RLG00000005694

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011145
Physical Location & Seq
Forward (+)
869234 .. 873077
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005694

Sequence Viewer

Length: 2361 bp
ATGAAGCCAACTGAAGAAGAAGAAGAAGAACAAGGCTTCTTTCTCTTCATCATCATCTTCTCAAAGATGCTGTTGTTTCTTCGCACTCTGTTCCACACAAGTTGCAGAGTCTCCTCCCTTCGAGTAAGACCTAAATACCCATCATCTAATTCCTGCTTTATCAATGCATCATCATCATCACTATCATCATCGCATGGTTCTCTCATAGCTTCCCCTTTGGTTTGGTTCACCAGCTTCTTCTGTATTATTCGCTTCCCATTTGTCACTAAATCCAATCCTGATATGGTTCAAGAAAACTTAAATGTAGAATCTTTGAGTCGAATTGTTCAGCAGGACTATTGGGACGACCCCAGAATTGTTAGTGTGTTTGGTTCGGCATTGGCGCCGATTTGGGTGTCAAGGTTTTTGGTGGAACTGAGAAAAGATCCCAACTTGGCATTCAAGTTGTTCAAATGGGCGAAAACCCGGACCGGGTTTTGCCACACTACTGAGTCTTATTGTATTTTGGTTCACATACTTTTTGTTGGTAGAATGTATATTGATGCCCATGAGGTTATTAGAGAGTTGGTGTTGTTGAGCCGGGGGTTGCCGGGTTTTGATGTGTTTGATGGGCTGTGGGAGACCAGGAATGTTTGTCGTCCGGGGTTTGGAGTGTTTGATGCCTTGTTTAGTGTTTTGGTTGAGCTAGGAATGCTTGAGAAAGCAAGTGAGTGCTTCTTGAGGATGAGGAAGTGTAGAGTTTTGCCGAAAGTGCGATCTTGTAATGCCCTTTTGCACGGGCTTTCAAAGTCAGGGAAGGGGAATTTGTCAAGGCAGTTTTTTAAGGATATGCTTGGGGCTGGGATTTCCCCTTCTGTTTTCACATTCAATATAATGATTGGATATACGTGCAAAGAAGGCGATTTGGAAACCGCAAGAAGCTTGTTTGCACAAATGAAACAGTTGGGTCTTACACCTGATATTGTGACATATAATTCTCTTATTGACGGATATGGAAAGGTTGGATTATTAGATGATTCAGTTTGCATATTTGAAGAAATGAAGGATGTAGGTTGTGAACCTGATCTAATAACATACAATGCTTTGATTAATTGTTTTTGTAAATTTGAAAAAATGCCTCAAGCTTTCAATTTTCTCCGCAAGATGATGAGTAATGGCTTGAAACCGAATGTCATAACGTATAGCACGTTGATTGATGCCTTCTGTAAGGAAGGGATGATGCAAGAGGCAATTAAGATTTTTATAGACATGAAACGAGTTGGTCTTTCAGCTAATGAGTTCACCTATACTTCTTTGATTGATGCAAGTTGTAAAGCTGGAAATTTGAGCCAAGCACTGAAGTTCAGAAATGAGATGTTAGAGGCAGGAGTTAGCTTCAATATTGTAACTTATACGGCTCTACTGGATGGGCTGTGTGAAGATGGGGAGATGGAGGAAGCAGAAGAAGTTTTTAGGGAGGTGCTAAACTCTGGAATAATTCCTAACCAGGAAATATGTACCGCCCTTGTTCATGGGTATGTTAAGACTAAGAAGATGGAGAATGCTACAGAATTCTTGAAGGAAATCAAGGGGAAAGGCTTTAAACCAGATTTGTTACTTTATGGAACCATCATTTGGGTCCTTTGCTCTCAAAATAAGGTTGAAGAGGCTGAGCTTGTAATCAGTGAAATCAAGGATTGTGGTTTAACTGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTTCAAGAAAGGAAACACCAATGAGGCGCTCAATGTTTTACAGCGAATGCTGGACAACAATATTGAGGTTAGTGTGGTAACATATTGTGCACTAATTGATGGTTTGTGCAAAAAGGGGTTGCTCCAAGAGGCCATTACTTATTTTAGGATGATGTCCAACATTGGCGTGCAACCCAATGTTGCAGTTTTTACGGCCTTAATTGATGGTCTTTGTAAAAGTAGTTGCATTGAAGCAGCTAAGGAGCTGTTTAATGAAATGCTAGACAAGGGTATGATTCCAGATAAAGCTGCTTACACCACTCTAATAGATGGAAACTTAAAGCATGGAAATCTTGAGGAAGCTTTGAGCATGCACAGGAGAATGAAAGAAATTGGTATGGAGCTTGACCTGCATGCATATACTTCCTTGATTTGGGGGCTTTCTCACCTTGGTCAGATGCGACAAGCAAAAGCATTCCTTGATGAGATGATTGGGAAGGGTATAATTCCTGATGAGATTCTCATTGTTTGTCTTGTAAGAAAATACTATGAGCTAGGGAATGTGGATGAAGCCATCAAGTTGCAGACTGAATGGCAAAACAGGGGTCTAAGAACTGGAACTTCTAATTTTGTGTTTCCTAATGCAAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

