RchiOBHm_Chr4g0446071

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011145
Physical Location & Seq
Reverse (-)
66366928 .. 66370619
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41360

Sequence Viewer

Length: 2307 bp
ATGAAGCCAACTGAAGAAGAAGAAGAAGGCTTCTTTCTATTCATCATCATCTTCCCCAAGATGCTGTTACTTCTTCGCACTCTGTTCCACACAAGTTGCAGAGTCTCCTCCCTTCGAGTAAGACCTAAATACCCATCATCTAATTCCTGCTTTATCAATGCATCATCATCACTATCATCATCGCATGGTTCTCTTATAGCTTCCCCTCTGGTTTGGTTCACCAGTTTCTTCTGTATTATTCGCTTCCCATTTGTCACTAAATCCAATCCTGATATGGTTCAAGAAAACTTAAATGTAGAATCTTTGAGTCGAATTGTTCAGCTGGACTATTGGGACGACCCCAGAATTGTTAGTGTGTTTGGTTCGGCATTGGCGCCGATTTGGGTGTCAAGGTTTTTGGTGGAACTGAGAAAAGATCCCAACTTGGCATTCAAGTTGTTCAAATGGGCGAAAACCCAGACCGGGTTTTGCCACACTACTGAGTCTTATTGTATTTTGGTTCACATACTTTTTGTTGGTAGAATGTATATTGATGCCCATGAGGTTATTAGAGAGTTGGTGTTGTTGAGCCGGGGGTTGCCGGGTTTTGATGTGTTTGATGGGCTGTGGGAGACCAGGAATGTTTGTCGTCCGGGGTTTGGAGTGTTTGATGCCTTGTTTAGTGTTTTGGTTGAGCTAGGAATGCTTGAGAAAGCAAGTGAGTGCTTCTTGAGGATGAGGAAGTGTAGAGTTTTGCCGAAAGTGCGATCTTGTAATGCCCTTCTGCACGGGCTTTCGAAGTCAGGGAAGGGGAATTTGTCAAGGCAGTTTTTTAAGGATATGCTTGGGGCTGGGATTTCCCCTTCTGTTTTCACATTCAATATAATGATTGGATATACGTGCAAAGAAGGCGATTTGGAAACCGCAAGAAGCTTGTTTGCACAAATGAAACAGTTGGGTCTTACACCTGATATTGTGACATATAATTCTCTTATTGACGGATATGGAAAGGTTGGATTATTAGATGATTCAGTTTGCATATTTGAAGAAATGAAGGATGTAGGTTGTGAACCTGATCTAATAACATACAATGCTTTGATTAATTGTTTTTGTAAATTTGAAAAAATGCCTCAAGCTTTCAATTTTCTCCGCGAGATGATGAGTGATGGCTTGAAACCGAATGTCATAACGTATAGCACGTTGATTGATGCCTTCTGTAAGGAAGGGATGATGCAAGAGGCAATTAAGATTTTTATAGACATGAAACGAGTTGGTCTTTCAGCTAATGAGTTCACCTATACTTCTTTGATTGATGCAAGTTGTAAAGCTGGAAATTTGAGCCAAGCACTGAAGTTCAGAAATGAGATGTTAGAGGCAGGAGTTAGTTTCAATATTGTAACTTATACGGCTCTACTGGATGGGCTGTGTGAAGATGGAAAGATGGAGGAAGCAGAAGACGTTTTTAGGGAGGTGCTAAACTCTGGAATAATTCCTAACCAGGAAATATGTACCGCCCTTGTTCATGGGTATGTCAAGACTAAGAAGATGGAGAATGCTACAGAATTCTTGAAGGATATCAAGGGGAAAGGCTTTAAACCAGATTTGTTACTTTATGGAACCATCATTTGGGTCCTTTGCTCTCAAAATAAGGTTGAAGAGGCTGAGCTTGTAATCAGTGAAATCAAGGATTGTGGTTTAACTGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTTCAAGAAAGGAAACACCAATGCGGCACTCAATGTTTTACAGCGAATGCTGGACAACAATATTGAGGTTAGTGTGGTAACATATTGTGCACTAATTGATGGTTTGTGCAAAAAGGGGTTGCTCCAAGAGGCCATTACTTATTTTAGGACGATGTCCAACATTGGCTTGCAGCCCAATGTTGCAGTTTTTACGGCCTTAATTGATGGTCTTTGTAAAGGTAGTTGCATTGAAGCAGCTAAGGAGCTGTTTAATGAAATGCTAGACAAGGGTATGATTCCAGATAAAGCTGCTTACACCACTCTAATAGATGGAAACTTAAAGCATGGAAATCTTGAGGAAGCTTTGAGCATGCACAGGAGAATGAAAGAAATTGGTATGGAGCTTGACCTGCATGCATATACTTCCTTGATTTGGGGGCTTTCTCACCTTGGTCAGATGCAACAAGCAAAAGCATTCCTTGATGAGATGATTGGGAAGGGTATAATTCCTGATGAGATTCTCATTGTTTGTCTTGTAAGAAAATACCATGAGCTAGGGAATGTGGATGAAGCCATCAAGTTGCAGACTGAATGGCAAAACAGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

