Rmu_sc0017377.1_g000004

lanC-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017377.1
OG0014003
Physical Location & Seq
Forward (+)
16529 .. 19032
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017377.1_g000004.1.cds

Sequence Viewer

Length: 1104 bp
atggcggaccgatatttcgcgaacgacatgccggaattcgtagaagaggcgccggcgcaagaggctaaagtgggctctttctcaaagctactgtctcttccttatccaactctctccggtatgctcagaagctccggttgggacctcaaacagacggtggtgatgcagacatggggtgtgagtggcaagcgtgtggaagattatactatgtatacaggggctcttggaactgcttggttggcctttaaggcttaccaagtcaccaacaaccacgctgatcttaaattatgctctgacattgttaaggcctgtgatatagcttctagagattctgggtatgtgtcattcatatgtgggcgggctggcgtttgtgccctcggtgctgtggtggcaaagcatgctggtgatgaaatgctacttggccactacttatcaaaatttaaagaggtggttgatattgtggatgaaattttaaaggatggtagacaattggccaagaagggacggagctcattgatgtacgaatggcatgggaagaaatactggggtgctgcccatggtctggcgggaattatgtatgttttgatgaccgtgcaactgaaacctgaggaggttgaggatgtcaagggtactctacgttacatgattaagaatcgctttcccagcggtaactttctttcaagtgaaggaagtgaatcagaccgtcttgtgcactggtgccatggtgctcctggagttgctcttacacttgttagagcagctgaggttttcggagatgaggaatttgtgcaggcggctatagatgcaggagaagtggtgtggagacggggtctgctaaagcgagttggcctatgtcatggcataagtgggaacacttacgtgtttctttcactctaccgattaacaggtaaggtggaatacttgtacagggccaaagcattcgcttgctttttgtatgacaaagggctaaaactcatatcagagggaaggatgcatggaggtgaccgcccctattccctgtttgagggtgttggaggaatggctcatctctttttggacatgactgaaccatctgaagctcggtttcccggatatgaactgtaa

Protein Analysis

367

Amino Acids

40.66

Weight (kDa)

