Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Forward (+)

30909396 .. 30922536

Gene Structure 13141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1224000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGAAGAAGAGAAAGCACAGCGATGCCCTGGCTCCAGAAAAGAAGGAGGAGGAGGTTGCGCCGGAGAGGCGGAAGCGAACGCTTTCCGGTTGGAAGGAGAAGAAGGACGACGACGAAGTAAAAGCGAGTGAATCGACGGCAGTGTTTAGGAACAAAGAAAAGGTCTTAGTTACTTGTTCTCGTCGCATTAGTTACAGGTATCGGCATCTGATGTTGAATGTGGTGGACCTATTGCCTCATTGTAAGAAGGACAATAAGGTGGAGTCTAAATCAAGTAACGGTGCAACTCTTAACGAGCTGGTTGAGCTAAAGAGTTGCTCTTCCTGTATGTTTTTTGAGTGCAGGAAAGGGAAAGATCTGTATCTGTGGATGTCAAAGTGTCCCAATGGGCCATCTGTGAAGTTCTTAGTAAATGCTGTGCACACGATGGAGGAGTTGAAGCTTACTGGAAATCATCTAAAGGGGTCACGACCTATTTTGACTTTTTCATCCAATTTTGATAAAGATGCCCACTGGAAGCTTCTGAAGGAAATGATCACTCAGATTTTTGGCATTCCCAAGGAGCACAGAAAATCTAAACCCTATCATGATCATGTTTTTGTATTCTCTATCGTTGATGACCACATTTGGTTCCGAAACTATCAGATATCAGTTCCTCATAACGAATTGGATAAAATAGCTCGAGGAGGCTTAGATAAAATGACCCTTGTTGAGGTTGGACCGCGATTTTGTTTGAATCCTATCAAGATATTTGGTGGCAGCTTTGGAGGTCCAACACTATATGAGAATCCATTTTACATATCACCCAATCAGATTCGAGCAATGGAGAAAAAGAAGAAGGCTGGGACCTTTGTCAAGAAAGTCAAAGCAAAGACAAGGAGAAAAATGCATGAGCTTGAAAATCCACTGGAGCCTGATGAGTTTTCTGAGATGTGGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

316

Amino Acids

36.56

Weight (kDa)

