Rw5G021820

lanC-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014003
Physical Location & Seq
Forward (+)
29712288 .. 29714652
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021820.1

Sequence Viewer

Length: 1023 bp
ATGGCGGACCGATATTTCGCGAACGACATGCCGGAATTCGTAGAAGAGGCGCCGGCGGAAGAGGCTAAAGTGGGCTCTTTCTCAAAGCTACTGTCTCTTCCTTATCCAACTCTCTCCGGTATGCTCAGAAGCGCCGGTTGGGACCTCAAACAGACGGTGGTGATGCAGACATGGGGTGTGAGTGGCAAGCGTGTGGAAGATTATACCATGTATACAGGGGCTCTTGGAACTGCTTGGTTGGCCTTTAAGGCTTACCAAGTCACCAACAACCACGCTGATCTTAAATTATGCTCTGACATTGTTAAGGCCTGTGATATAGCTTCTAGAGATTCTGGGTATGTGTCATTCATATGTGGGCGGGCTGGCGTTTGTGCCCTCGGTGCTGTGGTGGCAAAGCATGCTGGTGATGAAATGCTACTTGGCCACTACTTATCAAAATTTAAAGAGATCAAGCTCTCTAGCAATCTTCCAAATGAGTTATTATACGGCAGAGCTGGGTATTTATGGGCCTGTTCATTCTTAAACAAGAATGTTGGAAATGGAACAATTTCTACTACTCGCATAAGATCAGTTGTGGATGAAATTATAAAGGATGGTAGACAATTGGCCAAGAAGGGACGGAGCTCATTGATGTACGAATGGCATGGGAAGAAATACTGGGGTGCTGCCCATGGTCTGGCGGGAATTATGTATGTTTTGATGACCGTGCAACTGAAACCTGAGGAGGTTGAGGATAATCGCTTTCCCAGCGGTAATTTTCTTTCAAGTGAAGGAAGTGAATCAGACCGTCTTGTGCACTGGTGCCATGGTGCTCCTGGAGTTTTCGGAGATGAGGAATTTGTGCAGGCAGCAATTGATGCAGGAGAGGTGGTGTGGAGACGGGGTCTGCTAAAGCGAGTTGGCCTATGTCATGGCATAAGTGGGAACACTTACGTGTTTCTTTCACTCTACCGATTAACAGGTAAGGTGGAATACTTGTACAGGGCCAAAGCATTCGCTTGTTTTTGTATGACAAAGGGCTAA

Protein Analysis

340

Amino Acids

37.56

Weight (kDa)

