Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Forward (+)

19711179 .. 19713308

Gene Structure 2130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGGAGGAAGCGGAAGCACAGTGAGACGGAAGCTCCGGCGCCGGTGAAAAAGAGCGATGAGCCTGCTCCGGATAGACCCAAAAGGACTCTATTGGGATGGAAAGATAAGAGTGAAGGTGAAGCTGAGAAAGCTAAAGCTTTGACTTCATCTGGATTCAAGAACAAAGAGAAGGTTTTGGTGACTTGTTCTCGTCGTATCAGTTTCAGGTATCGGAGTTTGATGTTGAACATTGTTTCACTTCTACCACACTGTAAGAAAGACAGTAAAGTTGAAGCAAAGAGTAGCAAAGGCGCGACTTTGAATGAGCTCATTGAGCTTAAGAATTCTAATTCCTGCTTGTTCTTCGAGTGTAGGAAACATAAAGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATCTGTGAAGTTTTTGGTTAAAGCTGTGCACGCAATGGAAGAGATGAAACTCACTGGAAATCATCTCAAAGGGTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAAGATGCGCACTGGAAACTCTTGAAGGAGATGCTTACTCAGGTCTTCGGAATTCCTAAGGAACACAGGAAATCTAAGCCTTACCATGACCATGTATTTGTCTTTTCAATTGTTGATGAGCATATATGGTTCCGAAATTACCAGATTTCGGTTCCTCACAATGAGTCAGATAAAATTGCAAAAGGTGGCCTGGATAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTCGCGGGCAGCTTTGGAGGTCCTACTCTTTATGAGAACCCGTTATACGTATCTCCAAACCAGATTCGAGCATTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAGACGAGGAAAAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

320

Amino Acids

36.7

Weight (kDa)