6.8

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52920
fragaria_vesca FvH4_3g20590 FvH4_3g20590
malus_domestica MD03G1223900.v1.1
prunus_persica Prupe.4G185600_v2.0.a1
pyrus_communis pycom03g17230
rosa_chinensis RchiOBHm_Chr5g0034611
rosa_laevigata RLG00000033558
rosa_multiflora Rmu_sc0017377.1_g000004
rosa_roxburghii Rroxscaffold_1G00045710
rosa_rugosa Rorug05G0147200
rosa_samantha Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 49, 717
AccB7I CCANNNNNTGG 1 cut(s) 562
AccI GTMKAC 2 cut(s) 212, 484
AccII CGCG 1 cut(s) 20
AciI CCGC 6 cut(s) 5, 358, 566, 666, 794, 1006
AcoI YGGCCR 2 cut(s) 421, 492
AcsI RAATTY 4 cut(s) 35, 437, 468, 782
AcuI CTGAAG 1 cut(s) 1095
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 3 cut(s) 521, 631, 926
AfiI CCNNNNNNNGG 2 cut(s) 562, 1024
AflIII ACRYGT 1 cut(s) 879
AgsI TTSAA 1 cut(s) 681
AjnI CCWGG 1 cut(s) 730
AjuI GAANNNNNNNTTGG 4 cut(s) 121, 153, 402, 434
AleI CACNNNNGTG 1 cut(s) 878
AluBI AGCT 6 cut(s) 88, 132, 320, 510, 761, 1079
AluI AGCT 6 cut(s) 88, 132, 320, 510, 761, 1079
Alw21I GWGCWC 3 cut(s) 512, 714, 730
Alw26I GTCTC 2 cut(s) 99, 817
Alw44I GTGCAC 1 cut(s) 710
AoxI GGCC 6 cut(s) 240, 306, 421, 492, 847, 930
ApaLI GTGCAC 1 cut(s) 710
ApeKI GCWGC 2 cut(s) 551, 758
ApoI RAATTY 4 cut(s) 35, 437, 468, 782
ArsI GACNNNNNNTTYG 3 cut(s) 31, 77, 109
AspLEI GCGC 2 cut(s) 52, 58
AspS9I GGNCC 3 cut(s) 7, 142, 930
AsuC2I CCSGG 1 cut(s) 1089
AsuHPI GGTGA 4 cut(s) 172, 253, 416, 1013
AvaII GGWCC 2 cut(s) 7, 142
AxyI CCTNAGG 1 cut(s) 606
BaeGI GKGCMC 2 cut(s) 376, 714
BalI TGGCCA 2 cut(s) 423, 494
BanI GGYRCC 2 cut(s) 49, 717
BanII GRGCYC 3 cut(s) 77, 223, 512
Bbv12I GWGCWC 3 cut(s) 512, 714, 730
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 538, 770
BccI CCATC 2 cut(s) 473, 1078
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 732
BcnI CCSGG 1 cut(s) 1089
BcoDI GTCTC 2 cut(s) 99, 817
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 798
BfoI RGCGCY 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 3 cut(s) 552, 759, 795
BlsI GCNGC 3 cut(s) 553, 760, 796
Bme1390I CCNGG 2 cut(s) 732, 1089
Bme18I GGWCC 2 cut(s) 7, 142
BmgT120I GGNCC 3 cut(s) 7, 142, 930
BmiI GGNNCC 3 cut(s) 51, 143, 719
BmrFI CCNGG 2 cut(s) 732, 1089
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 3 cut(s) 153, 793, 981
BmuI ACTGGG 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 762
BpuMI CCSGG 1 cut(s) 1089
BsaAI YACGTR 1 cut(s) 880
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 376, 556, 721
BsaWI WCCGGW 2 cut(s) 116, 134
BsaXI ACNNNNNCTCC 4 cut(s) 801, 814, 831, 844
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 1024
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 548, 719
Bse21I CCTNAGG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 376, 556, 721
BseGI GGATG 4 cut(s) 469, 484, 625, 996
BseLI CCNNNNNNNGG 2 cut(s) 562, 1024
BseMII CTCAG 3 cut(s) 139, 597, 753
BseNI ACTGG 2 cut(s) 548, 719
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 2 cut(s) 376, 714
BseXI GCAGC 2 cut(s) 538, 770
BseYI CCCAGC 1 cut(s) 662
BsgI GTGCAG 1 cut(s) 809
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 6 cut(s) 242, 308, 423, 494, 849, 932
BshNI GGYRCC 2 cut(s) 49, 717
BsiHKAI GWGCWC 3 cut(s) 512, 714, 730
BsiSI CCGG 5 cut(s) 32, 53, 117, 135, 1089
BslFI GGGAC 2 cut(s) 155, 516
BslI CCNNNNNNNGG 2 cut(s) 562, 1024
BsmAI GTCTC 2 cut(s) 99, 817
BsmBI CGTCTC 1 cut(s) 817
BsmFI GGGAC 2 cut(s) 155, 516
BsmI GAATGC 1 cut(s) 938
BsnI GGCC 6 cut(s) 242, 308, 423, 494, 849, 932
Bsp1286I GDGCHC 6 cut(s) 77, 223, 376, 512, 714, 730
Bsp1407I TGTACA 1 cut(s) 924
Bsp143I GATC 1 cut(s) 277
Bsp19I CCATGG 2 cut(s) 556, 721
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 6 cut(s) 5, 358, 566, 666, 794, 1006
BspANI GGCC 6 cut(s) 242, 308, 423, 494, 849, 932
BspCNI CTCAG 3 cut(s) 138, 598, 754
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 3 cut(s) 51, 143, 719
BspT107I GGYRCC 2 cut(s) 49, 717
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 924
