Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02150 AT2G02150 |
| fragaria_vesca | FvH4_4g36310 FvH4_4g36310 |
| malus_domestica | MD13G1010200.v1.1 |
| prunus_persica | Prupe.1G342600_v2.0.a1 |
| pyrus_communis | pycom13g00850 |
| rosa_chinensis | RchiOBHm_Chr4g0446071 |
| rosa_laevigata | RLG00000005694 |
| rosa_multiflora | Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00386480 |
| rosa_rugosa | Rorug04G0366900 Rorug04G0367000 Rorug04G0367100 |
| rosa_samantha | Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900 |
| rosa_wichuraiana | Rw4G036670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 45, 209, 579 |
| AcuI | CTGAAG | 2 cut(s) | 425, 434 |
| AcyI | GRCGYC | 1 cut(s) | 53 |
| AfaI | GTAC | 2 cut(s) | 159, 411 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 371, 372 |
| AgeI | ACCGGT | 1 cut(s) | 315 |
| AgsI | TTSAA | 2 cut(s) | 43, 506 |
| AluBI | AGCT | 1 cut(s) | 418 |
| AluI | AGCT | 1 cut(s) | 418 |
| Alw26I | GTCTC | 2 cut(s) | 324, 452 |
| ApoI | RAATTY | 3 cut(s) | 45, 209, 579 |
| AsiGI | ACCGGT | 1 cut(s) | 315 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 579 |
| AsuHPI | GGTGA | 2 cut(s) | 505, 627 |
| AsuII | TTCGAA | 2 cut(s) | 110, 142 |
| BcoDI | GTCTC | 2 cut(s) | 324, 452 |
| BfaI | CTAG | 1 cut(s) | 26 |
| BfmI | CTRYAG | 1 cut(s) | 250 |
| Bpu14I | TTCGAA | 2 cut(s) | 110, 142 |
| BsaAI | YACGTR | 1 cut(s) | 157 |
| BsaHI | GRCGYC | 1 cut(s) | 53 |
| BsaI | GGTCTC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 2 cut(s) | 72, 175 |
| BsaWI | WCCGGW | 1 cut(s) | 315 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 291, 321, 421, 451 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 371, 372 |
| Bse118I | RCCGGY | 1 cut(s) | 315 |
| Bse3DI | GCAATG | 1 cut(s) | 470 |
| BseDI | CCNNGG | 2 cut(s) | 72, 175 |
| BseGI | GGATG | 2 cut(s) | 191, 583 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 371, 372 |
| BseMI | GCAATG | 1 cut(s) | 470 |
| BseMII | CTCAG | 1 cut(s) | 569 |
| BsgI | GTGCAG | 1 cut(s) | 599 |
| BshTI | ACCGGT | 1 cut(s) | 315 |
| BsiSI | CCGG | 1 cut(s) | 316 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 371, 372 |
| BsmAI | GTCTC | 2 cut(s) | 324, 452 |
| BsmI | GAATGC | 1 cut(s) | 245 |
| Bso31I | GGTCTC | 1 cut(s) | 324 |
| Bsp119I | TTCGAA | 2 cut(s) | 110, 142 |
| BspCNI | CTCAG | 1 cut(s) | 568 |
| BspHI | TCATGA | 1 cut(s) | 199 |
