Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Forward (+)

64886242 .. 64889351

Gene Structure 3110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGAAGAAGAGAAAGCACAGCGAGAGTGAGGCTGCGCCGCAGAAGAAGGAGGAGGTGGTGGCTCCGGAGAGACCCAAACGAACGCTTCTGGGTTGGAAGGACAAGAAGGATGACCAACCCAAAGAAACTGACTCCACACCAGTCTTCAGGAACAAAGAGAAGGTCCTCGTTACTTGTTCTCGCCGGATTAATTACAGGTATCGACATTTGATGTTGAATGTGGTGGACCTATTGCCTCATTGTAAGAAGGACAACAAGGTCGAGTCGAAGTCGAGTAAAGGTGCAACCCTTAATGAGCTGGTTGAGCTAAAGAGTTGCTCTTCCTGTCTGTTTTTCGAGTGCAGGAAAGGAAAGGACCTTTATATGTGGATGGCAAAATCTCCCAGTGGACCATCTGTGAAATTCCTAGTGAATGCTGTGCACACAATGGAGGAATTGAAGCTTACGGGAAATCATCTAAAAGGGTCGCGTCCTTTGTTAACTTTTTCATCCAATTTTGATAAGGATCCTCACTGGAAACTTTTGAAAGAGATGATCACGCAGATATTTGGCACTCCAAAGGAGCACAGAAAATCTAAGCCTTATCATGATCATGTCTTTGTTTTCTCTATCGTTGATGACCACATATGGTTCAGAAATTATCAGATATCAGTTCCCCATAATGAATCAGATAAAATAGCTCGAGGTGGATTGGATAAAATGACCCTGATCGAGGTTGGTCCTCGATTTTGTTTGAATCCAATCAAGATATTTGCTGGCAGCTTTGGGGGCCCAACACTATATGAGAATCCATTTTACATATCGCCAAATCAGATTCGATCAATGCAGAAAAAGAAGAAGGCTGGGACTTTTGTTAAGAAAGTCAAAGCAAAGACAAGGAGAAAGATGCATGAGCTTGAAAATCCACTGGAGCAGGATGAGTTTGCTGAAATGTGGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

315

Amino Acids

36.61

Weight (kDa)