787

Amino Acids

88.67

Weight (kDa)

5.97

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 249 - 293 1.2e-09 PPR repeat family
PPR_1 PF12854 281 - 313 1.8e-07 PPR repeat
PPR_2 PF13041 284 - 333 1.9e-16 PPR repeat family
PPR_3 PF13812 307 - 366 6.2e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 316 - 348 7.9e-10 PPR repeat
PPR_2 PF13041 319 - 368 1.1e-17 PPR repeat family
PPR PF01535 322 - 352 2.5e-08 PPR repeat
PPR_long PF17177 338 - 441 4.8e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 351 - 382 3.5e-10 PPR repeat
PPR_2 PF13041 354 - 403 2.4e-17 PPR repeat family
PPR PF01535 357 - 387 6.1e-06 PPR repeat
PPR_3 PF13812 379 - 435 4.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 385 - 418 1.8e-13 PPR repeat
PPR_2 PF13041 389 - 438 5.8e-18 PPR repeat family
PPR PF01535 392 - 421 4.1e-09 PPR repeat
PPR_long PF17177 407 - 484 1.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 412 - 468 4.9e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 421 - 452 3.3e-09 PPR repeat
PPR PF01535 427 - 457 2e-06 PPR repeat
PPR_2 PF13041 430 - 472 2.2e-11 PPR repeat family
PPR_long PF17177 443 - 603 9.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 450 - 495 2.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 456 - 486 1.8e-09 PPR repeat
PPR_2 PF13041 460 - 496 4.3e-08 PPR repeat family
PPR PF01535 462 - 492 2.5e-07 PPR repeat
PPR_3 PF13812 483 - 540 3.3e-07 Pentatricopeptide repeat domain
PPR_3 PF13812 553 - 608 1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 565 - 613 1.3e-13 PPR repeat family
PPR PF01535 568 - 597 5.7e-06 PPR repeat
PPR_long PF17177 584 - 733 2.3e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 588 - 644 3.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 596 - 627 3.6e-08 PPR repeat
TPR_24 PF23276 597 - 696 1.6e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 600 - 648 1.8e-12 PPR repeat family
PPR PF01535 602 - 632 1.2e-06 PPR repeat
PPR_1 PF12854 631 - 662 1.9e-07 PPR repeat
PPR_2 PF13041 634 - 680 3.2e-13 PPR repeat family
PPR PF01535 638 - 666 1.2e-06 PPR repeat
PPR_2 PF13041 669 - 717 9.3e-09 PPR repeat family
PPR PF01535 673 - 701 7.1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2124
AccB1I GGYRCC 1 cut(s) 382
AccB7I CCANNNNNTGG 1 cut(s) 1614
AciI CCGC 3 cut(s) 912, 1138, 1500
