Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003126.1

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Forward (+)

11524 .. 14454

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003126.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggcgaagaagagaaagcacagcgagagtgaggctgcgccgcagaagaaggaggaggtggctccggagagacccaaacgaacgcttctgggctggaaggacaggaaggatgaccaacccaaagaaactgagtccacaccagtcttcaggaacaaagagaaggtcctcgttacttgttctcgtcgaattaattacaggtatcgacatttgatgttgaatgtggtggacctattgcctcattgtaagaaggacaacaaggtggagtcgaagtcgagtaaaggtgcaacccttaatgagctggttgagctaaagagttgctcttcctgtctctttttcgagtgcaggaaaggaaaggacctttatatgtggatggcaaaatctcccagtggaccatctgtgaaattcctagtgaatgctgtgcacacaatggaggaattgaagcttacaggaaatcatctaaaagggtcgcgtcctttgttaactttttcatccaattttgataaggatcctcactggaaacttttgaaagagatgatcacacagatatttggcactccaaaggagcacagaaaatctaagccttatcatgatcatgtctttgttttctctatcgttgatgaccacatatggttcagaaattatcagatatcagttccccataatgaatcagataaaatagctcgaggtggattggataaaatgaccctgatcgaggttggtcctcgattttgtttgaatccaatcaagatatttgctggcagctttgggggcccaacactatatgagaatccattttacatatcgccaaatcagattcgatcaatgcagaaaaagaagaaggctgggacttttgttaagaaagtcaaagcaaagacaaggagaaagatgcatgagcttgaaaatccactggagcaggatgagtttgctgaaatgtggaaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

314

Amino Acids

36.55

Weight (kDa)

