Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Forward (+)

35196431 .. 35200199

Gene Structure 3769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1241800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAACCGAAGTTTGTTGATCCGAAAAGACAATCCAACCCCAAAACGCAAAACTTTACTTACCCGCCCGCACGCCGTTGCTTCTCTCTACTCGGTCGTCACTATCGTCCAAAAAATAATGGGGAAGAAGAGAAAGCAGAGCGAGGCCGCGGTGCCAGAAAAGAAGGAGGAGGAGGTTGCTCCGGAGAGGCCGAAGCGAACGCTTTCGGGTTGGAAGGAGAAGAAGGACGATGATGAAGTGAAACCGATTGAATCGACGGGAGTGTTTAGGAACAAAGAGAAGGTCTTGGTTACTTGCTCTCGTCGCATTAGTTACAGGTACCGACACCTGATGTTGAATGTGGTGGACCTGATGCCTCACTGTAAGAAGGACAATAAGGTGGATTCTAAATCAAGTAACGGCGTAACCCTTAACGAGCTGGTCGAGCTAAAGAATTGTTCTTCCTGTATGTTTTTTGAGTGCAGGAAGGGGAAAGATCTGTATCTGTGGATGTCAAAGTGCCCCAATGGGCCATCTGTGAAATTCTTAGTCAATGCTGTGCACACGATGGAGGAATTGAAGCTTACAGGAAATCATCTAAAAGGGTCACGGCCTATTTTGACTTTTTCATCCAACTTTGATAAAGATGCCCACTGGAAGCTTCTGAAGGAGATGATCACTCAGATATTTGGCATTCCCAAGGAGCACAGAAAATCTAAACCCTATCATGATCACGTCTTTGTATTCTCTATCGTTGATGACCACATTTGGTTCCGAAACTATCAGATATCTGTTCCTCATAACGAATCGGATAAAATAGCTCGAGGAGGCTTAGATAAAATGACCCTTGTTGAGGTTGGACCACGATTTTGTTTGAATCCGATCAAGATATTTGGTGGCAGCTTTGGAGGTCCAACATTATATGAGAATCCGTTTTACATATCACCCAATCAGATTCGAACATTGGAGAAAAAGAAGAAGGCTGGGACCTTTGTCAAGAAAGTCAAAGCAAAGACGAGGAGAAAAATGCATGAGCTTGAAAATCCACTGGAGGCTGATGAGTTTTCTGAGATGTGGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

355

Amino Acids

40.99

Weight (kDa)