8.46

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 65 - 339 5.1e-69 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52920
fragaria_vesca FvH4_3g20590 FvH4_3g20590
malus_domestica MD03G1223900.v1.1
prunus_persica Prupe.4G185600_v2.0.a1
pyrus_communis pycom03g17230
rosa_chinensis RchiOBHm_Chr5g0034611
rosa_laevigata RLG00000033558
rosa_multiflora Rmu_sc0017377.1_g000004
rosa_roxburghii Rroxscaffold_1G00045710
rosa_rugosa Rorug05G0147200
rosa_samantha Rh5AG239100 Rh5BG239800 Rh5CG270200 Rh5DG248000
rosa_wichuraiana Rw5G021820 Rw5G021910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AccB1I GGYRCC 2 cut(s) 49, 801
AccB7I CCANNNNNTGG 1 cut(s) 676
AccI GTMKAC 2 cut(s) 212, 598
AccII CGCG 1 cut(s) 20
AciI CCGC 5 cut(s) 5, 56, 358, 680, 750
AcoI YGGCCR 2 cut(s) 421, 606
AcsI RAATTY 3 cut(s) 35, 437, 836
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 2 cut(s) 635, 980
AfiI CCNNNNNNNGG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 1 cut(s) 765
AjnI CCWGG 1 cut(s) 814
AjuI GAANNNNNNNTTGG 4 cut(s) 121, 153, 402, 434
AleI CACNNNNGTG 1 cut(s) 932
AluBI AGCT 5 cut(s) 88, 320, 454, 494, 624
AluI AGCT 5 cut(s) 88, 320, 454, 494, 624
Alw21I GWGCWC 3 cut(s) 626, 798, 814
Alw26I GTCTC 2 cut(s) 99, 871
Alw44I GTGCAC 1 cut(s) 794
AoxI GGCC 7 cut(s) 240, 306, 421, 507, 606, 901, 984
ApaLI GTGCAC 1 cut(s) 794
ApeKI GCWGC 2 cut(s) 665, 848
ApoI RAATTY 3 cut(s) 35, 437, 836
ArsI GACNNNNNNTTYG 3 cut(s) 31, 77, 109
Asp700I GAANNNNTTC 1 cut(s) 547
AspLEI GCGC 2 cut(s) 52, 134
AspS9I GGNCC 4 cut(s) 7, 142, 507, 984
AsuHPI GGTGA 3 cut(s) 172, 253, 416
AvaII GGWCC 2 cut(s) 7, 142
AxyI CCTNAGG 1 cut(s) 720
BaeGI GKGCMC 2 cut(s) 376, 798
BalI TGGCCA 2 cut(s) 423, 608
BanI GGYRCC 2 cut(s) 49, 801
BanII GRGCYC 3 cut(s) 77, 223, 626
Bbv12I GWGCWC 3 cut(s) 626, 798, 814
BbvI GCAGC 2 cut(s) 652, 860
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 502
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 816
BcoDI GTCTC 2 cut(s) 99, 871
BfaI CTAG 2 cut(s) 324, 459
BfoI RGCGCY 2 cut(s) 53, 135
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 2 cut(s) 666, 849
BlsI GCNGC 2 cut(s) 667, 850
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 2 cut(s) 7, 142
BmgT120I GGNCC 4 cut(s) 7, 142, 507, 984
BmiI GGNNCC 3 cut(s) 51, 143, 803
BmrFI CCNGG 1 cut(s) 816
BmrI ACTGGG 1 cut(s) 667
BmsI GCATC 2 cut(s) 153, 847
BmuI ACTGGG 1 cut(s) 667
BpmI CTGGAG 1 cut(s) 837
BsaAI YACGTR 1 cut(s) 934
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 376, 670, 805
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 4 cut(s) 855, 868, 885, 898
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse118I RCCGGY 2 cut(s) 52, 134
Bse1I ACTGG 2 cut(s) 662, 803
Bse21I CCTNAGG 1 cut(s) 720
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 3 cut(s) 376, 670, 805
BseGI GGATG 2 cut(s) 583, 598
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMII CTCAG 2 cut(s) 139, 711
BseNI ACTGG 2 cut(s) 662, 803