9.65

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	469
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	500, 513
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	712
AgsI	TTSAA	5 cut(s)	217, 439, 526, 736, 899
AluBI	AGCT	6 cut(s)	298, 307, 442, 680, 762, 895
AluI	AGCT	6 cut(s)	298, 307, 442, 680, 762, 895
Alw21I	GWGCWC	2 cut(s)	423, 567
Alw26I	GTCTC	2 cut(s)	64, 332
Alw44I	GTGCAC	1 cut(s)	419
AlwI	GGATC	2 cut(s)	500, 513
Ama87I	CYCGRG	1 cut(s)	681
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	1 cut(s)	769
ApaI	GGGCCC	1 cut(s)	773
ApaLI	GTGCAC	1 cut(s)	419
ApeKI	GCWGC	2 cut(s)	35, 759
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	7 cut(s)	163, 226, 355, 389, 719, 769, 770
AvaI	CYCGRG	1 cut(s)	681
AvaII	GGWCC	5 cut(s)	163, 226, 355, 389, 719
BaeGI	GKGCMC	2 cut(s)	423, 773
BamHI	GGATCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	423, 567
BbvI	GCAGC	2 cut(s)	22, 771
BccI	CCATC	2 cut(s)	364, 400
BclI	TGATCA	2 cut(s)	534, 589
BcoDI	GTCTC	2 cut(s)	64, 332
BfaI	CTAG	1 cut(s)	407
BisI	GCNGC	3 cut(s)	36, 41, 760
BlsI	GCNGC	3 cut(s)	37, 42, 761
Bme18I	GGWCC	5 cut(s)	163, 226, 355, 389, 719
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	7 cut(s)	163, 226, 355, 389, 719, 769, 770
BmiI	GGNNCC	4 cut(s)	63, 507, 770, 771
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	876
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	929
BsaBI	GATNNNNATC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse1I	ACTGG	4 cut(s)	140, 384, 518, 912
Bse8I	GATNNNNATC	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	64
BseGI	GGATG	4 cut(s)	115, 375, 488, 922
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	140, 384, 518, 912
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	2 cut(s)	423, 773
BseXI	GCAGC	2 cut(s)	22, 771
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	771
BsiHKAI	GWGCWC	2 cut(s)	423, 567
BsiHKCI	CYCGRG	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmAI	GTCTC	2 cut(s)	64, 332
BsmFI	GGGAC	1 cut(s)	859
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	771
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	681
Bsp120I	GGGCCC	1 cut(s)	769
Bsp1286I	GDGCHC	3 cut(s)	423, 567, 773
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	5 cut(s)	505, 534, 589, 708, 818
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	771
BspCNI	CTCAG	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	63, 507, 770, 771
BspPI	GGATC	2 cut(s)	500, 513
BspQI	GCTCTTC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	64
BsrI	ACTGG	4 cut(s)	140, 384, 518, 912
BssMI	GATC	5 cut(s)	505, 534, 589, 708, 818
Bst6I	CTCTTC	2 cut(s)	5, 325
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	2 cut(s)	129, 576
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	115, 375, 488, 922
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	5 cut(s)	508, 537, 592, 711, 821
BstMAI	GTCTC	2 cut(s)	64, 332
BstMBI	GATC	5 cut(s)	505, 534, 589, 708, 818
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 768
BstSLI	GKGCMC	2 cut(s)	423, 773
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	22, 771
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	771
BtsCI	GGATG	4 cut(s)	115, 375, 488, 922
BtsIMutI	CAGTG	3 cut(s)	391, 511, 905
Cac8I	GCNNGC	1 cut(s)	757
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	7 cut(s)	163, 226, 355, 389, 719, 769, 770
CseI	GACGC	1 cut(s)	458
CviAII	CATG	3 cut(s)	587, 593, 890
DdeI	CTNAG	2 cut(s)	129, 576
DpnI	GATC	5 cut(s)	507, 536, 591, 710, 820
DpnII	GATC	5 cut(s)	505, 534, 589, 708, 818
Eam1104I	CTCTTC	2 cut(s)	5, 325
EarI	CTCTTC	2 cut(s)	5, 325
Eco24I	GRGCYC	1 cut(s)	773
Eco31I	GGTCTC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	648
Eco47I	GGWCC	5 cut(s)	163, 226, 355, 389, 719
Eco57I	CTGAAG	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	681
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO109I	RGGNCCY	3 cut(s)	163, 355, 769
EcoRV	GATATC	1 cut(s)	648
EcoT22I	ATGCAT	1 cut(s)	891
EcoT38I	GRGCYC	1 cut(s)	773
FaeI	CATG	3 cut(s)	590, 596, 893
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	3 cut(s)	586, 592, 889
FauNDI	CATATG	1 cut(s)	626
FbaI	TGATCA	2 cut(s)	534, 589
Fnu4HI	GCNGC	3 cut(s)	36, 41, 760
FokI	GGATG	4 cut(s)	122, 382, 475, 929
FriOI	GRGCYC	1 cut(s)	773
Fsp4HI	GCNGC	3 cut(s)	36, 41, 760
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	36, 41, 760
GsaI	CCCAGC	1 cut(s)	846
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	1 cut(s)	771
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	590, 596, 893
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	6 cut(s)	131, 263, 665, 736, 787, 814
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	5 cut(s)	135, 226, 389, 421, 480
Hpy188I	TCNGA	4 cut(s)	635, 645, 670, 813
Hpy188III	TCNNGA	4 cut(s)	65, 148, 587, 745
Hpy8I	GTNNAC	5 cut(s)	135, 226, 389, 421, 480
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	7 cut(s)	43, 91, 100, 154, 241, 832, 931
HpyCH4V	TGCA	5 cut(s)	284, 342, 421, 826, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 768
HpyF3I	CTNAG	2 cut(s)	129, 576
Hsp92II	CATG	3 cut(s)	590, 596, 893
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	64
Ksp22I	TGATCA	2 cut(s)	534, 589
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	5 cut(s)	505, 534, 589, 708, 818
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	3 cut(s)	67, 562, 910
Lsp1109I	GCAGC	2 cut(s)	22, 771
LweI	GCATC	1 cut(s)	876
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	5 cut(s)	507, 536, 591, 710, 820
MboI	GATC	5 cut(s)	505, 534, 589, 708, 818
MboII	GAAGA	6 cut(s)	19, 22, 58, 136, 312, 847
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	3 cut(s)	423, 567, 773
MluCI	AATT	6 cut(s)	186, 190, 401, 434, 493, 637
MlyI	GAGTC	2 cut(s)	140, 272
Mph1103I	ATGCAT	1 cut(s)	891
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	4 cut(s)	189, 291, 479, 855
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	418
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	304, 768
NdeI	CATATG	1 cut(s)	626
NdeII	GATC	5 cut(s)	505, 534, 589, 708, 818
NlaIII	CATG	3 cut(s)	590, 596, 893
NlaIV	GGNNCC	4 cut(s)	63, 507, 770, 771
NsiI	ATGCAT	1 cut(s)	891
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	325
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	4 cut(s)	665, 736, 787, 814
PkrI	GCNGC	3 cut(s)	37, 42, 761
PleI	GAGTC	2 cut(s)	139, 271
PpsI	GAGTC	2 cut(s)	139, 271
PpuMI	RGGWCCY	2 cut(s)	163, 355
PshBI	ATTAAT	1 cut(s)	189
Psp5II	RGGWCCY	2 cut(s)	163, 355
PspFI	CCCAGC	1 cut(s)	842
PspN4I	GGNNCC	4 cut(s)	63, 507, 770, 771
PspOMI	GGGCCC	1 cut(s)	769
PspPI	GGNCC	7 cut(s)	163, 226, 355, 389, 719, 769, 770
PspPPI	RGGWCCY	2 cut(s)	163, 355
PspXI	VCTCGAGB	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	189, 291, 479, 855
SatI	GCNGC	3 cut(s)	36, 41, 760
Sau3AI	GATC	5 cut(s)	505, 534, 589, 708, 818
Sau96I	GGNCC	7 cut(s)	163, 226, 355, 389, 719, 769, 770
SchI	GAGTC	2 cut(s)	140, 272
SduI	GDGCHC	3 cut(s)	423, 567, 773
SfaNI	GCATC	1 cut(s)	876
Sfr274I	CTCGAG	1 cut(s)	681
SinI	GGWCC	5 cut(s)	163, 226, 355, 389, 719
SlaI	CTCGAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	681
SmoI	CTYRAG	1 cut(s)	681
Sse9I	AATT	6 cut(s)	186, 190, 401, 434, 493, 637
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	407
TaqI	TCGA	9 cut(s)	184, 202, 266, 272, 336, 682, 711, 724, 817
TasI	AATT	6 cut(s)	186, 190, 401, 434, 493, 637
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	4 cut(s)	665, 736, 787, 814
Tru1I	TTAA	4 cut(s)	189, 291, 479, 855
Tru9I	TTAA	4 cut(s)	189, 291, 479, 855
TscAI	CASTG	3 cut(s)	391, 518, 912
TseI	GCWGC	2 cut(s)	35, 759
TspDTI	ATGAA	2 cut(s)	477, 678
TspRI	CASTG	3 cut(s)	391, 518, 912
VneI	GTGCAC	1 cut(s)	419
VpaK11BI	GGWCC	5 cut(s)	163, 226, 355, 389, 719
VspI	ATTAAT	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	681
XspI	CTAG	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.