FvH4_3g20590

lanC-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014003
Physical Location & Seq
Forward (+)
13637341 .. 13639936
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20590.t1

Sequence Viewer

Length: 1212 bp
ATGGCGGACCGATACTTGGAGAACGACATGCCGGATTTCGTTGAAGAGGAGGCACCGGCGGAAGAGGCTGAAGTGGGCTCTTTAGCAAGGCTACTCTCTCTTCCTTATGCAACTCTCTCTGACATGCTCAAAAGCTCGGCTTTGGACCTCAAACAAACGGTGGTCATGCAGACATGGGGGAAGCGTGTGGGAGATTATAGTTTGTATACAGGGGCTCTTGGGACTGCTTGTTTGGCTTTCAAGGCTTACCAAGTCACCAAGAACCTCAGTGATCTTAAATTGTGTTGTGACATTGTTAAAGCCTGTGATATTGCTTCTAGAGATTCTGGGCATGTTTCATTCATATGTGGGCGGGCTGGCGTTTGTGCCTTTGGTGCTGTGGCGGCAAAGCATGCTGGTGATGGAATGCTACTTGACCACTACTTATCACAATTTAAAGAGATCAAGCTCTATAGTGATCTCCCAAATGAGCTATTATATGGGAGAGCTGGGTACCTGTGGGCCTGTTCATTCTTAAACAAGAATATCGGAAATGGAACTGTTTCTACTACTCGCATAAGATCAGTTGTGGATGAAATTATAAAGTCTGGTAGACAATTGGCCAAGAAGGGACGGAGCTCGTTGATGTACGAATGGCATGGGAAGAAATACTGGGGTGCTGCCCATGGTCTTGCCGGAATAATGTATGTTTTGATGACTGTGCAACTGAAACCTGAGGAGGTCGAGGATGTCAAGGGTACTCTACGTTACATGATTAAGAACTGCTTTCCCAGCGGTAACTATCTTTCAAGTGAAGGAAGTGAATCAGACCGTCTTGTGCACTGGTGCCATGGTGCTCCTGGAGTTGCTCTTACACTTGTTAAAGCAGCTGAGGTTTTTGGAGATGAAGAATTTGTGCAGGCTGCTATAGATGCAGGGGAAGTGGTGTGGAGGCGGGGTCTGCTAAAGCGAGTTGGCCTATGTCATGGGATCAGTGGGAACACTTATGTGTTTCTTTCACTCTACCGATTCACGGGTAAGGTGGAATATTTGTACAGGGCCAAAGCATTCGCTTGCTTTTTATATGATAGAGCACCCAGACTCATATCAGAAGGAAGGATGCATGGAGGTGATCGCCCCTATTCCTTATTTGAAGGTGTTGGAGGAATGGCTCATCTCTTTCTGGACATGACTGACCCATCTGAAGCTCGGTTTCCTGGTTATGAACTTTAA

Protein Analysis

404

Amino Acids

44.52

Weight (kDa)