BseRI GAGGAG 1 cut(s) 737
BseSI GKGCMC 2 cut(s) 376, 798
BseXI GCAGC 2 cut(s) 652, 860
BseYI CCCAGC 2 cut(s) 494, 746
BsgI GTGCAG 1 cut(s) 863
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 7 cut(s) 242, 308, 423, 509, 608, 903, 986
BshNI GGYRCC 2 cut(s) 49, 801
BsiHKAI GWGCWC 3 cut(s) 626, 798, 814
BsiSI CCGG 4 cut(s) 32, 53, 117, 135
BslFI GGGAC 2 cut(s) 155, 630
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 2 cut(s) 99, 871
BsmBI CGTCTC 1 cut(s) 871
BsmFI GGGAC 2 cut(s) 155, 630
BsmI GAATGC 1 cut(s) 992
BsnI GGCC 7 cut(s) 242, 308, 423, 509, 608, 903, 986
Bsp1286I GDGCHC 6 cut(s) 77, 223, 376, 626, 798, 814
Bsp1407I TGTACA 1 cut(s) 978
Bsp143I GATC 3 cut(s) 277, 447, 566
Bsp19I CCATGG 2 cut(s) 670, 805
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 5 cut(s) 5, 56, 358, 680, 750
BspANI GGCC 7 cut(s) 242, 308, 423, 509, 608, 903, 986
BspCNI CTCAG 2 cut(s) 138, 712
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 3 cut(s) 51, 143, 803
BspT107I GGYRCC 2 cut(s) 49, 801
BsrFI RCCGGY 2 cut(s) 52, 134
BsrGI TGTACA 1 cut(s) 978
BsrI ACTGG 2 cut(s) 662, 803
BssAI RCCGGY 2 cut(s) 52, 134
BssECI CCNNGG 3 cut(s) 376, 670, 805
BssMI GATC 3 cut(s) 277, 447, 566
BssNAI GTATAC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 670, 805
Bst1107I GTATAC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 4 cut(s) 93, 157, 706, 788
Bst6I CTCTTC 3 cut(s) 39, 54, 102
BstACI GRCGYC 1 cut(s) 50
BstAPI GCANNNNNTGC 2 cut(s) 398, 857
BstAUI TGTACA 1 cut(s) 978
BstBAI YACGTR 1 cut(s) 934
BstC8I GCNNGC 6 cut(s) 54, 188, 360, 364, 399, 846
BstDEI CTNAG 2 cut(s) 125, 720
BstDSI CCRYGG 2 cut(s) 670, 805
BstF5I GGATG 2 cut(s) 583, 598
BstFNI CGCG 1 cut(s) 20
BstH2I RGCGCY 2 cut(s) 53, 135
BstHHI GCGC 2 cut(s) 52, 134
BstKTI GATC 3 cut(s) 280, 450, 569
BstMAI GTCTC 2 cut(s) 99, 871
BstMBI GATC 3 cut(s) 277, 447, 566
BstMWI GCNNNNNNNGC 8 cut(s) 62, 239, 248, 380, 389, 398, 747, 857
BstNI CCWGG 1 cut(s) 816
BstNSI RCATGY 2 cut(s) 31, 401
BstSCI CCNGG 1 cut(s) 814
BstSLI GKGCMC 2 cut(s) 376, 798
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 652, 860
BstZ17I GTATAC 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 720
BsuRI GGCC 7 cut(s) 242, 308, 423, 509, 608, 903, 986
BtgI CCRYGG 2 cut(s) 670, 805
BtsCI GGATG 2 cut(s) 583, 598
BtsIMutI CAGTG 1 cut(s) 796
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 6 cut(s) 54, 188, 360, 364, 399, 846
CfoI GCGC 2 cut(s) 52, 134
Cfr10I RCCGGY 2 cut(s) 52, 134
Cfr13I GGNCC 4 cut(s) 7, 142, 507, 984
CpoI CGGWCCG 1 cut(s) 7
Csp6I GTAC 2 cut(s) 634, 979
CspI CGGWCCG 1 cut(s) 7
CviAII CATG 8 cut(s) 28, 171, 208, 398, 644, 671, 806, 911
CviQI GTAC 2 cut(s) 634, 979
DdeI CTNAG 2 cut(s) 125, 720
DinI GGCGCC 1 cut(s) 51
DpnI GATC 3 cut(s) 279, 449, 568
DpnII GATC 3 cut(s) 277, 447, 566
DraI TTTAAA 1 cut(s) 442
EaeI YGGCCR 2 cut(s) 421, 606
Eam1104I CTCTTC 3 cut(s) 39, 54, 102
EarI CTCTTC 3 cut(s) 39, 54, 102
EciI GGCGGA 2 cut(s) 20, 71