768

Amino Acids

86.45

Weight (kDa)

5.78

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 246 - 290 1e-09 PPR repeat family
PPR_long PF17177 268 - 360 2.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 278 - 310 1.7e-07 PPR repeat
PPR_2 PF13041 281 - 330 1.9e-16 PPR repeat family
PPR_3 PF13812 304 - 363 6e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 313 - 345 7.7e-10 PPR repeat
PPR_2 PF13041 316 - 365 1.1e-17 PPR repeat family
PPR PF01535 319 - 349 2.4e-08 PPR repeat
PPR_long PF17177 335 - 440 2.1e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 348 - 379 1.4e-10 PPR repeat
PPR_2 PF13041 351 - 400 1.4e-17 PPR repeat family
PPR PF01535 354 - 384 3.1e-06 PPR repeat
PPR_3 PF13812 376 - 432 7.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 382 - 415 1.9e-13 PPR repeat
PPR_2 PF13041 389 - 435 8.9e-16 PPR repeat family
PPR PF01535 389 - 418 4e-09 PPR repeat
PPR_long PF17177 404 - 488 3.1e-06 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 416 - 518 4.2e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 418 - 449 3.2e-09 PPR repeat
PPR PF01535 424 - 454 1.9e-06 PPR repeat
PPR_2 PF13041 426 - 469 2.2e-12 PPR repeat family
PPR_long PF17177 439 - 600 7.3e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 447 - 492 3.5e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 453 - 483 3.2e-09 PPR repeat
PPR_2 PF13041 457 - 493 1.8e-08 PPR repeat family
PPR PF01535 459 - 489 1.9e-07 PPR repeat
PPR_3 PF13812 480 - 537 1.2e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 550 - 605 4.9e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 562 - 610 3.3e-13 PPR repeat family
PPR_long PF17177 575 - 730 4.4e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 587 - 641 9.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 593 - 624 3.1e-08 PPR repeat
PPR_2 PF13041 597 - 645 2.7e-12 PPR repeat family
PPR PF01535 599 - 628 5.4e-06 PPR repeat
PPR_1 PF12854 628 - 659 4.4e-07 PPR repeat
PPR_2 PF13041 631 - 677 1.7e-12 PPR repeat family
PPR PF01535 635 - 663 3.8e-06 PPR repeat
PPR PF01535 670 - 698 6.9e-07 PPR repeat
PPR_2 PF13041 670 - 714 4.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2115
AccB1I GGYRCC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 1605
AccII CGCG 1 cut(s) 1131
AciI CCGC 4 cut(s) 903, 1129, 1491, 1742
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 4 cut(s) 793, 1094, 1312, 1541
AcuI CTGAAG 2 cut(s) 33, 1349
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 1 cut(s) 1489
AfiI CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
AjnI CCWGG 2 cut(s) 614, 1476