9.49

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	61 - 250	2.3e-44	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	727
AciI	CCGC	2 cut(s)	73, 725
AcuI	CTGAAG	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	715
AgsI	TTSAA	4 cut(s)	220, 442, 739, 902
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	7 cut(s)	301, 310, 445, 523, 683, 765, 898
AluI	AGCT	7 cut(s)	301, 310, 445, 523, 683, 765, 898
Alw21I	GWGCWC	2 cut(s)	426, 570
Alw44I	GTGCAC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	684
AoxI	GGCC	1 cut(s)	392
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	762
ArsI	GACNNNNNNTTYG	4 cut(s)	150, 182, 714, 746
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	5 cut(s)	229, 392, 722, 773, 849
AsuHPI	GGTGA	1 cut(s)	798
AvaI	CYCGRG	1 cut(s)	684
AvaII	GGWCC	4 cut(s)	229, 722, 773, 849
BaeGI	GKGCMC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	426, 570
BbvI	GCAGC	1 cut(s)	774
BccI	CCATC	2 cut(s)	403, 424
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	2 cut(s)	537, 592
BglI	GCCNNNNNGGC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	1 cut(s)	763
BlsI	GCNGC	1 cut(s)	764
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	4 cut(s)	229, 722, 773, 849
BmeT110I	CYCGRG	1 cut(s)	684
BmgT120I	GGNCC	5 cut(s)	229, 392, 722, 773, 849
BmiI	GGNNCC	4 cut(s)	36, 635, 850, 915
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	3 cut(s)	16, 217, 499
BoxI	GACNNNNGTC	1 cut(s)	854
BpmI	CTGGAG	2 cut(s)	21, 932
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	30, 561
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	3 cut(s)	454, 521, 915
Bse3DI	GCAATG	1 cut(s)	831
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	30, 561
BseGI	GGATG	2 cut(s)	378, 491
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	2 cut(s)	557, 921
BseNI	ACTGG	3 cut(s)	454, 521, 915
BseRI	GAGGAG	4 cut(s)	65, 68, 449, 702
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	774
BseYI	CCCAGC	1 cut(s)	845
BsgI	GTGCAG	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	727
BshFI	GGCC	1 cut(s)	394
BsiHKAI	GWGCWC	2 cut(s)	426, 570
BsiHKCI	CYCGRG	1 cut(s)	684
BsiSI	CCGG	2 cut(s)	65, 90
BslFI	GGGAC	2 cut(s)	369, 862
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmFI	GGGAC	2 cut(s)	369, 862
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	684
Bsp1286I	GDGCHC	2 cut(s)	426, 570
Bsp143I	GATC	3 cut(s)	358, 537, 592
BspACI	CCGC	2 cut(s)	73, 725
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	2 cut(s)	556, 922
BspFNI	CGCG	1 cut(s)	727
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	4 cut(s)	36, 635, 850, 915
BspQI	GCTCTTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	3 cut(s)	454, 521, 915
BssECI	CCNNGG	2 cut(s)	30, 561
BssMI	GATC	3 cut(s)	358, 537, 592
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	5, 328
BstDEI	CTNAG	5 cut(s)	169, 409, 543, 694, 930
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	378, 491
BstFNI	CGCG	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	361, 540, 595
BstMBI	GATC	3 cut(s)	358, 537, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 307
BstNI	CCWGG	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	854
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	426
BstUI	CGCG	1 cut(s)	727
BstV1I	GCAGC	1 cut(s)	774
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	378, 491
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	150, 514, 908
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	5 cut(s)	229, 392, 722, 773, 849
CviAII	CATG	3 cut(s)	590, 596, 893
DdeI	CTNAG	5 cut(s)	169, 409, 543, 694, 930
DpnI	GATC	3 cut(s)	360, 539, 594
DpnII	GATC	3 cut(s)	358, 537, 592
Eam1104I	CTCTTC	2 cut(s)	5, 328
EarI	CTCTTC	2 cut(s)	5, 328
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	651
Eco47I	GGWCC	4 cut(s)	229, 722, 773, 849
Eco57I	CTGAAG	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	684
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	849
EcoRII	CCWGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	593, 599, 896
FaiI	YATR	8 cut(s)	332, 591, 597, 663, 784, 786, 803, 894
FaqI	GGGAC	2 cut(s)	369, 862
FatI	CATG	3 cut(s)	589, 595, 892
FbaI	TGATCA	2 cut(s)	537, 592
Fnu4HI	GCNGC	1 cut(s)	763
FokI	GGATG	2 cut(s)	385, 478
Fsp4HI	GCNGC	1 cut(s)	763
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	763
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	2 cut(s)	21, 932
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	65, 90
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	593, 599, 896
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	443, 521
HinfI	GANTC	5 cut(s)	134, 266, 739, 790, 817
HpaII	CCGG	2 cut(s)	65, 90
HphI	GGTGA	1 cut(s)	798
Hpy166II	GTNNAC	2 cut(s)	229, 424
Hpy188I	TCNGA	7 cut(s)	213, 528, 546, 638, 648, 816, 931
Hpy188III	TCNNGA	5 cut(s)	38, 471, 590, 748, 859
Hpy8I	GTNNAC	2 cut(s)	229, 424
Hpy99I	CGWCG	4 cut(s)	116, 119, 142, 189
HpyAV	CCTTC	7 cut(s)	40, 91, 100, 244, 523, 835, 934
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	287, 345, 424, 892
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 307
HpyF3I	CTNAG	5 cut(s)	169, 409, 543, 694, 930
Hsp92II	CATG	3 cut(s)	593, 599, 896
HspAI	GCGC	1 cut(s)	62
Ksp22I	TGATCA	2 cut(s)	537, 592
Kzo9I	GATC	3 cut(s)	358, 537, 592
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	40, 565, 913
Lsp1109I	GCAGC	1 cut(s)	774
LweI	GCATC	3 cut(s)	16, 217, 499
MaeIII	GTNAC	4 cut(s)	172, 194, 278, 468
MalI	GATC	3 cut(s)	360, 539, 594
MboI	GATC	3 cut(s)	358, 537, 592
MboII	GAAGA	5 cut(s)	19, 22, 115, 315, 850
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	426, 570
MluCI	AATT	2 cut(s)	496, 668
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	3 cut(s)	74, 700, 800
Mph1103I	ATGCAT	1 cut(s)	894
MroXI	GAANNNNTTC	1 cut(s)	85
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	2 cut(s)	24, 594
MspI	CCGG	2 cut(s)	65, 90
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	2 cut(s)	70, 307
NdeII	GATC	3 cut(s)	358, 537, 592
NlaIII	CATG	3 cut(s)	593, 599, 896
NlaIV	GGNNCC	4 cut(s)	36, 635, 850, 915
NmuCI	GTSAC	1 cut(s)	468
NsiI	ATGCAT	1 cut(s)	894
PaeR7I	CTCGAG	1 cut(s)	684
PagI	TCATGA	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	328
PctI	GAATGC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	134, 739, 790, 817
PkrI	GCNGC	1 cut(s)	764
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	849
PshAI	GACNNNNGTC	1 cut(s)	854
Psp5II	RGGWCCY	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	36, 635, 850, 915
PspPI	GGNCC	5 cut(s)	229, 392, 722, 773, 849
PspPPI	RGGWCCY	1 cut(s)	849
PspXI	VCTCGAGB	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	24, 594
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	763
Sau3AI	GATC	3 cut(s)	358, 537, 592
Sau96I	GGNCC	5 cut(s)	229, 392, 722, 773, 849
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	426, 570
SfaNI	GCATC	3 cut(s)	16, 217, 499
Sfr274I	CTCGAG	1 cut(s)	684
SinI	GGWCC	4 cut(s)	229, 722, 773, 849
SlaI	CTCGAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	2 cut(s)	24, 594
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	2 cut(s)	496, 668
SsiI	CCGC	2 cut(s)	73, 725
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	137, 685, 820
TasI	AATT	2 cut(s)	496, 668
TfiI	GAWTC	4 cut(s)	134, 739, 790, 817
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	3 cut(s)	150, 521, 915
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	1 cut(s)	762
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	3 cut(s)	150, 521, 915
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	4 cut(s)	229, 722, 773, 849
XagI	CCTNNNNNAGG	1 cut(s)	713
XhoI	CTCGAG	1 cut(s)	684
XmnI	GAANNNNTTC	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.