Ecl136II GAGCTC 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 670, 805
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 3 cut(s) 77, 223, 626
Eco47I GGWCC 2 cut(s) 7, 142
Eco53kI GAGCTC 1 cut(s) 624
Eco81I CCTNAGG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 670, 805
EcoT38I GRGCYC 3 cut(s) 77, 223, 626
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 670, 805
Esp3I CGTCTC 1 cut(s) 871
FaeI CATG 8 cut(s) 31, 174, 211, 401, 647, 674, 809, 914
FaqI GGGAC 2 cut(s) 155, 630
FatI CATG 8 cut(s) 27, 170, 207, 397, 643, 670, 805, 910
FauI CCCGC 2 cut(s) 351, 673
FauNDI CATATG 1 cut(s) 350
FblI GTMKAC 2 cut(s) 212, 598
Fnu4HI GCNGC 2 cut(s) 666, 849
FokI GGATG 2 cut(s) 590, 605
FriOI GRGCYC 3 cut(s) 77, 223, 626
Fsp4HI GCNGC 2 cut(s) 666, 849
FspBI CTAG 2 cut(s) 324, 459
GlaI GCGC 2 cut(s) 51, 133
GluI GCNGC 2 cut(s) 666, 849
GsaI CCCAGC 2 cut(s) 498, 750
GsuI CTGGAG 1 cut(s) 837
HaeII RGCGCY 2 cut(s) 53, 135
HaeIII GGCC 7 cut(s) 242, 308, 423, 509, 608, 903, 986
HapII CCGG 4 cut(s) 32, 53, 117, 135
HhaI GCGC 2 cut(s) 52, 134
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 8 cut(s) 31, 174, 211, 401, 647, 674, 809, 914
Hin6I GCGC 2 cut(s) 50, 132
HinP1I GCGC 2 cut(s) 50, 132
HinfI GANTC 2 cut(s) 329, 779
HpaII CCGG 4 cut(s) 32, 53, 117, 135
HphI GGTGA 3 cut(s) 172, 253, 416
Hpy166II GTNNAC 3 cut(s) 213, 599, 796
Hpy188I TCNGA 4 cut(s) 128, 295, 784, 827
Hpy188III TCNNGA 2 cut(s) 19, 324
Hpy8I GTNNAC 3 cut(s) 213, 599, 796
HpyAV CCTTC 2 cut(s) 607, 764
HpyCH4III ACNGT 4 cut(s) 93, 157, 706, 788
HpyCH4IV ACGT 1 cut(s) 933
HpyCH4V TGCA 5 cut(s) 166, 709, 796, 844, 860
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 239, 248, 380, 389, 398, 747, 857
HpyF3I CTNAG 2 cut(s) 125, 720
HpySE526I ACGT 1 cut(s) 933
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 8 cut(s) 31, 174, 211, 401, 647, 674, 809, 914
HspAI GCGC 2 cut(s) 50, 132
KasI GGCGCC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 3 cut(s) 277, 447, 566
LmnI GCTCC 2 cut(s) 621, 817
Lsp1109I GCAGC 2 cut(s) 652, 860
LweI GCATC 2 cut(s) 153, 847
MaeI CTAG 2 cut(s) 324, 459
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 279, 449, 568
MboI GATC 3 cut(s) 277, 447, 566
MboII GAAGA 6 cut(s) 56, 71, 89, 209, 458, 661
MfeI CAATTG 2 cut(s) 602, 852
MhlI GDGCHC 6 cut(s) 77, 223, 376, 626, 798, 814
MlsI TGGCCA 2 cut(s) 423, 608
MluNI TGGCCA 2 cut(s) 423, 608
Mly113I GGCGCC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 131, 514
MnlI CCTC 9 cut(s) 40, 55, 155, 386, 715, 718, 724, 826, 859
Mox20I TGGCCA 2 cut(s) 423, 608
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 547
MscI TGGCCA 2 cut(s) 423, 608
MseI TTAA 6 cut(s) 246, 282, 303, 441, 521, 956
MslI CAYNNNNRTG 3 cut(s) 349, 402, 932
Msp20I TGGCCA 2 cut(s) 423, 608
MspA1I CMGCKG 1 cut(s) 750
MspI CCGG 4 cut(s) 32, 53, 117, 135
MspR9I CCNGG 1 cut(s) 816
MunI CAATTG 2 cut(s) 602, 852
Mva1269I GAATGC 1 cut(s) 992
MvaI CCWGG 1 cut(s) 816