9.69

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	64 - 253	3.4e-43	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	2 cut(s)	296, 767
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	2 cut(s)	13, 767
AcsI	RAATTY	3 cut(s)	325, 564, 860
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	661, 724
AflII	CTTAAG	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	6 cut(s)	160, 229, 275, 304, 538, 621
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	702
Alw21I	GWGCWC	3 cut(s)	312, 435, 909
Alw26I	GTCTC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	431
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	700
ApaLI	GTGCAC	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	771
ApoI	RAATTY	3 cut(s)	325, 564, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AspLEI	GCGC	3 cut(s)	43, 296, 523
AspS9I	GGNCC	3 cut(s)	401, 731, 782
AsuHPI	GGTGA	3 cut(s)	58, 131, 193
AvaII	GGWCC	3 cut(s)	401, 731, 782
AxyI	CCTNAGG	1 cut(s)	570
BaeGI	GKGCMC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	312, 909
BbsI	GAAGAC	2 cut(s)	550, 890
Bbv12I	GWGCWC	3 cut(s)	312, 435, 909
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	3 cut(s)	93, 376, 412
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	44
BfrI	CTTAAG	1 cut(s)	320
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	772
BlsI	GCNGC	1 cut(s)	773
Bme1390I	CCNGG	1 cut(s)	704
Bme18I	GGWCC	3 cut(s)	401, 731, 782
BmgBI	CACGTC	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	401, 731, 782
BmiI	GGNNCC	4 cut(s)	42, 644, 666, 924
BmrFI	CCNGG	1 cut(s)	704
BmsI	GCATC	3 cut(s)	508, 534, 888
BpiI	GAAGAC	2 cut(s)	550, 890
BsaAI	YACGTR	1 cut(s)	811
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	661, 724
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	463, 530
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	3 cut(s)	104, 387, 500
BseLI	CCNNNNNNNGG	2 cut(s)	661, 724
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	117, 566
BseNI	ACTGG	2 cut(s)	463, 530
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	783
BseYI	CCCAGC	1 cut(s)	854
Bsh1236I	CGCG	2 cut(s)	296, 767
BshFI	GGCC	1 cut(s)	702
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	3 cut(s)	312, 435, 909
BsiSI	CCGG	3 cut(s)	38, 44, 71
BslI	CCNNNNNNNGG	2 cut(s)	661, 724
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	702
Bsp1286I	GDGCHC	3 cut(s)	312, 435, 909
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	367, 873
BspACI	CCGC	2 cut(s)	13, 767
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	2 cut(s)	118, 565
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	2 cut(s)	296, 767
BspLI	GGNNCC	4 cut(s)	42, 644, 666, 924
BspT107I	GGYRCC	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	463, 530
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	2 cut(s)	367, 873
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	3 cut(s)	23, 254, 266
Bst6I	CTCTTC	2 cut(s)	438, 836
BstACI	GRCGYC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	811
BstC8I	GCNNGC	3 cut(s)	66, 435, 769
BstDEI	CTNAG	5 cut(s)	126, 552, 570, 588, 867
BstENI	CCTNNNNNAGG	1 cut(s)	722
BstF5I	GGATG	3 cut(s)	104, 387, 500
BstFNI	CGCG	2 cut(s)	296, 767
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	43, 296, 523
BstKTI	GATC	2 cut(s)	370, 876
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	367, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 316, 434
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	435
BstSNI	TACGTA	1 cut(s)	811
BstUI	CGCG	2 cut(s)	296, 767
BstV1I	GCAGC	1 cut(s)	783
BstV2I	GAAGAC	2 cut(s)	550, 890
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	3 cut(s)	104, 387, 500
BtsIMutI	CAGTG	4 cut(s)	28, 250, 456, 523
Cac8I	GCNNGC	3 cut(s)	66, 435, 769
CfoI	GCGC	3 cut(s)	43, 296, 523
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	401, 731, 782
CviAII	CATG	4 cut(s)	376, 599, 605, 902
DdeI	CTNAG	5 cut(s)	126, 552, 570, 588, 867
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	2 cut(s)	369, 875
DpnII	GATC	2 cut(s)	367, 873
Eam1104I	CTCTTC	2 cut(s)	438, 836
EarI	CTCTTC	2 cut(s)	438, 836
Ecl136II	GAGCTC	2 cut(s)	310, 907
Eco105I	TACGTA	1 cut(s)	811
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	2 cut(s)	312, 909
Eco47I	GGWCC	3 cut(s)	401, 731, 782
Eco53kI	GAGCTC	2 cut(s)	310, 907
Eco81I	CCTNAGG	1 cut(s)	570
EcoICRI	GAGCTC	2 cut(s)	310, 907
EcoNI	CCTNNNNNAGG	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	782
EcoRI	GAATTC	2 cut(s)	325, 564
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	1 cut(s)	734
EcoT22I	ATGCAT	1 cut(s)	903
EcoT38I	GRGCYC	2 cut(s)	312, 909
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	734