6.56

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 64 - 403 1.8e-97 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52920
fragaria_vesca FvH4_3g20590 FvH4_3g20590
malus_domestica MD03G1223900.v1.1
prunus_persica Prupe.4G185600_v2.0.a1
pyrus_communis pycom03g17230
rosa_chinensis RchiOBHm_Chr5g0034611
rosa_laevigata RLG00000033558
rosa_multiflora Rmu_sc0017377.1_g000004
rosa_roxburghii Rroxscaffold_1G00045710
rosa_rugosa Rorug05G0147200
rosa_samantha Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
Acc65I GGTACC 1 cut(s) 492
AccB1I GGYRCC 3 cut(s) 52, 492, 825
AccI GTMKAC 2 cut(s) 206, 592
AciI CCGC 6 cut(s) 5, 59, 352, 383, 774, 934
AclWI GGATC 1 cut(s) 977
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 1 cut(s) 890
AcuI CTGAAG 2 cut(s) 90, 1203
AfaI GTAC 4 cut(s) 494, 629, 739, 1034
AfiI CCNNNNNNNGG 2 cut(s) 16, 1012
AgsI TTSAA 4 cut(s) 44, 241, 789, 1133
AjnI CCWGG 2 cut(s) 838, 1195
AleI CACNNNNGTG 1 cut(s) 986
AluBI AGCT 7 cut(s) 135, 448, 472, 488, 618, 869, 1187
AluI AGCT 7 cut(s) 135, 448, 472, 488, 618, 869, 1187
Alw21I GWGCWC 4 cut(s) 620, 822, 838, 1075
Alw44I GTGCAC 1 cut(s) 818
AlwI GGATC 1 cut(s) 977
AoxI GGCC 4 cut(s) 501, 600, 955, 1038
ApaLI GTGCAC 1 cut(s) 818
ApeKI GCWGC 3 cut(s) 659, 866, 902
ApoI RAATTY 1 cut(s) 890
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
Asp700I GAANNNNTTC 1 cut(s) 541
Asp718I GGTACC 1 cut(s) 492
AspS9I GGNCC 4 cut(s) 7, 145, 501, 1038
AsuHPI GGTGA 3 cut(s) 247, 410, 1121
AvaII GGWCC 2 cut(s) 7, 145
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 822
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 3 cut(s) 52, 492, 825
BanII GRGCYC 3 cut(s) 80, 217, 620
Bbv12I GWGCWC 4 cut(s) 620, 822, 838, 1075
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 3 cut(s) 646, 878, 889
BccI CCATC 2 cut(s) 395, 1186
BciT130I CCWGG 2 cut(s) 840, 1197
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 451, 906
BisI GCNGC 4 cut(s) 384, 660, 867, 903
BlsI GCNGC 4 cut(s) 385, 661, 868, 904
Bme1390I CCNGG 2 cut(s) 840, 1197
Bme18I GGWCC 2 cut(s) 7, 145
BmgT120I GGNCC 4 cut(s) 7, 145, 501, 1038
BmiI GGNNCC 3 cut(s) 54, 494, 827
BmrFI CCNGG 2 cut(s) 840, 1197
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 2 cut(s) 901, 1089
BmuI ACTGGG 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 861
Bpu10I CCTNAGC 1 cut(s) 870
BsaJI CCNNGG 2 cut(s) 664, 829
BsaXI ACNNNNNCTCC 2 cut(s) 922, 952
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 1012
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 656, 827
Bse21I CCTNAGG 1 cut(s) 714
BseBI CCWGG 2 cut(s) 840, 1197
BseDI CCNNGG 2 cut(s) 664, 829
BseGI GGATG 3 cut(s) 577, 733, 1104
BseLI CCNNNNNNNGG 2 cut(s) 16, 1012
BseMII CTCAG 3 cut(s) 280, 705, 861
BseNI ACTGG 2 cut(s) 656, 827
BseRI GAGGAG 2 cut(s) 62, 731
BseSI GKGCMC 1 cut(s) 822
BseXI GCAGC 3 cut(s) 646, 878, 889
BseYI CCCAGC 2 cut(s) 488, 770
BsgI GTGCAG 1 cut(s) 917
BshFI GGCC 4 cut(s) 503, 602, 957, 1040
BshNI GGYRCC 3 cut(s) 52, 492, 825
BsiHKAI GWGCWC 4 cut(s) 620, 822, 838, 1075
BsiSI CCGG 3 cut(s) 32, 56, 675
BslFI GGGAC 2 cut(s) 235, 624
BslI CCNNNNNNNGG 2 cut(s) 16, 1012
BsmFI GGGAC 2 cut(s) 235, 624
BsmI GAATGC 2 cut(s) 411, 1046
BsnI GGCC 4 cut(s) 503, 602, 957, 1040
Bsp1286I GDGCHC 6 cut(s) 80, 217, 620, 822, 838, 1075
Bsp1407I TGTACA 1 cut(s) 1032
Bsp143I GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
Bsp19I CCATGG 2 cut(s) 664, 829
BspACI CCGC 6 cut(s) 5, 59, 352, 383, 774, 934
BspANI GGCC 4 cut(s) 503, 602, 957, 1040
BspCNI CTCAG 3 cut(s) 279, 706, 862
BspLI GGNNCC 3 cut(s) 54, 494, 827
BspPI GGATC 1 cut(s) 977
BspT107I GGYRCC 3 cut(s) 52, 492, 825