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 8 cut(s) 62, 239, 248, 380, 389, 398, 747, 857
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 50
NcoI CCATGG 2 cut(s) 670, 805
NdeI CATATG 1 cut(s) 350
NdeII GATC 3 cut(s) 277, 447, 566
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 8 cut(s) 31, 174, 211, 401, 647, 674, 809, 914
NlaIV GGNNCC 3 cut(s) 51, 143, 803
NmuCI GTSAC 1 cut(s) 259
NruI TCGCGA 1 cut(s) 20
NspI RCATGY 2 cut(s) 31, 401
OliI CACNNNNGTG 1 cut(s) 932
PaeI GCATGC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 992
PdiI GCCGGC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 2 cut(s) 329, 779
PflFI GACNNNGTC 1 cut(s) 882
PflMI CCANNNNNTGG 1 cut(s) 676
PfoI TCCNGGA 1 cut(s) 814
PkrI GCNGC 2 cut(s) 667, 850
PluTI GGCGCC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 934
PpuMI RGGWCCY 1 cut(s) 142
PsiI TTATAA 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 626
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 814
PspFI CCCAGC 2 cut(s) 494, 746
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 3 cut(s) 51, 143, 803
PspPI GGNCC 4 cut(s) 7, 142, 507, 984
PspPPI RGGWCCY 1 cut(s) 142
PsrI GAACNNNNNNTAC 2 cut(s) 535, 567
PsyI GACNNNGTC 1 cut(s) 882
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 2 cut(s) 635, 980
RsaNI GTAC 2 cut(s) 634, 979
RseI CAYNNNNRTG 3 cut(s) 349, 402, 932
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SacI GAGCTC 1 cut(s) 626
SaqAI TTAA 6 cut(s) 246, 282, 303, 441, 521, 956
SatI GCNGC 2 cut(s) 666, 849
Sau3AI GATC 3 cut(s) 277, 447, 566
Sau96I GGNCC 4 cut(s) 7, 142, 507, 984
ScrFI CCNGG 1 cut(s) 816
SduI GDGCHC 6 cut(s) 77, 223, 376, 626, 798, 814
SfaNI GCATC 2 cut(s) 153, 847
SfoI GGCGCC 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 2 cut(s) 7, 142
SmiMI CAYNNNNRTG 3 cut(s) 349, 402, 932
SphI GCATGC 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 5 cut(s) 5, 56, 358, 680, 750
SspDI GGCGCC 1 cut(s) 49
SspMI CTAG 2 cut(s) 324, 459
SstI GAGCTC 1 cut(s) 626
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 2 cut(s) 670, 805
TaaI ACNGT 4 cut(s) 93, 157, 706, 788
TaiI ACGT 1 cut(s) 936
TaqII GACCGA 1 cut(s) 24
TatI WGTACW 1 cut(s) 978
TfiI GAWTC 2 cut(s) 329, 779
Tru1I TTAA 6 cut(s) 246, 282, 303, 441, 521, 956
Tru9I TTAA 6 cut(s) 246, 282, 303, 441, 521, 956
TscAI CASTG 1 cut(s) 803
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 665, 848
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 4 cut(s) 337, 423, 504, 594
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 1 cut(s) 803
Tth111I GACNNNGTC 1 cut(s) 882
Van91I CCANNNNNTGG 1 cut(s) 676
VneI GTGCAC 1 cut(s) 794
VpaK11BI GGWCC 2 cut(s) 7, 142
XapI RAATTY 3 cut(s) 35, 437, 836
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 2 cut(s) 31, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XmiI GTMKAC 2 cut(s) 212, 598
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 2 cut(s) 324, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.