Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Reverse (-)

11008306 .. 11012436

Gene Structure 4131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G185500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGGAAGAAGAGAAAGCACAGCGAGGCTGAGGCTGCGACTCGAGAAAAGAAGGAGGAGGAGGTCGCTCCAGAGAGGCCTAAGCGAACGCTTTCCGGTTGGAAGGAGAAGAAGGATGACCAAGTAAACCAAACTGAATCAACGACATTCTTTAGGAACAAAGAGAAGGTTTTGGTTACTTGTTCTCGTCGAATTAGCTACAGGTATCGGCATTTGATGTTGAATGTGGTGGACCTATTGCCTCATTGTAAGAAGGACAATAAAGTTGAGTCTAAGTCAAGTAACGGCGCAACTCTTAATGAGCTGGTCGACCTAAAGAGTTGCTCTTCCTGTATGTTTTTTGAGTGCAGGAAGGGGAAAGATCTTTATCTGTGGATGTCAAAATGTCCTAATGGGCCATCTGTGAAATTCTTAGTGAATGCTGTGCACACAATGGAGGAATTGAAGCTTACTGGAAATCATCTAAAAGGGTCACGACCTATTCTGACTTTTTCATCCAATTTTGATAAAGATGCCCACTGGAAGCTTTTGAAGGAAATGATCACTCAGATATTTGGCATTCCAAAGGAGCACAGGAAATCTAAGCCCTATCATGATCATGTCTTTGTTTTCTCTATCGTTGATGACCACATTTGGTTCCGAAACTATCAGATATCGGTTCCACATAACGAATCAGATAAAATAGCTCGAGGGGGATTAGATAAAATGACCCTTGTTGAGGTTGGACCACGATTTTGTTTGAATCCTATCAAGATATTTGGCGGCAGCTTTGGAGGACCAACATTATATGAGAATCCATTTTACATATCACCTAATCAGATTCGAGCACTGGAGAAAAAGAAGAAGGCCGGGCATTATGTGAAGAAAGTCAAGGCAAAGACGAGGAGAAAAATGCATGAGCTTGACAACCCACTTGAGGCTGATGAGTTTTCTGAGATGTGGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

317

Amino Acids

36.73

Weight (kDa)