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 4 cut(s) 802, 1103, 1321, 1550
AcuI CTGAAG 2 cut(s) 33, 1358
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 1 cut(s) 1498
AfiI CCNNNNNNNGG 4 cut(s) 471, 647, 1614, 2139
AjnI CCWGG 2 cut(s) 623, 1485
AjuI GAANNNNNNNTTGG 4 cut(s) 422, 454, 1597, 1629
Alw21I GWGCWC 1 cut(s) 1819
Alw26I GTCTC 2 cut(s) 115, 614
Alw44I GTGCAC 1 cut(s) 1815
AlwI GGATC 1 cut(s) 419
AoxI GGCC 2 cut(s) 1857, 1920
ApaLI GTGCAC 1 cut(s) 1815
ApeKI GCWGC 2 cut(s) 1961, 2015
ApoI RAATTY 4 cut(s) 802, 1103, 1321, 1550
ArsI GACNNNNNNTTYG 2 cut(s) 2296, 2328
AseI ATTAAT 1 cut(s) 1089
AspLEI GCGC 2 cut(s) 385, 1756
AspS9I GGNCC 2 cut(s) 468, 1618
AsuC2I CCSGG 5 cut(s) 466, 472, 581, 591, 642
AsuHPI GGTGA 3 cut(s) 220, 1273, 2144
AvaII GGWCC 2 cut(s) 468, 1618
BaeGI GKGCMC 1 cut(s) 1819
BanI GGYRCC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 1819
BbvI GCAGC 2 cut(s) 1973, 2002
BceAI ACGGC 2 cut(s) 1410, 1935
BciT130I CCWGG 2 cut(s) 625, 1487
BcnI CCSGG 5 cut(s) 466, 472, 581, 591, 642
BcoDI GTCTC 2 cut(s) 115, 614
BfaI CTAG 3 cut(s) 686, 1988, 2261
BfmI CTRYAG 1 cut(s) 1545
BfoI RGCGCY 2 cut(s) 386, 1757
BfuAI ACCTGC 1 cut(s) 2124
BisI GCNGC 2 cut(s) 1962, 2016
BlpI GCTNAGC 1 cut(s) 1650
BlsI GCNGC 2 cut(s) 1963, 2017
Bme1390I CCNGG 7 cut(s) 466, 472, 581, 591, 625, 642, 1487
Bme18I GGWCC 2 cut(s) 468, 1618
BmgT120I GGNCC 2 cut(s) 468, 1618
BmiI GGNNCC 3 cut(s) 384, 1606, 1619
BmrFI CCNGG 7 cut(s) 466, 472, 581, 591, 625, 642, 1487
BmsI GCATC 9 cut(s) 57, 176, 532, 649, 1186, 1209, 1291, 1711, 2154
Bpu10I CCTNAGC 1 cut(s) 1965
Bpu1102I GCTNAGC 1 cut(s) 1650
BpuEI CTTGAG 4 cut(s) 716, 739, 1104, 2081
BpuMI CCSGG 5 cut(s) 466, 472, 581, 591, 642
BsaAI YACGTR 1 cut(s) 888
BsaHI GRCGYC 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 580, 641, 2155
Bsc4I CCNNNNNNNGG 4 cut(s) 471, 647, 1614, 2139
Bse1I ACTGG 2 cut(s) 1407, 2326
BseBI CCWGG 2 cut(s) 625, 1487
BseDI CCNNGG 3 cut(s) 580, 641, 2155
BseGI GGATG 7 cut(s) 729, 1051, 1221, 1411, 1726, 1881, 2278
BseLI CCNNNNNNNGG 4 cut(s) 471, 647, 1614, 2139
BseMII CTCAG 3 cut(s) 407, 480, 1641
BseNI ACTGG 2 cut(s) 1407, 2326
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 1819
BseXI GCAGC 2 cut(s) 1973, 2002
BseYI CCCAGC 1 cut(s) 839
BshFI GGCC 2 cut(s) 1859, 1922
BshNI GGYRCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 1819
BsiSI CCGG 5 cut(s) 466, 471, 580, 590, 641
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 4 cut(s) 471, 647, 1614, 2139
BsmAI GTCTC 2 cut(s) 115, 614
