Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Reverse (-)

5214084 .. 5216261

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGAGGAAGAGAAAGCACAGCGAGACTGTTACGGCGGCACCGGTGAAGGATTCTGCTCCGGAGAGACCTCAAAGGACTCTTTTGGGTTGGAAAGATAAGAAGGAAGATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATTCAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTAGAAGCTAAGAGCAGTAGAGGTGCCACTCTTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTGTTTGTTTTTCGAGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGGTGGACCTTCCGTTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCACTGGAAATCATCTGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAACGATGCACACTGGAAACTTCTGAAAGAGATGTTAACTCAGATTTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGGCGATCTGGATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAAGATATTTGGAGGCAGCTTTGGAGGTACAACGCTTTACGAGAACCCATTCTATGTATCTCCAAACCAGATTCGAGCTTTGGAGAAAAGAAATAAAGCTGGGAAATTTGCTAAGAAAATAAAGGCAAAAACAAGAAGAAAGATGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTACAGACATGTGGAACGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

315

Amino Acids

36.35

Weight (kDa)

9.64

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	60 - 249	4.5e-43	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
Acc65I	GGTACC	1 cut(s)	652
AccB1I	GGYRCC	3 cut(s)	40, 281, 652
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	3 cut(s)	552, 848, 920
AfaI	GTAC	2 cut(s)	654, 772
AfiI	CCNNNNNNNGG	1 cut(s)	649
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	2 cut(s)	363, 930
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	217, 500
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	7 cut(s)	266, 298, 307, 436, 762, 821, 842
AluI	AGCT	7 cut(s)	266, 298, 307, 436, 762, 821, 842
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	20, 61
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	557
Aor13HI	TCCGGA	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	759
ApoI	RAATTY	3 cut(s)	552, 848, 920
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AsiGI	ACCGGT	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	791
Asp718I	GGTACC	1 cut(s)	652
AspS9I	GGNCC	2 cut(s)	389, 719
AsuHPI	GGTGA	2 cut(s)	58, 385
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	389, 719
BanI	GGYRCC	3 cut(s)	40, 281, 652
BanII	GRGCYC	2 cut(s)	300, 317
BauI	CACGAG	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	771
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	20, 61
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	2 cut(s)	39, 760
BlsI	GCNGC	2 cut(s)	40, 761
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	2 cut(s)	389, 719
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	389, 719
BmiI	GGNNCC	5 cut(s)	42, 283, 632, 654, 912
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	3 cut(s)	100, 496, 876
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	382, 558, 722
BsaWI	WCCGGW	2 cut(s)	43, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	451, 518
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	382, 558, 722
BseGI	GGATG	2 cut(s)	375, 488
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMII	CTCAG	2 cut(s)	105, 554
BseNI	ACTGG	2 cut(s)	451, 518
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	771
BseYI	CCCAGC	1 cut(s)	842
BshNI	GGYRCC	3 cut(s)	40, 281, 652
BshTI	ACCGGT	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	44, 62
BslFI	GGGAC	2 cut(s)	364, 576
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmAI	GTCTC	2 cut(s)	20, 61
BsmFI	GGGAC	2 cut(s)	364, 576
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	2 cut(s)	300, 317
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	186, 355, 688
BspACI	CCGC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	106, 553
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	5 cut(s)	42, 283, 632, 654, 912
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	322
BspT107I	GGYRCC	3 cut(s)	40, 281, 652
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	451, 518
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	382, 558, 722
BssMI	GATC	3 cut(s)	186, 355, 688
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	31, 242
Bst6I	CTCTTC	2 cut(s)	5, 322
BstAFI	CTTAAG	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	114, 267, 540, 855
BstF5I	GGATG	2 cut(s)	375, 488
BstKTI	GATC	3 cut(s)	189, 358, 691
BstMAI	GTCTC	2 cut(s)	20, 61
BstMBI	GATC	3 cut(s)	186, 355, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	2 cut(s)	367, 934
BstSCI	CCNGG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	771
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	375, 488
BtsIMutI	CAGTG	3 cut(s)	238, 444, 511
BveI	ACCTGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	389, 719
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	653, 771
CspAI	ACCGGT	1 cut(s)	43