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	4 cut(s)	379, 602, 608, 905
FatI	CATG	4 cut(s)	375, 598, 604, 901
FauI	CCCGC	1 cut(s)	760
Fnu4HI	GCNGC	1 cut(s)	772
FokI	GGATG	3 cut(s)	111, 394, 487
FriOI	GRGCYC	2 cut(s)	312, 909
Fsp4HI	GCNGC	1 cut(s)	772
FspAI	RTGCGCAY	1 cut(s)	522
FspI	TGCGCA	1 cut(s)	522
GlaI	GCGC	3 cut(s)	42, 295, 522
GluI	GCNGC	1 cut(s)	772
GsaI	CCCAGC	1 cut(s)	858
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	3 cut(s)	38, 44, 71
HhaI	GCGC	3 cut(s)	43, 296, 523
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	379, 602, 608, 905
Hin6I	GCGC	3 cut(s)	41, 294, 521
HinP1I	GCGC	3 cut(s)	41, 294, 521
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	5 cut(s)	88, 156, 677, 748, 826
HpaII	CCGG	3 cut(s)	38, 44, 71
HphI	GGTGA	3 cut(s)	58, 131, 193
Hpy166II	GTNNAC	2 cut(s)	433, 485
Hpy188I	TCNGA	5 cut(s)	216, 563, 647, 682, 747
Hpy188III	TCNNGA	5 cut(s)	71, 153, 160, 535, 757
Hpy8I	GTNNAC	2 cut(s)	433, 485
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	110, 166, 532
HpyCH4III	ACNGT	3 cut(s)	23, 254, 266
HpyCH4IV	ACGT	2 cut(s)	481, 810
HpyCH4V	TGCA	4 cut(s)	433, 692, 901, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 316, 434
HpyF3I	CTNAG	5 cut(s)	126, 552, 570, 588, 867
HpySE526I	ACGT	2 cut(s)	481, 810
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	379, 602, 608, 905
HspAI	GCGC	3 cut(s)	41, 294, 521
KasI	GGCGCC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	367, 873
LmnI	GCTCC	3 cut(s)	40, 73, 922
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	3 cut(s)	508, 534, 888
MaeII	ACGT	2 cut(s)	481, 810
MaeIII	GTNAC	2 cut(s)	181, 477
MalI	GATC	2 cut(s)	369, 875
MboI	GATC	2 cut(s)	367, 873
MboII	GAAGA	6 cut(s)	337, 455, 550, 853, 883, 895
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	3 cut(s)	312, 435, 909
MluCI	AATT	8 cut(s)	325, 331, 505, 564, 621, 649, 687, 860
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	82, 686
MmeI	TCCRAC	1 cut(s)	900
MnlI	CCTC	4 cut(s)	678, 718, 773, 882
Mph1103I	ATGCAT	1 cut(s)	903
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	2 cut(s)	321, 423
MslI	CAYNNNNRTG	2 cut(s)	380, 603
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	3 cut(s)	38, 44, 71
MspR9I	CCNGG	1 cut(s)	704
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	704
MvnI	CGCG	2 cut(s)	296, 767
MwoI	GCNNNNNNNGC	3 cut(s)	131, 316, 434
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	2 cut(s)	367, 873
NlaIII	CATG	4 cut(s)	379, 602, 608, 905
NlaIV	GGNNCC	4 cut(s)	42, 644, 666, 924
NmuCI	GTSAC	2 cut(s)	181, 477
NsbI	TGCGCA	1 cut(s)	522
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	156, 748, 826
PkrI	GCNGC	1 cut(s)	773
PleI	GAGTC	2 cut(s)	82, 685
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	82, 685
Ppu21I	YACGTR	1 cut(s)	811
PpuMI	RGGWCCY	1 cut(s)	782
PscI	ACATGT	1 cut(s)	375
Psp124BI	GAGCTC	2 cut(s)	312, 909
Psp5II	RGGWCCY	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	702
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	4 cut(s)	42, 644, 666, 924
PspPI	GGNCC	3 cut(s)	401, 731, 782
PspPPI	RGGWCCY	1 cut(s)	782
PsrI	GAACNNNNNNTAC	2 cut(s)	791, 823
PsuI	RGATCY	1 cut(s)	367
RseI	CAYNNNNRTG	2 cut(s)	380, 603
SacI	GAGCTC	2 cut(s)	312, 909
SaqAI	TTAA	2 cut(s)	321, 423
SatI	GCNGC	1 cut(s)	772
Sau3AI	GATC	2 cut(s)	367, 873
Sau96I	GGNCC	3 cut(s)	401, 731, 782
SchI	GAGTC	2 cut(s)	82, 686
ScrFI	CCNGG	1 cut(s)	704
SduI	GDGCHC	3 cut(s)	312, 435, 909
SfaNI	GCATC	3 cut(s)	508, 534, 888
SfoI	GGCGCC	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	43
SinI	GGWCC	3 cut(s)	401, 731, 782
SmiMI	CAYNNNNRTG	2 cut(s)	380, 603
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SnaBI	TACGTA	1 cut(s)	811
Sse9I	AATT	8 cut(s)	325, 331, 505, 564, 621, 649, 687, 860
SsiI	CCGC	2 cut(s)	13, 767
SspDI	GGCGCC	1 cut(s)	40
SstI	GAGCTC	2 cut(s)	312, 909
StyD4I	CCNGG	1 cut(s)	702
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	3 cut(s)	23, 254, 266
TaiI	ACGT	2 cut(s)	484, 813
TaqI	TCGA	3 cut(s)	348, 723, 829
TasI	AATT	8 cut(s)	325, 331, 505, 564, 621, 649, 687, 860
TfiI	GAWTC	3 cut(s)	156, 748, 826
Tru1I	TTAA	2 cut(s)	321, 423
Tru9I	TTAA	2 cut(s)	321, 423
TscAI	CASTG	4 cut(s)	28, 257, 463, 530
TseFI	GTSAC	2 cut(s)	181, 477
TseI	GCWGC	1 cut(s)	771
Tsp45I	GTSAC	2 cut(s)	181, 477
TspDTI	ATGAA	2 cut(s)	138, 464
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	4 cut(s)	28, 257, 463, 530
Vha464I	CTTAAG	1 cut(s)	320
VneI	GTGCAC	1 cut(s)	431
VpaK11BI	GGWCC	3 cut(s)	401, 731, 782
XagI	CCTNNNNNAGG	1 cut(s)	722
XapI	RAATTY	3 cut(s)	325, 564, 860
XceI	RCATGY	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.