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 1032
BsrI ACTGG 2 cut(s) 656, 827
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 664, 829
BssMI GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
BssNAI GTATAC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 664, 829
Bst1107I GTATAC 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 840, 1197
Bst4CI ACNGT 4 cut(s) 160, 541, 700, 812
Bst6I CTCTTC 3 cut(s) 39, 57, 105
BstAPI GCANNNNNTGC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 1032
BstC8I GCNNGC 5 cut(s) 354, 358, 393, 900, 1054
BstDEI CTNAG 3 cut(s) 266, 714, 870
BstDSI CCRYGG 2 cut(s) 664, 829
BstF5I GGATG 3 cut(s) 577, 733, 1104
BstKTI GATC 6 cut(s) 274, 444, 460, 563, 972, 1114
BstMBI GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
BstMWI GCNNNNNNNGC 9 cut(s) 65, 233, 242, 374, 383, 392, 771, 911, 940
BstNI CCWGG 2 cut(s) 840, 1197
BstNSI RCATGY 4 cut(s) 31, 127, 335, 395
BstSCI CCNGG 2 cut(s) 838, 1195
BstSFI CTRYAG 2 cut(s) 451, 906
BstSLI GKGCMC 1 cut(s) 822
BstV1I GCAGC 3 cut(s) 646, 878, 889
BstZ17I GTATAC 1 cut(s) 207
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 4 cut(s) 503, 602, 957, 1040
BtgI CCRYGG 2 cut(s) 664, 829
BtsCI GGATG 3 cut(s) 577, 733, 1104
BtsIMutI CAGTG 3 cut(s) 274, 820, 979
Cac8I GCNNGC 5 cut(s) 354, 358, 393, 900, 1054
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 4 cut(s) 7, 145, 501, 1038
CpoI CGGWCCG 1 cut(s) 7
Csp6I GTAC 4 cut(s) 493, 628, 738, 1033
CspI CGGWCCG 1 cut(s) 7
CviQI GTAC 4 cut(s) 493, 628, 738, 1033
DdeI CTNAG 3 cut(s) 266, 714, 870
DpnI GATC 6 cut(s) 273, 443, 459, 562, 971, 1113
DpnII GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
DraI TTTAAA 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 3 cut(s) 39, 57, 105
EarI CTCTTC 3 cut(s) 39, 57, 105
EciI GGCGGA 2 cut(s) 20, 74
Ecl136II GAGCTC 1 cut(s) 618
Eco130I CCWWGG 2 cut(s) 664, 829
Eco24I GRGCYC 3 cut(s) 80, 217, 620
Eco47I GGWCC 2 cut(s) 7, 145
Eco53kI GAGCTC 1 cut(s) 618
Eco57I CTGAAG 2 cut(s) 90, 1203
Eco81I CCTNAGG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 838, 1195
EcoT14I CCWWGG 2 cut(s) 664, 829
EcoT22I ATGCAT 1 cut(s) 1104
EcoT38I GRGCYC 3 cut(s) 80, 217, 620
ErhI CCWWGG 2 cut(s) 664, 829
FalI AAGNNNNNCTT 4 cut(s) 124, 156, 749, 781
FaqI GGGAC 2 cut(s) 235, 624
FauI CCCGC 2 cut(s) 345, 927
FauNDI CATATG 1 cut(s) 344
FblI GTMKAC 2 cut(s) 206, 592
Fnu4HI GCNGC 4 cut(s) 384, 660, 867, 903
FokI GGATG 3 cut(s) 584, 740, 1111
FriOI GRGCYC 3 cut(s) 80, 217, 620
Fsp4HI GCNGC 4 cut(s) 384, 660, 867, 903
FspBI CTAG 1 cut(s) 318
GluI GCNGC 4 cut(s) 384, 660, 867, 903
GsaI CCCAGC 2 cut(s) 492, 774
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 4 cut(s) 503, 602, 957, 1040
HapII CCGG 3 cut(s) 32, 56, 675
HinfI GANTC 4 cut(s) 323, 803, 1008, 1080
HpaII CCGG 3 cut(s) 32, 56, 675
HphI GGTGA 3 cut(s) 247, 410, 1121
Hpy166II GTNNAC 3 cut(s) 207, 593, 820
Hpy188I TCNGA 5 cut(s) 121, 530, 808, 1090, 1183
Hpy188III TCNNGA 2 cut(s) 318, 1163
Hpy8I GTNNAC 3 cut(s) 207, 593, 820
HpyAV CCTTC 5 cut(s) 601, 788, 1085, 1089, 1127
HpyCH4III ACNGT 4 cut(s) 160, 541, 700, 812
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 7 cut(s) 110, 169, 703, 820, 898, 914, 1102
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 233, 242, 374, 383, 392, 771, 911, 940
HpyF3I CTNAG 3 cut(s) 266, 714, 870
HpySE526I ACGT 1 cut(s) 745
KpnI GGTACC 1 cut(s) 496
Kzo9I GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
LmnI GCTCC 2 cut(s) 615, 841
Lsp1109I GCAGC 3 cut(s) 646, 878, 889
LweI GCATC 2 cut(s) 901, 1089
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 4 cut(s) 253, 287, 746, 776