| BspT104I | TTCGAA | 2 cut(s) | 110, 142 |
| BspTNI | GGTCTC | 1 cut(s) | 324 |
| BsrDI | GCAATG | 1 cut(s) | 470 |
| BsrFI | RCCGGY | 1 cut(s) | 315 |
| BssAI | RCCGGY | 1 cut(s) | 315 |
| BssECI | CCNNGG | 2 cut(s) | 72, 175 |
| BssNI | GRCGYC | 1 cut(s) | 53 |
| BssT1I | CCWWGG | 2 cut(s) | 72, 175 |
| Bst4CI | ACNGT | 4 cut(s) | 64, 107, 116, 341 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstACI | GRCGYC | 1 cut(s) | 53 |
| BstBAI | YACGTR | 1 cut(s) | 157 |
| BstBI | TTCGAA | 2 cut(s) | 110, 142 |
| BstDEI | CTNAG | 3 cut(s) | 425, 517, 555 |
| BstF5I | GGATG | 2 cut(s) | 191, 583 |
| BstMAI | GTCTC | 2 cut(s) | 324, 452 |
| BstSFI | CTRYAG | 1 cut(s) | 250 |
| BstSNI | TACGTA | 1 cut(s) | 157 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 182 |
| BtsCI | GGATG | 2 cut(s) | 191, 583 |
| BtsI | GCAGTG | 1 cut(s) | 611 |
| BtsIMutI | CAGTG | 2 cut(s) | 103, 611 |
| CciI | TCATGA | 1 cut(s) | 199 |
| Cfr10I | RCCGGY | 1 cut(s) | 315 |
| CseI | GACGC | 1 cut(s) | 42 |
| Csp6I | GTAC | 2 cut(s) | 158, 410 |
| CspAI | ACCGGT | 1 cut(s) | 315 |
| CviAII | CATG | 1 cut(s) | 200 |
| CviJI | RGCY | 4 cut(s) | 181, 276, 334, 418 |
| CviKI_1 | RGCY | 4 cut(s) | 181, 276, 334, 418 |
| CviQI | GTAC | 2 cut(s) | 158, 410 |
| DdeI | CTNAG | 3 cut(s) | 425, 517, 555 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Eco105I | TACGTA | 1 cut(s) | 157 |
| Eco130I | CCWWGG | 2 cut(s) | 72, 175 |
| Eco31I | GGTCTC | 1 cut(s) | 324 |
| Eco57I | CTGAAG | 2 cut(s) | 425, 434 |
| EcoT14I | CCWWGG | 2 cut(s) | 72, 175 |
| ErhI | CCWWGG | 2 cut(s) | 72, 175 |
| FaeI | CATG | 1 cut(s) | 203 |
| FaiI | YATR | 7 cut(s) | 201, 228, 232, 262, 264, 381, 398 |
| FatI | CATG | 1 cut(s) | 199 |
| FokI | GGATG | 2 cut(s) | 198, 570 |
| FspBI | CTAG | 1 cut(s) | 26 |
| HapII | CCGG | 1 cut(s) | 316 |
| HgaI | GACGC | 1 cut(s) | 42 |
| Hin1I | GRCGYC | 1 cut(s) | 53 |
| Hin1II | CATG | 1 cut(s) | 203 |
| HindIII | AAGCTT | 1 cut(s) | 416 |
| HinfI | GANTC | 5 cut(s) | 269, 347, 392, 452, 510 |
| HpaII | CCGG | 1 cut(s) | 316 |
| HphI | GGTGA | 2 cut(s) | 505, 627 |
| Hpy166II | GTNNAC | 1 cut(s) | 160 |
| Hpy188I | TCNGA | 1 cut(s) | 324 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 67, 200, 449, 557 |
| Hpy8I | GTNNAC | 1 cut(s) | 160 |
| Hpy99I | CGWCG | 1 cut(s) | 58 |
| HpyAV | CCTTC | 4 cut(s) | 44, 400, 500, 600 |
| HpyCH4III | ACNGT | 4 cut(s) | 64, 107, 116, 341 |