AjuI GAANNNNNNNTTGG 4 cut(s) 413, 445, 1588, 1620
Alw21I GWGCWC 1 cut(s) 1810
Alw26I GTCTC 2 cut(s) 109, 605
Alw44I GTGCAC 1 cut(s) 1806
AlwI GGATC 1 cut(s) 410
AoxI GGCC 2 cut(s) 1848, 1911
ApaLI GTGCAC 1 cut(s) 1806
ApeKI GCWGC 3 cut(s) 1888, 1952, 2006
ApoI RAATTY 4 cut(s) 793, 1094, 1312, 1541
AseI ATTAAT 1 cut(s) 1080
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 1609
AsuC2I CCSGG 4 cut(s) 463, 572, 582, 633
AsuHPI GGTGA 3 cut(s) 211, 1264, 2135
AsuII TTCGAA 1 cut(s) 776
AvaII GGWCC 1 cut(s) 1609
BaeGI GKGCMC 1 cut(s) 1810
BanI GGYRCC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 1440
Bbv12I GWGCWC 1 cut(s) 1810
BbvI GCAGC 3 cut(s) 1900, 1964, 1993
BceAI ACGGC 2 cut(s) 1401, 1926
BciT130I CCWGG 2 cut(s) 616, 1478
BcnI CCSGG 4 cut(s) 463, 572, 582, 633
BcoDI GTCTC 2 cut(s) 109, 605
BfaI CTAG 3 cut(s) 677, 1979, 2252
BfmI CTRYAG 1 cut(s) 1536
BfoI RGCGCY 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 2115
BisI GCNGC 4 cut(s) 1743, 1889, 1953, 2007
BlpI GCTNAGC 1 cut(s) 1641
BlsI GCNGC 4 cut(s) 1744, 1890, 1954, 2008
Bme1390I CCNGG 6 cut(s) 463, 572, 582, 616, 633, 1478
Bme18I GGWCC 1 cut(s) 1609
BmgT120I GGNCC 1 cut(s) 1609
BmiI GGNNCC 3 cut(s) 375, 1597, 1610
BmrFI CCNGG 6 cut(s) 463, 572, 582, 616, 633, 1478
BmsI GCATC 9 cut(s) 51, 170, 523, 640, 1177, 1200, 1282, 1702, 2145
BpiI GAAGAC 1 cut(s) 1440
Bpu10I CCTNAGC 1 cut(s) 1956
Bpu1102I GCTNAGC 1 cut(s) 1641
Bpu14I TTCGAA 1 cut(s) 776
BpuEI CTTGAG 4 cut(s) 707, 730, 1095, 2072
BpuMI CCSGG 4 cut(s) 463, 572, 582, 633
BsaAI YACGTR 1 cut(s) 879
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 3 cut(s) 571, 632, 2146
Bsc4I CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
Bse1I ACTGG 2 cut(s) 222, 1398
BseBI CCWGG 2 cut(s) 616, 1478
BseDI CCNNGG 3 cut(s) 571, 632, 2146
BseGI GGATG 6 cut(s) 720, 1042, 1212, 1402, 1717, 2269
BseLI CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
BseMII CTCAG 3 cut(s) 398, 471, 1632
BseNI ACTGG 2 cut(s) 222, 1398
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 1810
BseXI GCAGC 3 cut(s) 1900, 1964, 1993
BseYI CCCAGC 1 cut(s) 830
BsgI GTGCAG 1 cut(s) 749
Bsh1236I CGCG 1 cut(s) 1131
BshFI GGCC 2 cut(s) 1850, 1913
BshNI GGYRCC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 1810
BsiSI CCGG 4 cut(s) 462, 571, 581, 632
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
BsmAI GTCTC 2 cut(s) 109, 605
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 5 cut(s) 428, 687, 1537, 1770, 2171
BsnI GGCC 2 cut(s) 1850, 1913
Bso31I GGTCTC 1 cut(s) 605
Bsp119I TTCGAA 1 cut(s) 776
Bsp1286I GDGCHC 1 cut(s) 1810
Bsp143I GATC 3 cut(s) 415, 746, 1054
