Rorug04G0366900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011145
Physical Location & Seq
Reverse (-)
53832097 .. 53834797
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0366900.1

Sequence Viewer

Length: 1176 bp
ATGCTAATAGAGTCTACAGAGGAAATGCAGGGTTCAAAGATGAGTTTGTATGTGAAAGCCTTGGAGGAAGAGAGGCAAAAGATTCAAGTTTTCCAAAGAGAGCTGCCTCTCTGCTTGGAGCTTGTCACTCAAGCTATTGAGAGGTGTAAGCAGGAGCTGTCGGATAATAGCATAGAGTACAGGCATGGGCAATCCGAGTGTTCGGAGCAGACTTCAAGTGAGGGACATGTGTTTGAGGAGTTTATACCACTGAAAAGGAGTTCATGCTCTGATAGTGATAATGATGAGGAGCTAGAAGAGTCTGATCATCAGCAGATTAAGATTGATGACAAGGATAAGAGTAACAGTGGTGACAAGAAGAAATCAGACTGGCTTAGATCTGTTCAGCTTTGGAATACGACCCCAGATTTACCCCAGAAAGAGGAATTGCCTAGAAAGGCTTTAGTGGTGGAGGTTAAGAGAAATGGAGGTGCTTTTCAGCCTTTCCAAAGGGAGAAAGGCATTGGGAAGACTAATGGGGCAGTGGCGAAGTCGCCTGCTTCCGCTCCGGCCACTAGCTCAACCGCTGACACCGTCAGCGGTGGCAGCGGCGGTGGAAACAGCAAGAAGGAAGATAAGGAGGGGCAGAGGAAACAGAGGCGGAACTGGTCGCCGGAGTTGCATCGCCGGTTCTTGCATGCCCTTCAGCAGCTTGGTGGCTCGCACATTGCTACACCTAAGCAAATTAGAGAGCTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTCTACACACTCGAAGGCCAACCCCAACAATCCATAACAACAACAACAACAGCAATGCACAAGCACCACAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCCCAAGACTACAATGCAGCAGTCGCAGCTGCAAACACAGCTCCAGGCGAAGCAGCCAGGGTTGCTGTTGCAGCCAATGGAATATATGCACCAGTGGCTTCAACACCTTCTACTGTCACACAGGTGTCACCATCAGCAATGCATAGACCGCGATCAAAGAAACCAGAGCCCTCTTCTCATTCGGAAGAAAGAGCCAGCCATAGCGGTGAAGGTCGCGGTCACTCCAACTCCACTGCTACATCACCCTCCTCCACTCACACCCCTGCCTCCCCTCCTGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

391

Amino Acids

42.88

Weight (kDa)