BsrI ACTGG 2 cut(s) 548, 719
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 376, 556, 721
BssMI GATC 1 cut(s) 277
BssNAI GTATAC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 556, 721
Bst1107I GTATAC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 5 cut(s) 93, 157, 592, 704, 1101
Bst6I CTCTTC 2 cut(s) 39, 102
BstACI GRCGYC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 924
BstBAI YACGTR 1 cut(s) 880
BstC8I GCNNGC 7 cut(s) 54, 188, 360, 364, 399, 792, 946
BstDEI CTNAG 3 cut(s) 125, 606, 762
BstDSI CCRYGG 2 cut(s) 556, 721
BstEII GGTNACC 1 cut(s) 1001
BstENI CCTNNNNNAGG 1 cut(s) 1022
BstF5I GGATG 4 cut(s) 469, 484, 625, 996
BstFNI CGCG 1 cut(s) 20
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 58
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 99, 817
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 8 cut(s) 62, 239, 248, 380, 389, 398, 663, 803
BstNI CCWGG 1 cut(s) 732
BstNSI RCATGY 2 cut(s) 31, 401
BstPI GGTNACC 1 cut(s) 1001
BstSCI CCNGG 2 cut(s) 730, 1087
BstSFI CTRYAG 1 cut(s) 798
BstSLI GKGCMC 2 cut(s) 376, 714
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 538, 770
BstZ17I GTATAC 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 6 cut(s) 242, 308, 423, 494, 849, 932
BtgI CCRYGG 2 cut(s) 556, 721
BtsCI GGATG 4 cut(s) 469, 484, 625, 996
BtsIMutI CAGTG 1 cut(s) 712
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 7 cut(s) 54, 188, 360, 364, 399, 792, 946
CfoI GCGC 2 cut(s) 52, 58
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 7, 142, 930
CpoI CGGWCCG 1 cut(s) 7
Csp6I GTAC 3 cut(s) 520, 630, 925
CspI CGGWCCG 1 cut(s) 7
CviQI GTAC 3 cut(s) 520, 630, 925
DdeI CTNAG 3 cut(s) 125, 606, 762
DinI GGCGCC 1 cut(s) 51
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraI TTTAAA 2 cut(s) 442, 474
EaeI YGGCCR 2 cut(s) 421, 492
Eam1104I CTCTTC 2 cut(s) 39, 102
EarI CTCTTC 2 cut(s) 39, 102
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 556, 721
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 3 cut(s) 77, 223, 512
Eco47I GGWCC 2 cut(s) 7, 142
Eco53kI GAGCTC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 1095
Eco81I CCTNAGG 1 cut(s) 606
Eco91I GGTNACC 1 cut(s) 1001
EcoICRI GAGCTC 1 cut(s) 510
EcoNI CCTNNNNNAGG 1 cut(s) 1022
EcoO109I RGGNCCY 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 730
EcoT14I CCWWGG 2 cut(s) 556, 721
EcoT22I ATGCAT 1 cut(s) 996
EcoT38I GRGCYC 3 cut(s) 77, 223, 512
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 556, 721
Esp3I CGTCTC 1 cut(s) 817
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 2 cut(s) 155, 516
FauI CCCGC 2 cut(s) 351, 559
FauNDI CATATG 1 cut(s) 350
FblI GTMKAC 2 cut(s) 212, 484
Fnu4HI GCNGC 3 cut(s) 552, 759, 795
FokI GGATG 4 cut(s) 476, 491, 632, 1003
FriOI GRGCYC 3 cut(s) 77, 223, 512
Fsp4HI GCNGC 3 cut(s) 552, 759, 795
FspBI CTAG 1 cut(s) 324
GlaI GCGC 2 cut(s) 51, 57
GluI GCNGC 3 cut(s) 552, 759, 795
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 6 cut(s) 242, 308, 423, 494, 849, 932
HapII CCGG 5 cut(s) 32, 53, 117, 135, 1089
HhaI GCGC 2 cut(s) 52, 58
Hin1I GRCGYC 1 cut(s) 50
Hin6I GCGC 2 cut(s) 50, 56
HinP1I GCGC 2 cut(s) 50, 56
HinfI GANTC 3 cut(s) 329, 652, 695
HpaII CCGG 5 cut(s) 32, 53, 117, 135, 1089
HphI GGTGA 4 cut(s) 172, 253, 416, 1013
Hpy166II GTNNAC 3 cut(s) 213, 485, 712
Hpy188I TCNGA 6 cut(s) 128, 295, 700, 773, 982, 1075
Hpy188III TCNNGA 2 cut(s) 19, 324
Hpy8I GTNNAC 3 cut(s) 213, 485, 712
HpyAV CCTTC 3 cut(s) 493, 680, 981
HpyCH4III ACNGT 5 cut(s) 93, 157, 592, 704, 1101
HpyCH4IV ACGT 2 cut(s) 637, 879
HpyCH4V TGCA 6 cut(s) 166, 595, 712, 790, 806, 994
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 239, 248, 380, 389, 398, 663, 803
HpyF3I CTNAG 3 cut(s) 125, 606, 762
HpySE526I ACGT 2 cut(s) 637, 879
Hsp92I GRCGYC 1 cut(s) 50
HspAI GCGC 2 cut(s) 50, 56
KasI GGCGCC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 3 cut(s) 137, 507, 733
Lsp1109I GCAGC 2 cut(s) 538, 770
LweI GCATC 3 cut(s) 153, 793, 981