MalI GATC 6 cut(s) 273, 443, 459, 562, 971, 1113
MboI GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
MboII GAAGA 5 cut(s) 56, 74, 92, 655, 899
MfeI CAATTG 1 cut(s) 596
MhlI GDGCHC 6 cut(s) 80, 217, 620, 822, 838, 1075
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 5 cut(s) 278, 431, 576, 596, 890
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 1 cut(s) 1074
MmeI TCCRAC 1 cut(s) 1120
Mox20I TGGCCA 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 1104
MroXI GAANNNNTTC 1 cut(s) 541
MscI TGGCCA 1 cut(s) 602
MseI TTAA 7 cut(s) 276, 297, 435, 515, 756, 861, 1210
MslI CAYNNNNRTG 4 cut(s) 343, 396, 986, 1107
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 2 cut(s) 774, 869
MspI CCGG 3 cut(s) 32, 56, 675
MspR9I CCNGG 2 cut(s) 840, 1197
MunI CAATTG 1 cut(s) 596
Mva1269I GAATGC 2 cut(s) 411, 1046
MvaI CCWGG 2 cut(s) 840, 1197
MwoI GCNNNNNNNGC 9 cut(s) 65, 233, 242, 374, 383, 392, 771, 911, 940
NcoI CCATGG 2 cut(s) 664, 829
NdeI CATATG 1 cut(s) 344
NdeII GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
NlaIV GGNNCC 3 cut(s) 54, 494, 827
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 253, 287
NsiI ATGCAT 1 cut(s) 1104
NspI RCATGY 4 cut(s) 31, 127, 335, 395
OliI CACNNNNGTG 1 cut(s) 986
PaeI GCATGC 1 cut(s) 395
PctI GAATGC 2 cut(s) 411, 1046
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 3 cut(s) 323, 803, 1008
PfoI TCCNGGA 1 cut(s) 838
PkrI GCNGC 4 cut(s) 385, 661, 868, 904
PleI GAGTC 1 cut(s) 1074
PpsI GAGTC 1 cut(s) 1074
PsiI TTATAA 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 838, 1195
PspFI CCCAGC 2 cut(s) 488, 770
PspGI CCWGG 2 cut(s) 838, 1195
PspN4I GGNNCC 3 cut(s) 54, 494, 827
PspPI GGNCC 4 cut(s) 7, 145, 501, 1038
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 4 cut(s) 494, 629, 739, 1034
RsaNI GTAC 4 cut(s) 493, 628, 738, 1033
RseI CAYNNNNRTG 4 cut(s) 343, 396, 986, 1107
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SacI GAGCTC 1 cut(s) 620
SaqAI TTAA 7 cut(s) 276, 297, 435, 515, 756, 861, 1210
SatI GCNGC 4 cut(s) 384, 660, 867, 903
Sau3AI GATC 6 cut(s) 271, 441, 457, 560, 969, 1111
Sau96I GGNCC 4 cut(s) 7, 145, 501, 1038
SchI GAGTC 1 cut(s) 1074
ScrFI CCNGG 2 cut(s) 840, 1197
SduI GDGCHC 6 cut(s) 80, 217, 620, 822, 838, 1075
SfaNI GCATC 2 cut(s) 901, 1089
SfcI CTRYAG 2 cut(s) 451, 906
SgrAI CRCCGGYG 1 cut(s) 55
SinI GGWCC 2 cut(s) 7, 145
SmiMI CAYNNNNRTG 4 cut(s) 343, 396, 986, 1107
SphI GCATGC 1 cut(s) 395
Sse9I AATT 5 cut(s) 278, 431, 576, 596, 890
SsiI CCGC 6 cut(s) 5, 59, 352, 383, 774, 934
SspI AATATT 1 cut(s) 1028
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 620
StyD4I CCNGG 2 cut(s) 838, 1195
StyI CCWWGG 2 cut(s) 664, 829
TaaI ACNGT 4 cut(s) 160, 541, 700, 812
TaiI ACGT 1 cut(s) 748
TaqI TCGA 1 cut(s) 723
TaqII GACCGA 1 cut(s) 24
TasI AATT 5 cut(s) 278, 431, 576, 596, 890
TatI WGTACW 1 cut(s) 1032
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 3 cut(s) 323, 803, 1008
Tru1I TTAA 7 cut(s) 276, 297, 435, 515, 756, 861, 1210
Tru9I TTAA 7 cut(s) 276, 297, 435, 515, 756, 861, 1210
TscAI CASTG 3 cut(s) 274, 827, 979
TseFI GTSAC 2 cut(s) 253, 287
TseI GCWGC 3 cut(s) 659, 866, 902
Tsp45I GTSAC 2 cut(s) 253, 287
TspDTI ATGAA 5 cut(s) 327, 331, 498, 588, 900
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 3 cut(s) 274, 827, 979
VneI GTGCAC 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 7, 145
XapI RAATTY 1 cut(s) 890
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 4 cut(s) 31, 127, 335, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 836
XmiI GTMKAC 2 cut(s) 206, 592
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.