7.25

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 8 - 53 5.6e-15 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 213 - 264 2.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 886
AccBSI CCGCTC 1 cut(s) 545
AccI GTMKAC 2 cut(s) 14, 793
AccII CGCG 2 cut(s) 1042, 1107
AciI CCGC 9 cut(s) 543, 564, 579, 588, 591, 640, 1040, 1095, 1107
AcoI YGGCCR 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 668
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 4 cut(s) 36, 86, 216, 993
AjnI CCWGG 2 cut(s) 934, 947
AleI CACNNNNGTG 1 cut(s) 1013
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 549, 806
ApeKI GCWGC 8 cut(s) 103, 585, 688, 908, 917, 920, 944, 962
AsuHPI GGTGA 4 cut(s) 362, 1011, 1109, 1125
BanI GGYRCC 1 cut(s) 886
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 1 cut(s) 515
BbvI GCAGC 8 cut(s) 90, 597, 700, 907, 920, 929, 956, 974
BccI CCATC 2 cut(s) 740, 1030
BciT130I CCWGG 2 cut(s) 936, 949
BclI TGATCA 1 cut(s) 304
BfaI CTAG 3 cut(s) 293, 432, 555
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 377
BisI GCNGC 9 cut(s) 104, 586, 589, 689, 909, 918, 921, 945, 963
BlsI GCNGC 9 cut(s) 105, 587, 590, 690, 910, 919, 922, 946, 964
Bme1390I CCNGG 2 cut(s) 936, 949
BmiI GGNNCC 1 cut(s) 888
BmrFI CCNGG 2 cut(s) 936, 949
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 918
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 60, 948
BsaXI ACNNNNNCTCC 2 cut(s) 1103, 1133
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 666
Bse1I ACTGG 3 cut(s) 374, 650, 983
Bse3DI GCAATG 3 cut(s) 705, 850, 1035
BseBI CCWGG 2 cut(s) 936, 949
BseDI CCNNGG 2 cut(s) 60, 948
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 3 cut(s) 705, 850, 1035
BseNI ACTGG 3 cut(s) 374, 650, 983
BseRI GAGGAG 3 cut(s) 251, 302, 1129
BseXI GCAGC 8 cut(s) 90, 597, 700, 907, 920, 929, 956, 974
Bsh1236I CGCG 2 cut(s) 1042, 1107
BshFI GGCC 2 cut(s) 551, 808
BshNI GGYRCC 1 cut(s) 886
BsiSI CCGG 3 cut(s) 548, 653, 667
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 551, 808
Bsp1286I GDGCHC 1 cut(s) 1062
Bsp143I GATC 3 cut(s) 304, 377, 1043
BspACI CCGC 9 cut(s) 543, 564, 579, 588, 591, 640, 1040, 1095, 1107
BspANI GGCC 2 cut(s) 551, 808
BspFNI CGCG 2 cut(s) 1042, 1107
BspLI GGNNCC 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 886
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 3 cut(s) 705, 850, 1035
BsrFI RCCGGY 1 cut(s) 666
BsrI ACTGG 3 cut(s) 374, 650, 983
BssAI RCCGGY 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 60, 948
BssMI GATC 3 cut(s) 304, 377, 1043
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 936, 949
Bst4CI ACNGT 3 cut(s) 347, 574, 1006
Bst6I CTCTTC 3 cut(s) 63, 291, 1069
BstC8I GCNNGC 4 cut(s) 537, 678, 701, 1087
BstDEI CTNAG 2 cut(s) 374, 717
BstFNI CGCG 2 cut(s) 1042, 1107
BstKTI GATC 3 cut(s) 307, 380, 1046
BstMBI GATC 3 cut(s) 304, 377, 1043
BstMWI GCNNNNNNNGC 9 cut(s) 585, 658, 914, 917, 929, 953, 962, 986, 1039
BstNI CCWGG 2 cut(s) 936, 949
BstNSI RCATGY 2 cut(s) 230, 680
BstSCI CCNGG 2 cut(s) 934, 947
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 2 cut(s) 1042, 1107
BstV1I GCAGC 8 cut(s) 90, 597, 700, 907, 920, 929, 956, 974
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 2 cut(s) 551, 808
BtgZI GCGATG 1 cut(s) 647
BtsI GCAGTG 2 cut(s) 528, 1122
BtsIMutI CAGTG 5 cut(s) 248, 352, 528, 990, 1122
Cac8I GCNNGC 4 cut(s) 537, 678, 701, 1087
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 666
Csp6I GTAC 1 cut(s) 178
CviAII CATG 4 cut(s) 185, 227, 264, 677
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 374, 717
DpnI GATC 3 cut(s) 306, 379, 1045
DpnII GATC 3 cut(s) 304, 377, 1043
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 3 cut(s) 63, 291, 1069
EarI CTCTTC 3 cut(s) 63, 291, 1069
EciI GGCGGA 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 1062
Eco57I CTGAAG 1 cut(s) 668
EcoRII CCWGG 2 cut(s) 934, 947
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 1035