9.49

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	1 cut(s)	762
AcsI	RAATTY	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	718, 916
AgsI	TTSAA	4 cut(s)	223, 445, 532, 742
AluBI	AGCT	7 cut(s)	198, 304, 448, 526, 686, 768, 901
AluI	AGCT	7 cut(s)	198, 304, 448, 526, 686, 768, 901
Alw21I	GWGCWC	3 cut(s)	429, 573, 829
Alw44I	GTGCAC	1 cut(s)	425
Ama87I	CYCGRG	2 cut(s)	42, 687
AoxI	GGCC	3 cut(s)	77, 395, 846
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	35, 765
ApoI	RAATTY	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	717, 749
Asp700I	GAANNNNTTC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	4 cut(s)	232, 395, 725, 776
AsuC2I	CCSGG	1 cut(s)	850
AsuHPI	GGTGA	1 cut(s)	801
AvaI	CYCGRG	2 cut(s)	42, 687
AvaII	GGWCC	3 cut(s)	232, 725, 776
BaeGI	GKGCMC	1 cut(s)	429
Bbv12I	GWGCWC	3 cut(s)	429, 573, 829
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	22, 777
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	301
BclI	TGATCA	2 cut(s)	540, 595
BcnI	CCSGG	1 cut(s)	850
BfmI	CTRYAG	1 cut(s)	199
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	36, 763, 766
BlsI	GCNGC	3 cut(s)	37, 764, 767
Bme1390I	CCNGG	1 cut(s)	850
Bme18I	GGWCC	3 cut(s)	232, 725, 776
BmeT110I	CYCGRG	2 cut(s)	42, 687
BmgT120I	GGNCC	4 cut(s)	232, 395, 725, 776
BmiI	GGNNCC	2 cut(s)	638, 660
BmrFI	CCNGG	1 cut(s)	850
BmsI	GCATC	1 cut(s)	502
BpmI	CTGGAG	2 cut(s)	54, 851
Bpu10I	CCTNAGC	2 cut(s)	30, 81
BpuEI	CTTGAG	1 cut(s)	935
BpuMI	CCSGG	1 cut(s)	850
BsaBI	GATNNNNATC	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	718, 916
Bse1I	ACTGG	3 cut(s)	457, 524, 834
Bse8I	GATNNNNATC	1 cut(s)	366
BseGI	GGATG	3 cut(s)	121, 381, 494
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	718, 916
BseMII	CTCAG	3 cut(s)	21, 560, 924
BseNI	ACTGG	3 cut(s)	457, 524, 834
BseRI	GAGGAG	3 cut(s)	71, 74, 898
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	22, 777
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	3 cut(s)	79, 397, 848
BsiHKAI	GWGCWC	3 cut(s)	429, 573, 829
BsiHKCI	CYCGRG	2 cut(s)	42, 687
BsiSI	CCGG	2 cut(s)	96, 849
BslI	CCNNNNNNNGG	2 cut(s)	718, 916
BsmI	GAATGC	2 cut(s)	424, 558
BsnI	GGCC	3 cut(s)	79, 397, 848
BsoBI	CYCGRG	2 cut(s)	42, 687
Bsp1286I	GDGCHC	3 cut(s)	429, 573, 829
Bsp143I	GATC	3 cut(s)	361, 540, 595
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	3 cut(s)	79, 397, 848
BspCNI	CTCAG	3 cut(s)	22, 559, 925
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	638, 660
BspQI	GCTCTTC	1 cut(s)	331
BsrI	ACTGG	3 cut(s)	457, 524, 834
BssMI	GATC	3 cut(s)	361, 540, 595
Bst6I	CTCTTC	2 cut(s)	5, 331
BstDEI	CTNAG	7 cut(s)	30, 81, 273, 412, 546, 582, 933
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	121, 381, 494
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	3 cut(s)	364, 543, 598
BstMBI	GATC	3 cut(s)	361, 540, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	848
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	22, 777
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	79, 397, 848
BtsCI	GGATG	3 cut(s)	121, 381, 494
BtsIMutI	CAGTG	2 cut(s)	517, 827
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	232, 395, 725, 776
CviAII	CATG	3 cut(s)	593, 599, 896
DdeI	CTNAG	7 cut(s)	30, 81, 273, 412, 546, 582, 933
DpnI	GATC	3 cut(s)	363, 542, 597
DpnII	GATC	3 cut(s)	361, 540, 595
Eam1104I	CTCTTC	2 cut(s)	5, 331
EarI	CTCTTC	2 cut(s)	5, 331
Eco147I	AGGCCT	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	654
Eco47I	GGWCC	3 cut(s)	232, 725, 776
Eco88I	CYCGRG	2 cut(s)	42, 687
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	654
EcoT22I	ATGCAT	1 cut(s)	897
FaeI	CATG	3 cut(s)	596, 602, 899
FaiI	YATR	9 cut(s)	335, 594, 600, 666, 787, 789, 806, 858, 897
FatI	CATG	3 cut(s)	592, 598, 895