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 5 cut(s) 437, 696, 1546, 1779, 2180
BsnI GGCC 2 cut(s) 1859, 1922
Bso31I GGTCTC 1 cut(s) 614
Bsp1286I GDGCHC 1 cut(s) 1819
Bsp143I GATC 3 cut(s) 424, 755, 1063
Bsp1720I GCTNAGC 1 cut(s) 1650
BspACI CCGC 3 cut(s) 912, 1138, 1500
BspANI GGCC 2 cut(s) 1859, 1922
BspCNI CTCAG 3 cut(s) 408, 481, 1642
BspLI GGNNCC 3 cut(s) 384, 1606, 1619
BspMI ACCTGC 1 cut(s) 2124
BspPI GGATC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 614
BsrI ACTGG 2 cut(s) 1407, 2326
BssECI CCNNGG 3 cut(s) 580, 641, 2155
BssMI GATC 3 cut(s) 424, 755, 1063
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 2155
Bst2UI CCWGG 2 cut(s) 625, 1487
Bst4CI ACNGT 1 cut(s) 942
Bst6I CTCTTC 2 cut(s) 50, 1638
BstACI GRCGYC 1 cut(s) 383
BstBAI YACGTR 1 cut(s) 888
BstC8I GCNNGC 3 cut(s) 1895, 2078, 2121
BstDEI CTNAG 6 cut(s) 416, 489, 1527, 1650, 1965, 2315
BstF5I GGATG 7 cut(s) 729, 1051, 1221, 1411, 1726, 1881, 2278
BstH2I RGCGCY 2 cut(s) 386, 1757
BstHHI GCGC 2 cut(s) 385, 1756
BstKTI GATC 3 cut(s) 427, 758, 1066
BstMAI GTCTC 2 cut(s) 115, 614
BstMBI GATC 3 cut(s) 424, 755, 1063
BstMWI GCNNNNNNNGC 4 cut(s) 691, 751, 897, 2116
BstNI CCWGG 2 cut(s) 625, 1487
BstNSI RCATGY 2 cut(s) 2080, 2123
BstSCI CCNGG 7 cut(s) 464, 470, 579, 589, 623, 640, 1485
BstSFI CTRYAG 1 cut(s) 1545
BstSLI GKGCMC 1 cut(s) 1819
BstV1I GCAGC 2 cut(s) 1973, 2002
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 2 cut(s) 1859, 1922
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 7 cut(s) 729, 1051, 1221, 1411, 1726, 1881, 2278
BtsIMutI CAGTG 2 cut(s) 1334, 1669
BveI ACCTGC 1 cut(s) 2124
Cac8I GCNNGC 3 cut(s) 1895, 2078, 2121
CfoI GCGC 2 cut(s) 385, 1756
Cfr13I GGNCC 2 cut(s) 468, 1618
CpoI CGGWCCG 1 cut(s) 468
Csp6I GTAC 1 cut(s) 1497
CspCI CAANNNNNGTGG 4 cut(s) 83, 118, 1660, 1695
CspI CGGWCCG 1 cut(s) 468
CviAII CATG 7 cut(s) 194, 548, 1249, 1511, 2051, 2077, 2120
CviQI GTAC 1 cut(s) 1497
DdeI CTNAG 6 cut(s) 416, 489, 1527, 1650, 1965, 2315
DinI GGCGCC 1 cut(s) 384
DpnI GATC 3 cut(s) 426, 757, 1065
DpnII GATC 3 cut(s) 424, 755, 1063
DraI TTTAAA 1 cut(s) 1582
Eam1104I CTCTTC 2 cut(s) 50, 1638
EarI CTCTTC 2 cut(s) 50, 1638
Eco130I CCWWGG 1 cut(s) 2155
Eco31I GGTCTC 1 cut(s) 614
Eco47I GGWCC 2 cut(s) 468, 1618
Eco57I CTGAAG 2 cut(s) 33, 1358
EcoO109I RGGNCCY 1 cut(s) 1618
EcoRI GAATTC 1 cut(s) 1550
EcoRII CCWGG 2 cut(s) 623, 1485
EcoT14I CCWWGG 1 cut(s) 2155
EcoT22I ATGCAT 2 cut(s) 169, 2125
EgeI GGCGCC 1 cut(s) 384
