Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018308

Physical Location & Seq

Genomic Coordinates Forward (+)

19747847 .. 19748383

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGCTCAGAAGAAGATGATGCGATTAGTCTCATCAGCGTTCTTGGTCTCGCTGTTTTCATCGGTCTCTGCATCTTGCTCGTTGTTCTCATTGCAACCTCAGCTCTCATTCTTGTAATCTACGTCATCATCGATTGCATTCTGCGACCATTCTTAGGAACATGTCTCGACCTAGATCTCGAAATCGGAGTACAAAGAGGCCAACAACGTGCTAGAATCGTTACCTACCACACAATCATCTCGACCGGTCTACGGTTACCAGATTTCGAGAGAGAAGGAAAAAAGCGCGGGCTGAAACAAAGCGTGATCGAAACCCTACTACCGAAGTTGCTTGTTGGACAAGGCAACCATGAGGAGGATGAAGAAAAGTCACTAGAATCAAGAGAATGCGCGATTTGTCTCAGTGGTTATGTCGTTAATGAAGAATGCAGAGTATTTCCTGTTTGCAGACATATCTATCATGCGCTTTGTATCGACGCTTGGCTTAAGAATCATCTCACATGTCCTACTTGTCGTAAAGATCTACCAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

178

Amino Acids

19.89

Weight (kDa)