| HpyCH4IV | ACGT | 1 cut(s) | 156 |
| HpyCH4V | TGCA | 3 cut(s) | 224, 470, 616 |
| HpyF3I | CTNAG | 3 cut(s) | 425, 517, 555 |
| HpySE526I | ACGT | 1 cut(s) | 156 |
| Hsp92I | GRCGYC | 1 cut(s) | 53 |
| Hsp92II | CATG | 1 cut(s) | 203 |
| LpnPI | CCDG | 8 cut(s) | 258, 279, 316, 320, 329, 374, 416, 542 |
| MaeI | CTAG | 1 cut(s) | 26 |
| MaeII | ACGT | 1 cut(s) | 156 |
| MaeIII | GTNAC | 4 cut(s) | 64, 116, 152, 609 |
| MboII | GAAGA | 4 cut(s) | 140, 572, 584, 587 |
| MluCI | AATT | 4 cut(s) | 45, 79, 209, 579 |
| MlyI | GAGTC | 2 cut(s) | 356, 386 |
| MmeI | TCCRAC | 1 cut(s) | 289 |
| MnlI | CCTC | 4 cut(s) | 209, 298, 299, 447 |
| MroXI | GAANNNNTTC | 1 cut(s) | 579 |
| MseI | TTAA | 3 cut(s) | 78, 327, 420 |
| MspI | CCGG | 1 cut(s) | 316 |
| Mva1269I | GAATGC | 1 cut(s) | 245 |
| NlaIII | CATG | 1 cut(s) | 203 |
| NmeAIII | GCCGAG | 1 cut(s) | 79 |
| NmuCI | GTSAC | 2 cut(s) | 64, 609 |
| NspV | TTCGAA | 2 cut(s) | 110, 142 |
| PagI | TCATGA | 1 cut(s) | 199 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 148 |
| PctI | GAATGC | 1 cut(s) | 245 |
| PdmI | GAANNNNTTC | 1 cut(s) | 579 |
| PfeI | GAWTC | 3 cut(s) | 269, 452, 510 |
| PinAI | ACCGGT | 1 cut(s) | 315 |
| PleI | GAGTC | 2 cut(s) | 355, 386 |
| PpsI | GAGTC | 2 cut(s) | 355, 386 |
| Ppu21I | YACGTR | 1 cut(s) | 157 |
| RsaI | GTAC | 2 cut(s) | 159, 411 |
| RsaNI | GTAC | 2 cut(s) | 158, 410 |
| SaqAI | TTAA | 3 cut(s) | 78, 327, 420 |
| SchI | GAGTC | 2 cut(s) | 356, 386 |
| SfcI | CTRYAG | 1 cut(s) | 250 |
| SfuI | TTCGAA | 2 cut(s) | 110, 142 |
| SnaBI | TACGTA | 1 cut(s) | 157 |
| Sse9I | AATT | 4 cut(s) | 45, 79, 209, 579 |
| SspMI | CTAG | 1 cut(s) | 26 |
| StyI | CCWWGG | 2 cut(s) | 72, 175 |
| TaaI | ACNGT | 4 cut(s) | 64, 107, 116, 341 |
| TaiI | ACGT | 1 cut(s) | 159 |
| TaqI | TCGA | 5 cut(s) | 56, 110, 142, 345, 450 |
| TasI | AATT | 4 cut(s) | 45, 79, 209, 579 |
| TfiI | GAWTC | 3 cut(s) | 269, 452, 510 |
| Tru1I | TTAA | 3 cut(s) | 78, 327, 420 |
| Tru9I | TTAA | 3 cut(s) | 78, 327, 420 |
| TscAI | CASTG | 2 cut(s) | 110, 618 |
| TseFI | GTSAC | 2 cut(s) | 64, 609 |
| Tsp45I | GTSAC | 2 cut(s) | 64, 609 |
| TspDTI | ATGAA | 4 cut(s) | 83, 413, 515, 572 |
| TspRI | CASTG | 2 cut(s) | 110, 618 |
| XapI | RAATTY | 3 cut(s) | 45, 209, 579 |
| XbaI | TCTAGA | 1 cut(s) | 25 |
| XmnI | GAANNNNTTC | 1 cut(s) | 579 |
| XspI | CTAG | 1 cut(s) | 26 |