9.63

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	61 - 250	4.2e-44	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccII	CGCG	1 cut(s)	472
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	503, 516
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	715
AgsI	TTSAA	5 cut(s)	220, 442, 529, 739, 902
AluBI	AGCT	6 cut(s)	301, 310, 445, 683, 765, 898
AluI	AGCT	6 cut(s)	301, 310, 445, 683, 765, 898
Alw21I	GWGCWC	2 cut(s)	426, 570
Alw26I	GTCTC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	503, 516
Ama87I	CYCGRG	1 cut(s)	684
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	772
ApaI	GGGCCC	1 cut(s)	776
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	35, 762
ApoI	RAATTY	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AseI	ATTAAT	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	7 cut(s)	166, 229, 358, 392, 722, 772, 773
AvaI	CYCGRG	1 cut(s)	684
AvaII	GGWCC	5 cut(s)	166, 229, 358, 392, 722
BaeGI	GKGCMC	2 cut(s)	426, 776
BamHI	GGATCC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	2 cut(s)	426, 570
BbvI	GCAGC	2 cut(s)	22, 774
BccI	CCATC	2 cut(s)	367, 403
BclI	TGATCA	2 cut(s)	537, 592
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	3 cut(s)	36, 41, 763
BlsI	GCNGC	3 cut(s)	37, 42, 764
Bme18I	GGWCC	5 cut(s)	166, 229, 358, 392, 722
BmeT110I	CYCGRG	1 cut(s)	684
BmgT120I	GGNCC	7 cut(s)	166, 229, 358, 392, 722, 772, 773
BmiI	GGNNCC	4 cut(s)	66, 510, 773, 774
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	879
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	4 cut(s)	143, 387, 521, 915
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	67
BseGI	GGATG	4 cut(s)	118, 378, 491, 925
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseNI	ACTGG	4 cut(s)	143, 387, 521, 915
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	2 cut(s)	426, 776
BseXI	GCAGC	2 cut(s)	22, 774
BseYI	CCCAGC	1 cut(s)	845
BsgI	GTGCAG	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	774
BsiHKAI	GWGCWC	2 cut(s)	426, 570
BsiHKCI	CYCGRG	1 cut(s)	684
BsiSI	CCGG	2 cut(s)	68, 187
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	774
Bso31I	GGTCTC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	684
Bsp120I	GGGCCC	1 cut(s)	772
Bsp1286I	GDGCHC	3 cut(s)	426, 570, 776
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	508, 537, 592, 711, 821
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	774
BspEI	TCCGGA	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	472
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	4 cut(s)	66, 510, 773, 774
BspPI	GGATC	2 cut(s)	503, 516
BspQI	GCTCTTC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	67
BsrI	ACTGG	4 cut(s)	143, 387, 521, 915
BssMI	GATC	5 cut(s)	508, 537, 592, 711, 821
Bst6I	CTCTTC	2 cut(s)	5, 328
BstC8I	GCNNGC	1 cut(s)	760
BstDEI	CTNAG	1 cut(s)	579
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	4 cut(s)	118, 378, 491, 925
BstFNI	CGCG	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	5 cut(s)	511, 540, 595, 714, 824
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	5 cut(s)	508, 537, 592, 711, 821
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 771
BstSLI	GKGCMC	2 cut(s)	426, 776
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	22, 774
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	774
BtsCI	GGATG	4 cut(s)	118, 378, 491, 925
BtsIMutI	CAGTG	3 cut(s)	394, 514, 908
Cac8I	GCNNGC	1 cut(s)	760
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	7 cut(s)	166, 229, 358, 392, 722, 772, 773
CseI	GACGC	1 cut(s)	461
CviAII	CATG	3 cut(s)	590, 596, 893
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	5 cut(s)	510, 539, 594, 713, 823
DpnII	GATC	5 cut(s)	508, 537, 592, 711, 821
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	2 cut(s)	5, 328
EarI	CTCTTC	2 cut(s)	5, 328
Eco24I	GRGCYC	1 cut(s)	776
Eco31I	GGTCTC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	651
Eco47I	GGWCC	5 cut(s)	166, 229, 358, 392, 722
Eco57I	CTGAAG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	684
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	3 cut(s)	166, 358, 772