EheI GGCGCC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 2155
FaeI CATG 7 cut(s) 197, 551, 1252, 1514, 2054, 2080, 2123
FalI AAGNNNNNCTT 2 cut(s) 2169, 2201
FaqI GGGAC 1 cut(s) 356
FatI CATG 7 cut(s) 193, 547, 1248, 1510, 2050, 2076, 2119
Fnu4HI GCNGC 2 cut(s) 1962, 2016
FokI GGATG 7 cut(s) 736, 1058, 1228, 1418, 1733, 1888, 2285
Fsp4HI GCNGC 2 cut(s) 1962, 2016
FspBI CTAG 3 cut(s) 686, 1988, 2261
GlaI GCGC 2 cut(s) 384, 1755
GluI GCNGC 2 cut(s) 1962, 2016
GsaI CCCAGC 1 cut(s) 843
HaeII RGCGCY 2 cut(s) 386, 1757
HaeIII GGCC 2 cut(s) 1859, 1922
HapII CCGG 5 cut(s) 466, 471, 580, 590, 641
HhaI GCGC 2 cut(s) 385, 1756
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 7 cut(s) 197, 551, 1252, 1514, 2054, 2080, 2123
Hin6I GCGC 2 cut(s) 383, 1754
HinP1I GCGC 2 cut(s) 383, 1754
HindIII AAGCTT 3 cut(s) 919, 1122, 2067
HinfI GANTC 7 cut(s) 108, 308, 316, 491, 1016, 2002, 2224
HpaII CCGG 5 cut(s) 466, 471, 580, 590, 641
HphI GGTGA 3 cut(s) 220, 1273, 2144
Hpy166II GTNNAC 5 cut(s) 228, 511, 1058, 1281, 1817
Hpy188I TCNGA 2 cut(s) 1346, 2163
Hpy188III TCNNGA 9 cut(s) 278, 290, 718, 1470, 1555, 1732, 2006, 2060, 2216
Hpy8I GTNNAC 5 cut(s) 228, 511, 1058, 1281, 1817
HpyAV CCTTC 9 cut(s) 128, 790, 861, 890, 1036, 1205, 1210, 1552, 2197
HpyCH4III ACNGT 1 cut(s) 942
HpyCH4IV ACGT 3 cut(s) 887, 1178, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 691, 751, 897, 2116
HpyF3I CTNAG 6 cut(s) 416, 489, 1527, 1650, 1965, 2315
HpySE526I ACGT 3 cut(s) 887, 1178, 1187
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 7 cut(s) 197, 551, 1252, 1514, 2054, 2080, 2123
HspAI GCGC 2 cut(s) 383, 1754
KasI GGCGCC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 424, 755, 1063
LmnI GCTCC 3 cut(s) 1854, 1969, 2107
Lsp1109I GCAGC 2 cut(s) 1973, 2002
LweI GCATC 9 cut(s) 57, 176, 532, 649, 1186, 1209, 1291, 1711, 2154
MaeI CTAG 3 cut(s) 686, 1988, 2261
MaeII ACGT 3 cut(s) 887, 1178, 1187
MaeIII GTNAC 5 cut(s) 262, 964, 1384, 1593, 1804
MalI GATC 3 cut(s) 426, 757, 1065
MboI GATC 3 cut(s) 424, 755, 1063
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 1819
Mly113I GGCGCC 1 cut(s) 383
MlyI GAGTC 3 cut(s) 117, 325, 500
MmeI TCCRAC 2 cut(s) 982, 1908
Mph1103I ATGCAT 2 cut(s) 169, 2125
MslI CAYNNNNRTG 2 cut(s) 1515, 1892
MspI CCGG 5 cut(s) 466, 471, 580, 590, 641
MspR9I CCNGG 7 cut(s) 466, 472, 581, 591, 625, 642, 1487
Mva1269I GAATGC 5 cut(s) 437, 696, 1546, 1779, 2180
MvaI CCWGG 2 cut(s) 625, 1487
MwoI GCNNNNNNNGC 4 cut(s) 691, 751, 897, 2116
NarI GGCGCC 1 cut(s) 383