EcoT38I GRGCYC 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 188, 230, 267, 680
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 184, 226, 263, 676
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 2 cut(s) 14, 793
Fnu4HI GCNGC 9 cut(s) 104, 586, 589, 689, 909, 918, 921, 945, 963
FriOI GRGCYC 1 cut(s) 1062
Fsp4HI GCNGC 9 cut(s) 104, 586, 589, 689, 909, 918, 921, 945, 963
FspBI CTAG 3 cut(s) 293, 432, 555
GluI GCNGC 9 cut(s) 104, 586, 589, 689, 909, 918, 921, 945, 963
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 2 cut(s) 551, 808
HapII CCGG 3 cut(s) 548, 653, 667
Hin1II CATG 4 cut(s) 188, 230, 267, 680
HinfI GANTC 3 cut(s) 11, 82, 299
HpaII CCGG 3 cut(s) 548, 653, 667
HphI GGTGA 4 cut(s) 362, 1011, 1109, 1125
Hpy166II GTNNAC 2 cut(s) 15, 794
Hpy188I TCNGA 7 cut(s) 163, 196, 205, 271, 304, 367, 1075
Hpy8I GTNNAC 2 cut(s) 15, 794
HpyAV CCTTC 6 cut(s) 601, 692, 733, 798, 1008, 1094
HpyCH4III ACNGT 3 cut(s) 347, 574, 1006
HpyCH4V TGCA 9 cut(s) 28, 661, 676, 848, 908, 923, 962, 980, 1033
HpyF10VI GCNNNNNNNGC 9 cut(s) 585, 658, 914, 917, 929, 953, 962, 986, 1039
HpyF3I CTNAG 2 cut(s) 374, 717
Hsp92II CATG 4 cut(s) 188, 230, 267, 680
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 304, 377, 1043
LmnI GCTCC 6 cut(s) 118, 154, 205, 289, 550, 937
Lsp1109I GCAGC 8 cut(s) 90, 597, 700, 907, 920, 929, 956, 974
LweI GCATC 1 cut(s) 670
MaeI CTAG 3 cut(s) 293, 432, 555
MaeIII GTNAC 6 cut(s) 124, 341, 350, 1006, 1017, 1109
MalI GATC 3 cut(s) 306, 379, 1045
MbiI CCGCTC 1 cut(s) 545
MboI GATC 3 cut(s) 304, 377, 1043
MboII GAAGA 7 cut(s) 80, 308, 370, 520, 623, 1056, 1088
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 1062
MluCI AATT 3 cut(s) 425, 723, 860
MlyI GAGTC 2 cut(s) 20, 308
MmeI TCCRAC 2 cut(s) 141, 1140
Mph1103I ATGCAT 1 cut(s) 1035
MseI TTAA 3 cut(s) 318, 456, 1174
MslI CAYNNNNRTG 3 cut(s) 884, 1013, 1095
MspA1I CMGCKG 4 cut(s) 566, 579, 588, 920
MspI CCGG 3 cut(s) 548, 653, 667
MspR9I CCNGG 2 cut(s) 936, 949
MvaI CCWGG 2 cut(s) 936, 949
MvnI CGCG 2 cut(s) 1042, 1107
MwoI GCNNNNNNNGC 9 cut(s) 585, 658, 914, 917, 929, 953, 962, 986, 1039
NdeII GATC 3 cut(s) 304, 377, 1043
NlaIII CATG 4 cut(s) 188, 230, 267, 680
NlaIV GGNNCC 1 cut(s) 888
NmuCI GTSAC 5 cut(s) 124, 350, 1006, 1017, 1109
NsiI ATGCAT 1 cut(s) 1035
NspI RCATGY 2 cut(s) 230, 680
OliI CACNNNNGTG 1 cut(s) 1013
PaeI GCATGC 1 cut(s) 680
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 572
PkrI GCNGC 9 cut(s) 105, 587, 590, 690, 910, 919, 922, 946, 964
PleI GAGTC 2 cut(s) 19, 307
PpsI GAGTC 2 cut(s) 19, 307
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 934, 947
PspGI CCWGG 2 cut(s) 934, 947
PspN4I GGNNCC 1 cut(s) 888
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 3 cut(s) 884, 1013, 1095
SaqAI TTAA 3 cut(s) 318, 456, 1174
SatI GCNGC 9 cut(s) 104, 586, 589, 689, 909, 918, 921, 945, 963
Sau3AI GATC 3 cut(s) 304, 377, 1043
SchI GAGTC 2 cut(s) 20, 308
ScrFI CCNGG 2 cut(s) 936, 949
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 3 cut(s) 884, 1013, 1095
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 680
Sse9I AATT 3 cut(s) 425, 723, 860
SsiI CCGC 9 cut(s) 543, 564, 579, 588, 591, 640, 1040, 1095, 1107
SspMI CTAG 3 cut(s) 293, 432, 555
StyD4I CCNGG 2 cut(s) 934, 947
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 347, 574, 1006
TaqI TCGA 1 cut(s) 802
TasI AATT 3 cut(s) 425, 723, 860
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 318, 456, 1174
Tru9I TTAA 3 cut(s) 318, 456, 1174
TscAI CASTG 5 cut(s) 255, 352, 528, 990, 1129
TseFI GTSAC 5 cut(s) 124, 350, 1006, 1017, 1109
TseI GCWGC 8 cut(s) 103, 585, 688, 908, 917, 920, 944, 962
Tsp45I GTSAC 5 cut(s) 124, 350, 1006, 1017, 1109
TspDTI ATGAA 3 cut(s) 252, 752, 777
TspRI CASTG 5 cut(s) 255, 352, 528, 990, 1129
Tth111I GACNNNGTC 1 cut(s) 572
XceI RCATGY 2 cut(s) 230, 680
XmiI GTMKAC 2 cut(s) 14, 793
XspI CTAG 3 cut(s) 293, 432, 555
Zsp2I ATGCAT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.