EcoRV	GATATC	1 cut(s)	651
EcoT22I	ATGCAT	1 cut(s)	894
EcoT38I	GRGCYC	1 cut(s)	776
FaeI	CATG	3 cut(s)	593, 599, 896
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	3 cut(s)	589, 595, 892
FauNDI	CATATG	1 cut(s)	629
FbaI	TGATCA	2 cut(s)	537, 592
Fnu4HI	GCNGC	3 cut(s)	36, 41, 763
FokI	GGATG	4 cut(s)	125, 385, 478, 932
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	3 cut(s)	36, 41, 763
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	36, 41, 763
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	1 cut(s)	932
HaeIII	GGCC	1 cut(s)	774
HapII	CCGG	2 cut(s)	68, 187
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	593, 599, 896
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	6 cut(s)	134, 266, 668, 739, 790, 817
HpaI	GTTAAC	1 cut(s)	483
HpaII	CCGG	2 cut(s)	68, 187
Hpy166II	GTNNAC	4 cut(s)	229, 392, 424, 483
Hpy188I	TCNGA	4 cut(s)	638, 648, 673, 816
Hpy188III	TCNNGA	4 cut(s)	68, 151, 590, 748
Hpy8I	GTNNAC	4 cut(s)	229, 392, 424, 483
HpyAV	CCTTC	7 cut(s)	43, 94, 103, 157, 244, 835, 934
HpyCH4V	TGCA	5 cut(s)	287, 345, 424, 829, 892
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 771
HpyF3I	CTNAG	1 cut(s)	579
Hsp92II	CATG	3 cut(s)	593, 599, 896
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	67
Ksp22I	TGATCA	2 cut(s)	537, 592
KspAI	GTTAAC	1 cut(s)	483
Kzo9I	GATC	5 cut(s)	508, 537, 592, 711, 821
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	70, 565, 913
Lsp1109I	GCAGC	2 cut(s)	22, 774
LweI	GCATC	1 cut(s)	879
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	5 cut(s)	510, 539, 594, 713, 823
MboI	GATC	5 cut(s)	508, 537, 592, 711, 821
MboII	GAAGA	6 cut(s)	19, 22, 58, 139, 315, 850
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	3 cut(s)	426, 570, 776
MluCI	AATT	5 cut(s)	193, 404, 437, 496, 640
MlyI	GAGTC	2 cut(s)	128, 275
MmeI	TCCRAC	1 cut(s)	77
Mph1103I	ATGCAT	1 cut(s)	894
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	4 cut(s)	192, 294, 482, 858
MslI	CAYNNNNRTG	1 cut(s)	594
MspI	CCGG	2 cut(s)	68, 187
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	2 cut(s)	307, 771
NdeI	CATATG	1 cut(s)	629
NdeII	GATC	5 cut(s)	508, 537, 592, 711, 821
NlaIII	CATG	3 cut(s)	593, 599, 896
NlaIV	GGNNCC	4 cut(s)	66, 510, 773, 774
NsiI	ATGCAT	1 cut(s)	894
PaeR7I	CTCGAG	1 cut(s)	684
PagI	TCATGA	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	328
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	4 cut(s)	668, 739, 790, 817
PkrI	GCNGC	3 cut(s)	37, 42, 764
PleI	GAGTC	2 cut(s)	128, 274
PpsI	GAGTC	2 cut(s)	128, 274
PpuMI	RGGWCCY	2 cut(s)	166, 358
PshBI	ATTAAT	1 cut(s)	192
Psp5II	RGGWCCY	2 cut(s)	166, 358
PspFI	CCCAGC	1 cut(s)	845
PspN4I	GGNNCC	4 cut(s)	66, 510, 773, 774
PspOMI	GGGCCC	1 cut(s)	772
PspPI	GGNCC	7 cut(s)	166, 229, 358, 392, 722, 772, 773
PspPPI	RGGWCCY	2 cut(s)	166, 358
PspXI	VCTCGAGB	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	594
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	4 cut(s)	192, 294, 482, 858
SatI	GCNGC	3 cut(s)	36, 41, 763
Sau3AI	GATC	5 cut(s)	508, 537, 592, 711, 821
Sau96I	GGNCC	7 cut(s)	166, 229, 358, 392, 722, 772, 773
SchI	GAGTC	2 cut(s)	128, 275
SduI	GDGCHC	3 cut(s)	426, 570, 776
SfaNI	GCATC	1 cut(s)	879
Sfr274I	CTCGAG	1 cut(s)	684
SinI	GGWCC	5 cut(s)	166, 229, 358, 392, 722
SlaI	CTCGAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	5 cut(s)	193, 404, 437, 496, 640
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	410
TaqI	TCGA	9 cut(s)	205, 264, 269, 275, 339, 685, 714, 727, 820
TasI	AATT	5 cut(s)	193, 404, 437, 496, 640
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	4 cut(s)	668, 739, 790, 817
Tru1I	TTAA	4 cut(s)	192, 294, 482, 858
Tru9I	TTAA	4 cut(s)	192, 294, 482, 858
TscAI	CASTG	3 cut(s)	394, 521, 915
TseI	GCWGC	2 cut(s)	35, 762
TspDTI	ATGAA	2 cut(s)	480, 681
TspRI	CASTG	3 cut(s)	394, 521, 915
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	5 cut(s)	166, 229, 358, 392, 722
VspI	ATTAAT	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	684
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.