9.67

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	100 - 289	1.4e-45	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	2 cut(s)	151, 318
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	4 cut(s)	64, 68, 147, 149
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	665
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	832
AgsI	TTSAA	5 cut(s)	251, 337, 559, 856, 1019
AjiI	CACGTC	1 cut(s)	715
AluBI	AGCT	7 cut(s)	418, 427, 562, 640, 800, 882, 1015
AluI	AGCT	7 cut(s)	418, 427, 562, 640, 800, 882, 1015
Alw21I	GWGCWC	2 cut(s)	543, 687
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	801
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	4 cut(s)	144, 188, 509, 590
ApaLI	GTGCAC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	879
ApoI	RAATTY	1 cut(s)	521
ArsI	GACNNNNNNTTYG	4 cut(s)	267, 299, 831, 863
Asp700I	GAANNNNTTC	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	318
AspS9I	GGNCC	5 cut(s)	346, 509, 839, 890, 966
AsuHPI	GGTGA	1 cut(s)	915
AsuII	TTCGAA	1 cut(s)	937
AvaI	CYCGRG	1 cut(s)	801
AvaII	GGWCC	4 cut(s)	346, 839, 890, 966
BaeGI	GKGCMC	2 cut(s)	503, 543
BanI	GGYRCC	2 cut(s)	151, 318
Bbv12I	GWGCWC	2 cut(s)	543, 687
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	2 cut(s)	520, 541
BceAI	ACGGC	3 cut(s)	59, 415, 605
BclI	TGATCA	2 cut(s)	654, 709
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	2 cut(s)	147, 880
BlsI	GCNGC	2 cut(s)	148, 881
Bme18I	GGWCC	4 cut(s)	346, 839, 890, 966
BmeT110I	CYCGRG	1 cut(s)	801
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	5 cut(s)	346, 509, 839, 890, 966
BmiI	GGNNCC	4 cut(s)	153, 320, 752, 967
BmsI	GCATC	2 cut(s)	342, 616
BoxI	GACNNNNGTC	1 cut(s)	971
BpmI	CTGGAG	1 cut(s)	1049
Bpu14I	TTCGAA	1 cut(s)	937
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	147, 678
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	832
Bse1I	ACTGG	2 cut(s)	638, 1032
Bse8I	GATNNNNATC	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	147, 678
BseGI	GGATG	2 cut(s)	495, 608
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	832
BseMII	CTCAG	2 cut(s)	674, 1038
BseNI	ACTGG	2 cut(s)	638, 1032
BseRI	GAGGAG	4 cut(s)	182, 185, 819, 1012
BseSI	GKGCMC	2 cut(s)	503, 543
BseXI	GCAGC	1 cut(s)	891
BseYI	CCCAGC	1 cut(s)	962
BsgI	GTGCAG	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	146, 190, 511, 592
BshNI	GGYRCC	2 cut(s)	151, 318
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	543, 687
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	979
BslI	CCNNNNNNNGG	1 cut(s)	832
BsmFI	GGGAC	1 cut(s)	979
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	4 cut(s)	146, 190, 511, 592
BsoBI	CYCGRG	1 cut(s)	801
Bsp119I	TTCGAA	1 cut(s)	937
Bsp1286I	GDGCHC	3 cut(s)	503, 543, 687
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	18, 475, 654, 709, 861
BspACI	CCGC	4 cut(s)	64, 68, 147, 149
BspANI	GGCC	4 cut(s)	146, 190, 511, 592
BspCNI	CTCAG	2 cut(s)	673, 1039
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	4 cut(s)	153, 320, 752, 967
BspPI	GGATC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	937
BspT107I	GGYRCC	2 cut(s)	151, 318
BsrI	ACTGG	2 cut(s)	638, 1032
BssECI	CCNNGG	2 cut(s)	147, 678
BssMI	GATC	5 cut(s)	18, 475, 654, 709, 861
BssT1I	CCWWGG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	68, 72
BstDEI	CTNAG	4 cut(s)	526, 660, 811, 1047
BstDSI	CCRYGG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	2 cut(s)	495, 608
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	5 cut(s)	21, 478, 657, 712, 864
BstMBI	GATC	5 cut(s)	18, 475, 654, 709, 861
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 424
BstPAI	GACNNNNGTC	1 cut(s)	971
BstSLI	GKGCMC	2 cut(s)	503, 543
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	4 cut(s)	146, 190, 511, 592
BtgI	CCRYGG	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	495, 608
BtsIMutI	CAGTG	3 cut(s)	358, 631, 1025
Cac8I	GCNNGC	2 cut(s)	68, 72
CciI	TCATGA	1 cut(s)	706
Cfr13I	GGNCC	5 cut(s)	346, 509, 839, 890, 966
Cfr42I	CCGCGG	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	707, 1010
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	526, 660, 811, 1047
DpnI	GATC	5 cut(s)	20, 477, 656, 711, 863
DpnII	GATC	5 cut(s)	18, 475, 654, 709, 861
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	678