Bsp1720I GCTNAGC 1 cut(s) 1641
BspACI CCGC 4 cut(s) 903, 1129, 1491, 1742
BspANI GGCC 2 cut(s) 1850, 1913
BspCNI CTCAG 3 cut(s) 399, 472, 1633
BspFNI CGCG 1 cut(s) 1131
BspLI GGNNCC 3 cut(s) 375, 1597, 1610
BspMI ACCTGC 1 cut(s) 2115
BspPI GGATC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 776
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 605
BsrI ACTGG 2 cut(s) 222, 1398
BssECI CCNNGG 3 cut(s) 571, 632, 2146
BssMI GATC 3 cut(s) 415, 746, 1054
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 2146
Bst2UI CCWGG 2 cut(s) 616, 1478
Bst4CI ACNGT 1 cut(s) 933
Bst6I CTCTTC 1 cut(s) 1629
BstACI GRCGYC 1 cut(s) 374
BstBAI YACGTR 1 cut(s) 879
BstBI TTCGAA 1 cut(s) 776
BstC8I GCNNGC 3 cut(s) 1886, 2069, 2112
BstDEI CTNAG 5 cut(s) 407, 480, 1518, 1641, 1956
BstF5I GGATG 6 cut(s) 720, 1042, 1212, 1402, 1717, 2269
BstFNI CGCG 1 cut(s) 1131
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 3 cut(s) 418, 749, 1057
BstMAI GTCTC 2 cut(s) 109, 605
BstMBI GATC 3 cut(s) 415, 746, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 682, 742, 888, 2107
BstNI CCWGG 2 cut(s) 616, 1478
BstNSI RCATGY 2 cut(s) 2071, 2114
BstSCI CCNGG 6 cut(s) 461, 570, 580, 614, 631, 1476
BstSFI CTRYAG 1 cut(s) 1536
BstSLI GKGCMC 1 cut(s) 1810
BstUI CGCG 1 cut(s) 1131
BstV1I GCAGC 3 cut(s) 1900, 1964, 1993
BstV2I GAAGAC 1 cut(s) 1440
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 2 cut(s) 1850, 1913
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 6 cut(s) 720, 1042, 1212, 1402, 1717, 2269
BtsIMutI CAGTG 2 cut(s) 1325, 1660
BveI ACCTGC 1 cut(s) 2115
Cac8I GCNNGC 3 cut(s) 1886, 2069, 2112
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 1609
Csp6I GTAC 1 cut(s) 1488
CspCI CAANNNNNGTGG 4 cut(s) 77, 112, 1651, 1686
CviAII CATG 8 cut(s) 185, 539, 1240, 1502, 2042, 2068, 2111, 2246
CviQI GTAC 1 cut(s) 1488
DdeI CTNAG 5 cut(s) 407, 480, 1518, 1641, 1956
DinI GGCGCC 1 cut(s) 375
DpnI GATC 3 cut(s) 417, 748, 1056
DpnII GATC 3 cut(s) 415, 746, 1054
DraI TTTAAA 1 cut(s) 1573
Eam1104I CTCTTC 1 cut(s) 1629
EarI CTCTTC 1 cut(s) 1629
Eco130I CCWWGG 1 cut(s) 2146
Eco31I GGTCTC 1 cut(s) 605
Eco32I GATATC 1 cut(s) 1555
Eco47I GGWCC 1 cut(s) 1609
Eco57I CTGAAG 2 cut(s) 33, 1349
EcoO109I RGGNCCY 1 cut(s) 1609
EcoRI GAATTC 1 cut(s) 1541
EcoRII CCWGG 2 cut(s) 614, 1476
EcoRV GATATC 1 cut(s) 1555
EcoT14I CCWWGG 1 cut(s) 2146
EcoT22I ATGCAT 2 cut(s) 163, 2116
EgeI GGCGCC 1 cut(s) 375
EheI GGCGCC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 2146
FaeI CATG 8 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114, 2249
FalI AAGNNNNNCTT 2 cut(s) 2160, 2192