5.37

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	129 - 172	3.2e-12	Ring finger domain
zf-RING_11	PF17123	129 - 158	2.9e-07	RING-like zinc finger
zf-rbx1	PF12678	142 - 172	1e-05	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53010
rosa_chinensis	RchiOBHm_Chr4g0446061
rosa_multiflora	Rmu_co8105996.1_g000001 Rmu_sc0007511.1_g000003
rosa_roxburghii	Rroxscaffold_5G00386470
rosa_rugosa	Rorug04G0366900
rosa_samantha	Rh4AG429000 Rh4BG438500 Rh4CG455800
rosa_wichuraiana	Rw4G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	2 cut(s)	288, 392
AciI	CCGC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	3 cut(s)	155, 252, 355
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	2 cut(s)	161, 500
AgeI	ACCGGT	1 cut(s)	245
AluBI	AGCT	2 cut(s)	6, 104
AluI	AGCT	2 cut(s)	6, 104
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	5 cut(s)	35, 53, 71, 170, 404
AoxI	GGCC	1 cut(s)	199
AsiGI	ACCGGT	1 cut(s)	245
AspLEI	GCGC	3 cut(s)	288, 392, 466
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BcoDI	GTCTC	5 cut(s)	35, 53, 71, 170, 404
BfaI	CTAG	3 cut(s)	173, 213, 374
BfrI	CTTAAG	1 cut(s)	485
BglII	AGATCT	2 cut(s)	175, 520
BmsI	GCATC	2 cut(s)	10, 81
Bpu10I	CCTNAGC	1 cut(s)	100
Bsa29I	ATCGAT	1 cut(s)	132
BsaI	GGTCTC	2 cut(s)	53, 71
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 252, 355
Bse118I	RCCGGY	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	3 cut(s)	155, 252, 355
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	3 cut(s)	21, 114, 415
BseRI	GAGGAG	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	288, 392
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	3 cut(s)	155, 252, 355
BsmAI	GTCTC	5 cut(s)	35, 53, 71, 170, 404
BsmI	GAATGC	3 cut(s)	138, 392, 431
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	2 cut(s)	53, 71
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	175, 306, 520
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	20, 113, 414
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	288, 392
BspHI	TCATGA	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	2 cut(s)	53, 71
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssMI	GATC	3 cut(s)	175, 306, 520
Bst4CI	ACNGT	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	4 cut(s)	7, 100, 154, 401
BstEII	GGTNACC	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	288, 392
BstHHI	GCGC	3 cut(s)	288, 392, 466
BstKTI	GATC	3 cut(s)	178, 309, 523
BstMAI	GTCTC	5 cut(s)	35, 53, 71, 170, 404
BstMBI	GATC	3 cut(s)	175, 306, 520
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	2 cut(s)	165, 504
BstPI	GGTNACC	1 cut(s)	255
BstUI	CGCG	2 cut(s)	288, 392
BstX2I	RGATCY	2 cut(s)	175, 520
BstYI	RGATCY	2 cut(s)	175, 520
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	290
CciI	TCATGA	1 cut(s)	533
CfoI	GCGC	3 cut(s)	288, 392, 466
Cfr10I	RCCGGY	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	191
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	5 cut(s)	162, 350, 461, 501, 534
CviJI	RGCY	5 cut(s)	6, 104, 201, 292, 484
CviKI_1	RGCY	5 cut(s)	6, 104, 201, 292, 484
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	4 cut(s)	7, 100, 154, 401
DpnI	GATC	3 cut(s)	177, 308, 522
DpnII	GATC	3 cut(s)	175, 306, 520
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	2 cut(s)	53, 71
Eco53kI	GAGCTC	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	6
EcoO65I	GGTNACC	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	5 cut(s)	165, 353, 464, 504, 537
FaiI	YATR	7 cut(s)	163, 351, 411, 453, 462, 502, 535
FatI	CATG	5 cut(s)	161, 349, 460, 500, 533
FauI	CCCGC	1 cut(s)	281
FblI	GTMKAC	1 cut(s)	250
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	3 cut(s)	173, 213, 374
GlaI	GCGC	3 cut(s)	287, 391, 465
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	3 cut(s)	288, 392, 466
Hin1II	CATG	5 cut(s)	165, 353, 464, 504, 537
Hin6I	GCGC	3 cut(s)	286, 390, 464
HinP1I	GCGC	3 cut(s)	286, 390, 464
HinfI	GANTC	4 cut(s)	216, 377, 490, 530
HpaII	CCGG	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	10, 188
Hpy188III	TCNNGA	6 cut(s)	167, 179, 241, 268, 381, 534
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	2 cut(s)	123, 208
HpyCH4V	TGCA	5 cut(s)	72, 95, 138, 429, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	4 cut(s)	7, 100, 154, 401
HpySE526I	ACGT	2 cut(s)	123, 208
Hsp92II	CATG	5 cut(s)	165, 353, 464, 504, 537
HspAI	GCGC	3 cut(s)	286, 390, 464
Kzo9I	GATC	3 cut(s)	175, 306, 520
LpnPI	CCDG	3 cut(s)	259, 273, 453
LweI	GCATC	2 cut(s)	10, 81
MaeI	CTAG	3 cut(s)	173, 213, 374
MaeII	ACGT	2 cut(s)	123, 208
MaeIII	GTNAC	3 cut(s)	220, 255, 369
MalI	GATC	3 cut(s)	177, 308, 522
MboI	GATC	3 cut(s)	175, 306, 520
MboII	GAAGA	4 cut(s)	23, 26, 374, 434
MflI	RGATCY	2 cut(s)	175, 520
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	4 cut(s)	109, 191, 346, 349
MseI	TTAA	2 cut(s)	417, 486
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	1 cut(s)	246
Mva1269I	GAATGC	3 cut(s)	138, 392, 431
MvnI	CGCG	2 cut(s)	288, 392
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	3 cut(s)	175, 306, 520
NlaIII	CATG	5 cut(s)	165, 353, 464, 504, 537
NmuCI	GTSAC	1 cut(s)	369
NspI	RCATGY	2 cut(s)	165, 504
PagI	TCATGA	1 cut(s)	533
PciI	ACATGT	2 cut(s)	161, 500
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	3 cut(s)	138, 392, 431
PfeI	GAWTC	4 cut(s)	216, 377, 490, 530
PinAI	ACCGGT	1 cut(s)	245
PscI	ACATGT	2 cut(s)	161, 500
Psp124BI	GAGCTC	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	255
PsuI	RGATCY	2 cut(s)	175, 520
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	417, 486
Sau3AI	GATC	3 cut(s)	175, 306, 520
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	8, 101, 106, 126, 174, 211, 227
SfaNI	GCATC	2 cut(s)	10, 81
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	3 cut(s)	173, 213, 374
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	2 cut(s)	126, 211
TaqI	TCGA	7 cut(s)	132, 168, 180, 242, 267, 309, 474
TaqII	GACCGA	1 cut(s)	53
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	216, 377, 490, 530
Tru1I	TTAA	2 cut(s)	417, 486
Tru9I	TTAA	2 cut(s)	417, 486
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	3 cut(s)	49, 375, 435
TspRI	CASTG	1 cut(s)	409
Vha464I	CTTAAG	1 cut(s)	485
XceI	RCATGY	2 cut(s)	165, 504
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	3 cut(s)	173, 213, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.