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	4 cut(s)	346, 839, 890, 966
Eco57I	CTGAAG	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	801
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	966
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	1 cut(s)	678
EcoT22I	ATGCAT	1 cut(s)	1011
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	2 cut(s)	710, 1013
FaiI	YATR	7 cut(s)	449, 708, 780, 901, 903, 920, 1011
FaqI	GGGAC	1 cut(s)	979
FatI	CATG	2 cut(s)	706, 1009
FauI	CCCGC	2 cut(s)	71, 75
FbaI	TGATCA	2 cut(s)	654, 709
Fnu4HI	GCNGC	2 cut(s)	147, 880
FokI	GGATG	2 cut(s)	502, 595
Fsp4HI	GCNGC	2 cut(s)	147, 880
GluI	GCNGC	2 cut(s)	147, 880
GsaI	CCCAGC	1 cut(s)	966
GsuI	CTGGAG	1 cut(s)	1049
HaeIII	GGCC	4 cut(s)	146, 190, 511, 592
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	2 cut(s)	710, 1013
HindIII	AAGCTT	2 cut(s)	560, 638
HinfI	GANTC	6 cut(s)	251, 383, 785, 856, 907, 934
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	915
Hpy166II	GTNNAC	2 cut(s)	346, 541
Hpy188I	TCNGA	9 cut(s)	23, 645, 663, 755, 765, 790, 861, 933, 1048
Hpy188III	TCNNGA	4 cut(s)	182, 707, 865, 976
Hpy8I	GTNNAC	2 cut(s)	346, 541
Hpy99I	CGWCG	2 cut(s)	259, 306
HpyAV	CCTTC	9 cut(s)	157, 208, 217, 274, 361, 460, 640, 952, 1051
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	3 cut(s)	462, 541, 1009
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 424
HpyF3I	CTNAG	4 cut(s)	526, 660, 811, 1047
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	2 cut(s)	710, 1013
Kpn2I	TCCGGA	1 cut(s)	181
KpnI	GGTACC	1 cut(s)	322
Ksp22I	TGATCA	2 cut(s)	654, 709
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	5 cut(s)	18, 475, 654, 709, 861
LmnI	GCTCC	2 cut(s)	184, 682
Lsp1109I	GCAGC	1 cut(s)	891
LweI	GCATC	2 cut(s)	342, 616
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	6 cut(s)	97, 289, 311, 395, 403, 585
MalI	GATC	5 cut(s)	20, 477, 656, 711, 863
MboI	GATC	5 cut(s)	18, 475, 654, 709, 861
MboII	GAAGA	5 cut(s)	136, 139, 232, 432, 967
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	3 cut(s)	503, 543, 687
MluCI	AATT	3 cut(s)	433, 521, 554
MmeI	TCCRAC	5 cut(s)	59, 191, 636, 817, 917
Mph1103I	ATGCAT	1 cut(s)	1011
MroI	TCCGGA	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	672
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	303, 424
NdeII	GATC	5 cut(s)	18, 475, 654, 709, 861
NlaIII	CATG	2 cut(s)	710, 1013
NlaIV	GGNNCC	4 cut(s)	153, 320, 752, 967
NmuCI	GTSAC	2 cut(s)	97, 585
NsiI	ATGCAT	1 cut(s)	1011
NspV	TTCGAA	1 cut(s)	937
PaeR7I	CTCGAG	1 cut(s)	801
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 420
PctI	GAATGC	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	6 cut(s)	251, 383, 785, 856, 907, 934
PkrI	GCNGC	2 cut(s)	148, 881
PpuMI	RGGWCCY	1 cut(s)	966
PshAI	GACNNNNGTC	1 cut(s)	971
Psp5II	RGGWCCY	1 cut(s)	966
PspFI	CCCAGC	1 cut(s)	962
PspN4I	GGNNCC	4 cut(s)	153, 320, 752, 967
PspPI	GGNCC	5 cut(s)	346, 509, 839, 890, 966
PspPPI	RGGWCCY	1 cut(s)	966
PspXI	VCTCGAGB	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacII	CCGCGG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	147, 880
Sau3AI	GATC	5 cut(s)	18, 475, 654, 709, 861
Sau96I	GGNCC	5 cut(s)	346, 509, 839, 890, 966
SduI	GDGCHC	3 cut(s)	503, 543, 687
SfaNI	GCATC	2 cut(s)	342, 616
Sfr274I	CTCGAG	1 cut(s)	801
Sfr303I	CCGCGG	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	937
SgrBI	CCGCGG	1 cut(s)	150
SinI	GGWCC	4 cut(s)	346, 839, 890, 966
SlaI	CTCGAG	1 cut(s)	801
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	3 cut(s)	433, 521, 554
SsiI	CCGC	4 cut(s)	64, 68, 147, 149
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	4 cut(s)	254, 423, 802, 937
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	433, 521, 554
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	6 cut(s)	251, 383, 785, 856, 907, 934
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	365, 638, 1032
TseFI	GTSAC	2 cut(s)	97, 585
TseI	GCWGC	1 cut(s)	879
Tsp45I	GTSAC	2 cut(s)	97, 585
TspDTI	ATGAA	3 cut(s)	17, 249, 597
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	3 cut(s)	365, 638, 1032
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	4 cut(s)	346, 839, 890, 966
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	521
XhoI	CTCGAG	1 cut(s)	801
XmnI	GAANNNNTTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.