 889, 925
PleI GAGTC 2 cut(s) 80, 1095
PpsI GAGTC 2 cut(s) 80, 1095
Psp124BI GAGCTC 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 344, 859
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 2 cut(s) 344, 859
PspN4I GGNNCC 3 cut(s) 343, 848, 953
PspPI GGNCC 3 cut(s) 154, 522, 1059
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 5 cut(s) 224, 650, 760, 1055, 1117
RsaNI GTAC 5 cut(s) 223, 649, 759, 1054, 1116
RseI CAYNNNNRTG 4 cut(s) 361, 414, 1007, 1128
SacI GAGCTC 1 cut(s) 146
SaqAI TTAA 6 cut(s) 294, 315, 777, 1031, 1097, 1231
SatI GCNGC 6 cut(s) 63, 66, 681, 796, 888, 924
Sau3AI GATC 6 cut(s) 289, 462, 478, 581, 904, 1132
Sau96I GGNCC 3 cut(s) 154, 522, 1059
SchI GAGTC 2 cut(s) 80, 1095
ScrFI CCNGG 3 cut(s) 346, 861, 956
SduI GDGCHC 7 cut(s) 146, 235, 305, 388, 722, 843, 859
SfaNI GCATC 3 cut(s) 922, 999, 1110
SfcI CTRYAG 1 cut(s) 927
SfuI TTCGAA 1 cut(s) 1152
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 4 cut(s) 361, 414, 1007, 1128
SmlI CTYRAG 2 cut(s) 137, 1096
SmoI CTYRAG 2 cut(s) 137, 1096
Sse9I AATT 5 cut(s) 296, 449, 561, 597, 617
SsiI CCGC 4 cut(s) 62, 370, 436, 795
SspMI CTAG 1 cut(s) 474
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 344, 859, 954
StyI CCWWGG 3 cut(s) 388, 685, 850
TaaI ACNGT 4 cut(s) 169, 833, 1200, 1212
TaiI ACGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 1152
TaqII GACCGA 1 cut(s) 24
TasI AATT 5 cut(s) 296, 449, 561, 597, 617
TatI WGTACW 2 cut(s) 222, 1053
TauI GCSGC 2 cut(s) 65, 798
TfiI GAWTC 3 cut(s) 326, 781, 824
Tru1I TTAA 6 cut(s) 294, 315, 777, 1031, 1097, 1231
Tru9I TTAA 6 cut(s) 294, 315, 777, 1031, 1097, 1231
TscAI CASTG 2 cut(s) 848, 1000
TseI GCWGC 4 cut(s) 65, 680, 887, 923
TspDTI ATGAA 2 cut(s) 349, 609
TspRI CASTG 2 cut(s) 848, 1000
Vha464I CTTAAG 1 cut(s) 1096
VneI GTGCAC 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 449
XceI RCATGY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 613
XspI CTAG 1 cut(s) 474
Zsp2I ATGCAT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.