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 637, 879
MaeIII GTNAC 4 cut(s) 259, 638, 668, 1001
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 4 cut(s) 56, 89, 209, 547
MfeI CAATTG 1 cut(s) 488
MhlI GDGCHC 6 cut(s) 77, 223, 376, 512, 714, 730
MlsI TGGCCA 2 cut(s) 423, 494
MluCI AATT 7 cut(s) 35, 284, 437, 468, 488, 570, 782
MluNI TGGCCA 2 cut(s) 423, 494
Mly113I GGCGCC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 131, 1012
Mox20I TGGCCA 2 cut(s) 423, 494
Mph1103I ATGCAT 1 cut(s) 996
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 2 cut(s) 423, 494
MseI TTAA 7 cut(s) 246, 282, 303, 441, 473, 648, 902
MslI CAYNNNNRTG 4 cut(s) 349, 402, 878, 999
Msp20I TGGCCA 2 cut(s) 423, 494
MspA1I CMGCKG 2 cut(s) 666, 761
MspI CCGG 5 cut(s) 32, 53, 117, 135, 1089
MspR9I CCNGG 2 cut(s) 732, 1089
MunI CAATTG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 938
MvaI CCWGG 1 cut(s) 732
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 8 cut(s) 62, 239, 248, 380, 389, 398, 663, 803
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 50
NciI CCSGG 1 cut(s) 1089
NcoI CCATGG 2 cut(s) 556, 721
NdeI CATATG 1 cut(s) 350
NdeII GATC 1 cut(s) 277
NgoMIV GCCGGC 1 cut(s) 52
NlaIV GGNNCC 3 cut(s) 51, 143, 719
NmuCI GTSAC 2 cut(s) 259, 1001
NruI TCGCGA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 996
NspI RCATGY 2 cut(s) 31, 401
OliI CACNNNNGTG 1 cut(s) 878
PaeI GCATGC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 938
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 329, 652, 695
PflFI GACNNNGTC 1 cut(s) 828
PflMI CCANNNNNTGG 1 cut(s) 562
PfoI TCCNGGA 2 cut(s) 730, 1087
PkrI GCNGC 3 cut(s) 553, 760, 796
PluTI GGCGCC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 880
PpuMI RGGWCCY 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 730
PspEI GGTNACC 1 cut(s) 1001
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 3 cut(s) 51, 143, 719
PspPI GGNCC 3 cut(s) 7, 142, 930
PspPPI RGGWCCY 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 828
PvuII CAGCTG 1 cut(s) 761
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 3 cut(s) 521, 631, 926
RsaNI GTAC 3 cut(s) 520, 630, 925
RseI CAYNNNNRTG 4 cut(s) 349, 402, 878, 999
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 7 cut(s) 246, 282, 303, 441, 473, 648, 902
SatI GCNGC 3 cut(s) 552, 759, 795
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 3 cut(s) 7, 142, 930
ScrFI CCNGG 2 cut(s) 732, 1089
SduI GDGCHC 6 cut(s) 77, 223, 376, 512, 714, 730
SfaNI GCATC 3 cut(s) 153, 793, 981
SfcI CTRYAG 1 cut(s) 798
SfoI GGCGCC 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 2 cut(s) 7, 142
SmiMI CAYNNNNRTG 4 cut(s) 349, 402, 878, 999
SphI GCATGC 1 cut(s) 401
Sse9I AATT 7 cut(s) 35, 284, 437, 468, 488, 570, 782
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 6 cut(s) 5, 358, 566, 666, 794, 1006
SspDI GGCGCC 1 cut(s) 49
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 512
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 730, 1087
StyI CCWWGG 2 cut(s) 556, 721
TaaI ACNGT 5 cut(s) 93, 157, 592, 704, 1101
TaiI ACGT 2 cut(s) 640, 882
TaqII GACCGA 1 cut(s) 24
TasI AATT 7 cut(s) 35, 284, 437, 468, 488, 570, 782
TatI WGTACW 1 cut(s) 924
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 3 cut(s) 329, 652, 695
Tru1I TTAA 7 cut(s) 246, 282, 303, 441, 473, 648, 902
Tru9I TTAA 7 cut(s) 246, 282, 303, 441, 473, 648, 902
TscAI CASTG 1 cut(s) 719
TseFI GTSAC 2 cut(s) 259, 1001
TseI GCWGC 2 cut(s) 551, 758
Tsp45I GTSAC 2 cut(s) 259, 1001
TspDTI ATGAA 3 cut(s) 337, 423, 480
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 1 cut(s) 719
Tth111I GACNNNGTC 1 cut(s) 828
Van91I CCANNNNNTGG 1 cut(s) 562
VneI GTGCAC 1 cut(s) 710
VpaK11BI GGWCC 2 cut(s) 7, 142
XagI CCTNNNNNAGG 1 cut(s) 1022
XapI RAATTY 4 cut(s) 35, 437, 468, 782
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 2 cut(s) 31, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XmiI GTMKAC 2 cut(s) 212, 484
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.