FaqI GGGAC 1 cut(s) 347
FatI CATG 8 cut(s) 184, 538, 1239, 1501, 2041, 2067, 2110, 2245
Fnu4HI GCNGC 4 cut(s) 1743, 1889, 1953, 2007
FokI GGATG 6 cut(s) 727, 1049, 1219, 1409, 1724, 2276
Fsp4HI GCNGC 4 cut(s) 1743, 1889, 1953, 2007
FspBI CTAG 3 cut(s) 677, 1979, 2252
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 1743, 1889, 1953, 2007
GsaI CCCAGC 1 cut(s) 834
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 2 cut(s) 1850, 1913
HapII CCGG 4 cut(s) 462, 571, 581, 632
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 8 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114, 2249
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HindIII AAGCTT 3 cut(s) 910, 1113, 2058
HinfI GANTC 7 cut(s) 102, 299, 307, 482, 1007, 1993, 2215
HpaII CCGG 4 cut(s) 462, 571, 581, 632
HphI GGTGA 3 cut(s) 211, 1264, 2135
Hpy166II GTNNAC 5 cut(s) 219, 502, 1049, 1272, 1808
Hpy188I TCNGA 2 cut(s) 1337, 2154
Hpy8I GTNNAC 5 cut(s) 219, 502, 1049, 1272, 1808
HpyCH4III ACNGT 1 cut(s) 933
HpyCH4IV ACGT 4 cut(s) 878, 1169, 1178, 1437
HpyF10VI GCNNNNNNNGC 4 cut(s) 682, 742, 888, 2107
HpyF3I CTNAG 5 cut(s) 407, 480, 1518, 1641, 1956
HpySE526I ACGT 4 cut(s) 878, 1169, 1178, 1437
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 8 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114, 2249
HspAI GCGC 1 cut(s) 374
KasI GGCGCC 1 cut(s) 373
Kzo9I GATC 3 cut(s) 415, 746, 1054
LmnI GCTCC 3 cut(s) 1845, 1960, 2098
Lsp1109I GCAGC 3 cut(s) 1900, 1964, 1993
LweI GCATC 9 cut(s) 51, 170, 523, 640, 1177, 1200, 1282, 1702, 2145
MaeI CTAG 3 cut(s) 677, 1979, 2252
MaeII ACGT 4 cut(s) 878, 1169, 1178, 1437
MaeIII GTNAC 6 cut(s) 66, 253, 955, 1375, 1584, 1795
MalI GATC 3 cut(s) 417, 748, 1056
MboI GATC 3 cut(s) 415, 746, 1054
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 1810
Mly113I GGCGCC 1 cut(s) 374
MlyI GAGTC 3 cut(s) 111, 316, 491
MmeI TCCRAC 2 cut(s) 973, 1899
Mph1103I ATGCAT 2 cut(s) 163, 2116
MseI TTAA 9 cut(s) 290, 813, 1080, 1224, 1572, 1676, 1916, 1968, 2036
MslI CAYNNNNRTG 1 cut(s) 1506
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 4 cut(s) 462, 571, 581, 632
MspR9I CCNGG 6 cut(s) 463, 572, 582, 616, 633, 1478
Mva1269I GAATGC 5 cut(s) 428, 687, 1537, 1770, 2171
MvaI CCWGG 2 cut(s) 616, 1478
MvnI CGCG 1 cut(s) 1131
MwoI GCNNNNNNNGC 4 cut(s) 682, 742, 888, 2107
NarI GGCGCC 1 cut(s) 374
NciI CCSGG 4 cut(s) 463, 572, 582, 633
NdeII GATC 3 cut(s) 415, 746, 1054
NlaIII CATG 8 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114, 2249
NlaIV GGNNCC 3 cut(s) 375, 1597, 1610
NmuCI GTSAC 2 cut(s) 253, 955
NsiI ATGCAT 2 cut(s) 163, 2116