FbaI	TGATCA	2 cut(s)	540, 595
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	36, 763, 766
FokI	GGATG	3 cut(s)	128, 388, 481
Fsp4HI	GCNGC	3 cut(s)	36, 763, 766
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	3 cut(s)	36, 763, 766
GsuI	CTGGAG	2 cut(s)	54, 851
HaeIII	GGCC	3 cut(s)	79, 397, 848
HapII	CCGG	2 cut(s)	96, 849
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	596, 602, 899
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	446, 524
HinfI	GANTC	7 cut(s)	40, 137, 269, 671, 742, 793, 820
HpaII	CCGG	2 cut(s)	96, 849
HphI	GGTGA	1 cut(s)	801
Hpy166II	GTNNAC	4 cut(s)	127, 232, 310, 427
Hpy188I	TCNGA	7 cut(s)	486, 549, 641, 651, 676, 819, 934
Hpy188III	TCNNGA	5 cut(s)	44, 71, 474, 593, 751
Hpy8I	GTNNAC	4 cut(s)	127, 232, 310, 427
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	9 cut(s)	46, 97, 106, 160, 247, 346, 526, 838, 937
HpyCH4V	TGCA	3 cut(s)	348, 427, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	7 cut(s)	30, 81, 273, 412, 546, 582, 933
Hsp92II	CATG	3 cut(s)	596, 602, 899
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	2 cut(s)	540, 595
Kzo9I	GATC	3 cut(s)	361, 540, 595
LguI	GCTCTTC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	73, 568
Lsp1109I	GCAGC	2 cut(s)	22, 777
LweI	GCATC	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	175, 281, 471
MalI	GATC	3 cut(s)	363, 542, 597
MboI	GATC	3 cut(s)	361, 540, 595
MboII	GAAGA	6 cut(s)	19, 22, 121, 318, 853, 874
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	429, 573, 829
MluCI	AATT	4 cut(s)	192, 407, 440, 499
MlyI	GAGTC	2 cut(s)	34, 278
MmeI	TCCRAC	2 cut(s)	80, 703
Mph1103I	ATGCAT	1 cut(s)	897
MroXI	GAANNNNTTC	1 cut(s)	91
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	2 cut(s)	96, 849
MspR9I	CCNGG	1 cut(s)	850
Mva1269I	GAATGC	2 cut(s)	424, 558
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	850
NdeII	GATC	3 cut(s)	361, 540, 595
NlaIII	CATG	3 cut(s)	596, 602, 899
NlaIV	GGNNCC	2 cut(s)	638, 660
NmuCI	GTSAC	1 cut(s)	471
NsiI	ATGCAT	1 cut(s)	897
PaeR7I	CTCGAG	2 cut(s)	42, 687
PagI	TCATGA	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	331
PctI	GAATGC	2 cut(s)	424, 558
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	5 cut(s)	137, 671, 742, 793, 820
PkrI	GCNGC	3 cut(s)	37, 764, 767
PleI	GAGTC	2 cut(s)	34, 277
PpsI	GAGTC	2 cut(s)	34, 277
PspN4I	GGNNCC	2 cut(s)	638, 660
PspPI	GGNCC	4 cut(s)	232, 395, 725, 776
PspXI	VCTCGAGB	1 cut(s)	687
PsuI	RGATCY	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	597
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	3 cut(s)	36, 763, 766
Sau3AI	GATC	3 cut(s)	361, 540, 595
Sau96I	GGNCC	4 cut(s)	232, 395, 725, 776
SchI	GAGTC	2 cut(s)	34, 278
ScrFI	CCNGG	1 cut(s)	850
SduI	GDGCHC	3 cut(s)	429, 573, 829
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	199
Sfr274I	CTCGAG	2 cut(s)	42, 687
SinI	GGWCC	3 cut(s)	232, 725, 776
SlaI	CTCGAG	2 cut(s)	42, 687
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	3 cut(s)	42, 687, 914
SmoI	CTYRAG	3 cut(s)	42, 687, 914
Sse9I	AATT	4 cut(s)	192, 407, 440, 499
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	762
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	848
TaqI	TCGA	5 cut(s)	43, 190, 309, 688, 823
TasI	AATT	4 cut(s)	192, 407, 440, 499
TauI	GCSGC	1 cut(s)	765
TfiI	GAWTC	5 cut(s)	137, 671, 742, 793, 820
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	524, 834
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	2 cut(s)	35, 765
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	524, 834
VneI	GTGCAC	1 cut(s)	425
VpaK11BI	GGWCC	3 cut(s)	232, 725, 776
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	1 cut(s)	407
XhoI	CTCGAG	2 cut(s)	42, 687
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.