NciI CCSGG 5 cut(s) 466, 472, 581, 591, 642
NdeII GATC 3 cut(s) 424, 755, 1063
NlaIII CATG 7 cut(s) 197, 551, 1252, 1514, 2054, 2080, 2123
NlaIV GGNNCC 3 cut(s) 384, 1606, 1619
NmuCI GTSAC 2 cut(s) 262, 964
NsiI ATGCAT 2 cut(s) 169, 2125
NspI RCATGY 2 cut(s) 2080, 2123
PaeI GCATGC 2 cut(s) 2080, 2123
PcsI WCGNNNNNNNCGW 1 cut(s) 1184
PctI GAATGC 5 cut(s) 437, 696, 1546, 1779, 2180
PfeI GAWTC 4 cut(s) 308, 1016, 2002, 2224
PflMI CCANNNNNTGG 1 cut(s) 1614
PkrI GCNGC 2 cut(s) 1963, 2017
PleI GAGTC 3 cut(s) 116, 324, 499
PluTI GGCGCC 1 cut(s) 386
PpsI GAGTC 3 cut(s) 116, 324, 499
Ppu21I YACGTR 1 cut(s) 888
PpuMI RGGWCCY 1 cut(s) 1618
PshBI ATTAAT 1 cut(s) 1089
Psp5II RGGWCCY 1 cut(s) 1618
Psp6I CCWGG 2 cut(s) 623, 1485
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 2 cut(s) 623, 1485
PspN4I GGNNCC 3 cut(s) 384, 1606, 1619
PspPI GGNCC 2 cut(s) 468, 1618
PspPPI RGGWCCY 1 cut(s) 1618
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 1 cut(s) 1498
RsaNI GTAC 1 cut(s) 1497
RseI CAYNNNNRTG 2 cut(s) 1515, 1892
Rsr2I CGGWCCG 1 cut(s) 468
RsrII CGGWCCG 1 cut(s) 468
SatI GCNGC 2 cut(s) 1962, 2016
Sau3AI GATC 3 cut(s) 424, 755, 1063
Sau96I GGNCC 2 cut(s) 468, 1618
SchI GAGTC 3 cut(s) 117, 325, 500
ScrFI CCNGG 7 cut(s) 466, 472, 581, 591, 625, 642, 1487
SduI GDGCHC 1 cut(s) 1819
SfaNI GCATC 9 cut(s) 57, 176, 532, 649, 1186, 1209, 1291, 1711, 2154
SfcI CTRYAG 1 cut(s) 1545
SfoI GGCGCC 1 cut(s) 384
SinI GGWCC 2 cut(s) 468, 1618
SmiMI CAYNNNNRTG 2 cut(s) 1515, 1892
SmlI CTYRAG 4 cut(s) 695, 718, 1119, 2060
SmoI CTYRAG 4 cut(s) 695, 718, 1119, 2060
SphI GCATGC 2 cut(s) 2080, 2123
SsiI CCGC 3 cut(s) 912, 1138, 1500
SspDI GGCGCC 1 cut(s) 382
SspI AATATT 2 cut(s) 1381, 1789
SspMI CTAG 3 cut(s) 686, 1988, 2261
StyD4I CCNGG 7 cut(s) 464, 470, 579, 589, 623, 640, 1485
StyI CCWWGG 1 cut(s) 2155
TaaI ACNGT 1 cut(s) 942
TaiI ACGT 3 cut(s) 890, 1181, 1190
TaqI TCGA 2 cut(s) 121, 319
TfiI GAWTC 4 cut(s) 308, 1016, 2002, 2224
TscAI CASTG 2 cut(s) 1341, 1669
TseFI GTSAC 2 cut(s) 262, 964
TseI GCWGC 2 cut(s) 1961, 2015
Tsp45I GTSAC 2 cut(s) 262, 964
TspGWI ACGGA 1 cut(s) 1002
TspRI CASTG 2 cut(s) 1341, 1669
Van91I CCANNNNNTGG 1 cut(s) 1614
VneI GTGCAC 1 cut(s) 1815
VpaK11BI GGWCC 2 cut(s) 468, 1618
VspI ATTAAT 1 cut(s) 1089
XapI RAATTY 4 cut(s) 802, 1103, 1321, 1550
XceI RCATGY 2 cut(s) 2080, 2123
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XspI CTAG 3 cut(s) 686, 1988, 2261
Zsp2I ATGCAT 2 cut(s) 169, 2125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.