NspI RCATGY 2 cut(s) 2071, 2114
NspV TTCGAA 1 cut(s) 776
PaeI GCATGC 2 cut(s) 2071, 2114
PcsI WCGNNNNNNNCGW 1 cut(s) 1175
PctI GAATGC 5 cut(s) 428, 687, 1537, 1770, 2171
PfeI GAWTC 4 cut(s) 299, 1007, 1993, 2215
PflFI GACNNNGTC 1 cut(s) 1870
PflMI CCANNNNNTGG 1 cut(s) 1605
PkrI GCNGC 4 cut(s) 1744, 1890, 1954, 2008
PleI GAGTC 3 cut(s) 110, 315, 490
PluTI GGCGCC 1 cut(s) 377
PpsI GAGTC 3 cut(s) 110, 315, 490
Ppu21I YACGTR 1 cut(s) 879
PpuMI RGGWCCY 1 cut(s) 1609
PshBI ATTAAT 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 1609
Psp6I CCWGG 2 cut(s) 614, 1476
PspFI CCCAGC 1 cut(s) 830
PspGI CCWGG 2 cut(s) 614, 1476
PspN4I GGNNCC 3 cut(s) 375, 1597, 1610
PspPI GGNCC 1 cut(s) 1609
PspPPI RGGWCCY 1 cut(s) 1609
PsuI RGATCY 1 cut(s) 415
PsyI GACNNNGTC 1 cut(s) 1870
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 1489
RsaNI GTAC 1 cut(s) 1488
RseI CAYNNNNRTG 1 cut(s) 1506
SaqAI TTAA 9 cut(s) 290, 813, 1080, 1224, 1572, 1676, 1916, 1968, 2036
SatI GCNGC 4 cut(s) 1743, 1889, 1953, 2007
Sau3AI GATC 3 cut(s) 415, 746, 1054
Sau96I GGNCC 1 cut(s) 1609
SchI GAGTC 3 cut(s) 111, 316, 491
ScrFI CCNGG 6 cut(s) 463, 572, 582, 616, 633, 1478
SduI GDGCHC 1 cut(s) 1810
SfaNI GCATC 9 cut(s) 51, 170, 523, 640, 1177, 1200, 1282, 1702, 2145
SfcI CTRYAG 1 cut(s) 1536
SfoI GGCGCC 1 cut(s) 375
SfuI TTCGAA 1 cut(s) 776
SinI GGWCC 1 cut(s) 1609
SmiMI CAYNNNNRTG 1 cut(s) 1506
SmlI CTYRAG 4 cut(s) 686, 709, 1110, 2051
SmoI CTYRAG 4 cut(s) 686, 709, 1110, 2051
SphI GCATGC 2 cut(s) 2071, 2114
SsiI CCGC 4 cut(s) 903, 1129, 1491, 1742
SspDI GGCGCC 1 cut(s) 373
SspI AATATT 2 cut(s) 1372, 1780
SspMI CTAG 3 cut(s) 677, 1979, 2252
StyD4I CCNGG 6 cut(s) 461, 570, 580, 614, 631, 1476
StyI CCWWGG 1 cut(s) 2146
TaaI ACNGT 1 cut(s) 933
TaiI ACGT 4 cut(s) 881, 1172, 1181, 1440
TaqI TCGA 3 cut(s) 115, 310, 776
TauI GCSGC 1 cut(s) 1745
TfiI GAWTC 4 cut(s) 299, 1007, 1993, 2215
Tru1I TTAA 9 cut(s) 290, 813, 1080, 1224, 1572, 1676, 1916, 1968, 2036
Tru9I TTAA 9 cut(s) 290, 813, 1080, 1224, 1572, 1676, 1916, 1968, 2036
TscAI CASTG 2 cut(s) 1332, 1660
TseFI GTSAC 2 cut(s) 253, 955
TseI GCWGC 3 cut(s) 1888, 1952, 2006
Tsp45I GTSAC 2 cut(s) 253, 955
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 2 cut(s) 1332, 1660
Tth111I GACNNNGTC 1 cut(s) 1870
Van91I CCANNNNNTGG 1 cut(s) 1605
VneI GTGCAC 1 cut(s) 1806
VpaK11BI GGWCC 1 cut(s) 1609
VspI ATTAAT 1 cut(s) 1080
XapI RAATTY 4 cut(s) 793, 1094, 1312, 1541
XceI RCATGY 2 cut(s) 2071, 2114
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 3 cut(s) 677, 1979, 2252
Zsp2I ATGCAT 2 cut(s) 163, 2116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.