CviAII	CATG	6 cut(s)	220, 364, 587, 593, 890, 931
CviJI	RGCY	9 cut(s)	266, 298, 307, 315, 436, 762, 821, 842, 913
CviKI_1	RGCY	9 cut(s)	266, 298, 307, 315, 436, 762, 821, 842, 913
CviQI	GTAC	2 cut(s)	653, 771
DdeI	CTNAG	4 cut(s)	114, 267, 540, 855
DpnI	GATC	3 cut(s)	188, 357, 690
DpnII	GATC	3 cut(s)	186, 355, 688
DraI	TTTAAA	1 cut(s)	735
Eam1104I	CTCTTC	2 cut(s)	5, 322
EarI	CTCTTC	2 cut(s)	5, 322
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	722
Eco24I	GRGCYC	2 cut(s)	300, 317
Eco31I	GGTCTC	1 cut(s)	61
Eco32I	GATATC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	389, 719
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	648
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	1 cut(s)	891
EcoT38I	GRGCYC	2 cut(s)	300, 317
ErhI	CCWWGG	1 cut(s)	722
FaeI	CATG	6 cut(s)	223, 367, 590, 596, 893, 934
FaqI	GGGAC	2 cut(s)	364, 576
FatI	CATG	6 cut(s)	219, 363, 586, 592, 889, 930
Fnu4HI	GCNGC	2 cut(s)	39, 760
FokI	GGATG	2 cut(s)	382, 475
FriOI	GRGCYC	2 cut(s)	300, 317
Fsp4HI	GCNGC	2 cut(s)	39, 760
GluI	GCNGC	2 cut(s)	39, 760
GsaI	CCCAGC	1 cut(s)	846
HapII	CCGG	2 cut(s)	44, 62
HgaI	GACGC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	223, 367, 590, 596, 893, 934
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	5 cut(s)	53, 79, 665, 703, 814
HpaI	GTTAAC	1 cut(s)	537
HpaII	CCGG	2 cut(s)	44, 62
HphI	GGTGA	2 cut(s)	58, 385
Hpy166II	GTNNAC	4 cut(s)	389, 421, 467, 537
Hpy188I	TCNGA	5 cut(s)	186, 459, 525, 543, 670
Hpy188III	TCNNGA	4 cut(s)	62, 148, 557, 692
Hpy8I	GTNNAC	4 cut(s)	389, 421, 467, 537
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	5 cut(s)	43, 97, 154, 241, 402
HpyCH4III	ACNGT	2 cut(s)	31, 242
HpyCH4V	TGCA	3 cut(s)	509, 680, 889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	4 cut(s)	114, 267, 540, 855
Hsp92II	CATG	6 cut(s)	223, 367, 590, 596, 893, 934
Kpn2I	TCCGGA	1 cut(s)	61
KpnI	GGTACC	1 cut(s)	656
KspAI	GTTAAC	1 cut(s)	537
Kzo9I	GATC	3 cut(s)	186, 355, 688
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	64, 433, 910
Lsp1109I	GCAGC	1 cut(s)	771
LweI	GCATC	3 cut(s)	100, 496, 876
MaeIII	GTNAC	3 cut(s)	31, 169, 225
MalI	GATC	3 cut(s)	188, 357, 690
MboI	GATC	3 cut(s)	186, 355, 688
MboII	GAAGA	5 cut(s)	22, 119, 309, 312, 891
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	300, 317
MluCI	AATT	7 cut(s)	190, 493, 552, 637, 741, 848, 920
MlyI	GAGTC	3 cut(s)	73, 674, 697
MmeI	TCCRAC	2 cut(s)	71, 164
Mph1103I	ATGCAT	1 cut(s)	891
MroI	TCCGGA	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	791
MseI	TTAA	7 cut(s)	291, 309, 399, 411, 536, 734, 744
MslI	CAYNNNNRTG	2 cut(s)	368, 591
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	2 cut(s)	44, 62
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeII	GATC	3 cut(s)	186, 355, 688
NlaIII	CATG	6 cut(s)	223, 367, 590, 596, 893, 934
NlaIV	GGNNCC	5 cut(s)	42, 283, 632, 654, 912
NmuCI	GTSAC	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	891
NspI	RCATGY	2 cut(s)	367, 934
PciI	ACATGT	2 cut(s)	363, 930
PciSI	GCTCTTC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	53, 814
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	40, 761
PleI	GAGTC	3 cut(s)	73, 673, 697
PpsI	GAGTC	3 cut(s)	73, 673, 697
PscI	ACATGT	2 cut(s)	363, 930
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	5 cut(s)	42, 283, 632, 654, 912
PspPI	GGNCC	2 cut(s)	389, 719
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	2 cut(s)	654, 772
RsaNI	GTAC	2 cut(s)	653, 771
RseI	CAYNNNNRTG	2 cut(s)	368, 591
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	7 cut(s)	291, 309, 399, 411, 536, 734, 744
SatI	GCNGC	2 cut(s)	39, 760
Sau3AI	GATC	3 cut(s)	186, 355, 688
Sau96I	GGNCC	2 cut(s)	389, 719
SchI	GAGTC	3 cut(s)	73, 674, 697
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	300, 317
SfaNI	GCATC	3 cut(s)	100, 496, 876
SgrAI	CRCCGGYG	1 cut(s)	43
SinI	GGWCC	2 cut(s)	389, 719
SmiMI	CAYNNNNRTG	2 cut(s)	368, 591
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	7 cut(s)	190, 493, 552, 637, 741, 848, 920
SsiI	CCGC	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	2 cut(s)	31, 242
TaqI	TCGA	4 cut(s)	202, 303, 336, 817
TasI	AATT	7 cut(s)	190, 493, 552, 637, 741, 848, 920
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	53, 814
Tru1I	TTAA	7 cut(s)	291, 309, 399, 411, 536, 734, 744
Tru9I	TTAA	7 cut(s)	291, 309, 399, 411, 536, 734, 744
TscAI	CASTG	3 cut(s)	245, 451, 518
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	759
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	2 cut(s)	906, 933
TspGWI	ACGGA	2 cut(s)	385, 623
TspRI	CASTG	3 cut(s)	245, 451, 518
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	389, 719
XapI	RAATTY	3 cut(s)	552, 848, 920
XceI	RCATGY	2 cut(s)	367, 934
XmnI	GAANNNNTTC	1 cut(s)	791
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.