Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02150 AT2G02150 |
| fragaria_vesca | FvH4_4g36310 FvH4_4g36310 |
| malus_domestica | MD13G1010200.v1.1 |
| prunus_persica | Prupe.1G342600_v2.0.a1 |
| pyrus_communis | pycom13g00850 |
| rosa_chinensis | RchiOBHm_Chr4g0446071 |
| rosa_laevigata | RLG00000005694 |
| rosa_multiflora | Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00386480 |
| rosa_rugosa | Rorug04G0366900 Rorug04G0367000 Rorug04G0367100 |
| rosa_samantha | Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900 |
| rosa_wichuraiana | Rw4G036670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 771 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 261 |
| AciI | CCGC | 1 cut(s) | 147 |
| AcsI | RAATTY | 2 cut(s) | 197, 973 |
| AfaI | GTAC | 1 cut(s) | 145 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 261, 786 |
| AgsI | TTSAA | 5 cut(s) | 25, 205, 290, 379, 605 |
| AjnI | CCWGG | 1 cut(s) | 132 |
| AluBI | AGCT | 8 cut(s) | 44, 301, 611, 619, 662, 716, 757, 907 |
| AluI | AGCT | 8 cut(s) | 44, 301, 611, 619, 662, 716, 757, 907 |
| Alw21I | GWGCWC | 1 cut(s) | 466 |
| Alw44I | GTGCAC | 1 cut(s) | 462 |
| AoxI | GGCC | 1 cut(s) | 567 |
| ApaLI | GTGCAC | 1 cut(s) | 462 |
| ApeKI | GCWGC | 2 cut(s) | 608, 662 |
| ApoI | RAATTY | 2 cut(s) | 197, 973 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 943, 975 |
| AspS9I | GGNCC | 2 cut(s) | 252, 265 |
| AsuHPI | GGTGA | 1 cut(s) | 791 |
| AvaII | GGWCC | 2 cut(s) | 252, 265 |
| BaeGI | GKGCMC | 1 cut(s) | 466 |
| Bbv12I | GWGCWC | 1 cut(s) | 466 |
| BbvI | GCAGC | 2 cut(s) | 620, 649 |
| BccI | CCATC | 9 cut(s) | 47, 62, 70, 175, 263, 467, 572, 677, 935 |
| BceAI | ACGGC | 1 cut(s) | 582 |
| BciT130I | CCWGG | 1 cut(s) | 134 |
| BfaI | CTAG | 3 cut(s) | 635, 818, 908 |
| BfmI | CTRYAG | 1 cut(s) | 192 |
| BfuAI | ACCTGC | 1 cut(s) | 771 |
| BisI | GCNGC | 2 cut(s) | 609, 663 |
| BlpI | GCTNAGC | 1 cut(s) | 297 |
| BlsI | GCNGC | 2 cut(s) | 610, 664 |
| Bme1390I | CCNGG | 1 cut(s) | 134 |
| Bme18I | GGWCC | 2 cut(s) | 252, 265 |
| BmgT120I | GGNCC | 2 cut(s) | 252, 265 |
| BmiI | GGNNCC | 2 cut(s) | 253, 266 |
| BmrFI | CCNGG | 1 cut(s) | 134 |
| BmsI | GCATC | 2 cut(s) | 358, 801 |
| Bpu10I | CCTNAGC | 1 cut(s) | 612 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 297 |
| BpuEI | CTTGAG | 1 cut(s) | 728 |
| BsaJI | CCNNGG | 1 cut(s) | 802 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 261, 786 |
| Bse1I | ACTGG | 3 cut(s) | 54, 309, 973 |
| BseBI | CCWGG | 1 cut(s) | 134 |
| BseDI | CCNNGG | 1 cut(s) | 802 |
| BseGI | GGATG | 3 cut(s) | 58, 373, 925 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 261, 786 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseNI | ACTGG | 3 cut(s) | 54, 309, 973 |
| BseSI | GKGCMC | 1 cut(s) | 466 |
| BseXI | GCAGC | 2 cut(s) | 620, 649 |
| BshFI | GGCC | 1 cut(s) | 569 |
| BsiHKAI | GWGCWC | 1 cut(s) | 466 |
| BslFI | GGGAC | 1 cut(s) | 265 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 261, 786 |
| BsmFI | GGGAC | 1 cut(s) | 265 |
| BsmI | GAATGC | 3 cut(s) | 193, 426, 827 |
| BsnI | GGCC | 1 cut(s) | 569 |
| Bsp1286I | GDGCHC | 1 cut(s) | 466 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 297 |
| BspACI | CCGC | 1 cut(s) | 147 |
| BspANI | GGCC | 1 cut(s) | 569 |
| BspCNI | CTCAG | 1 cut(s) | 289 |
| BspLI | GGNNCC | 2 cut(s) | 253, 266 |
| BspMI | ACCTGC | 1 cut(s) | 771 |
| BsrI | ACTGG | 3 cut(s) | 54, 309, 973 |
| BssECI | CCNNGG | 1 cut(s) | 802 |
| BssT1I | CCWWGG | 1 cut(s) | 802 |
| Bst2UI | CCWGG | 1 cut(s) | 134 |
| Bst6I | CTCTTC | 1 cut(s) | 285 |
| BstC8I | GCNNGC | 3 cut(s) | 542, 725, 768 |
| BstDEI | CTNAG | 4 cut(s) | 174, 297, 612, 962 |
| BstF5I | GGATG | 3 cut(s) | 58, 373, 925 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 763 |
| BstNI | CCWGG | 1 cut(s) | 134 |
| BstNSI | RCATGY | 2 cut(s) | 727, 770 |
| BstSCI | CCNGG | 1 cut(s) | 132 |
| BstSFI | CTRYAG | 1 cut(s) | 192 |
| BstSLI | GKGCMC | 1 cut(s) | 466 |
| BstV1I | GCAGC | 2 cut(s) | 620, 649 |
| BsuRI | GGCC | 1 cut(s) | 569 |
| BtsCI | GGATG | 3 cut(s) | 58, 373, 925 |
| BtsIMutI | CAGTG | 1 cut(s) | 316 |
| BveI | ACCTGC | 1 cut(s) | 771 |
| Cac8I | GCNNGC | 3 cut(s) | 542, 725, 768 |
| Cfr13I | GGNCC | 2 cut(s) | 252, 265 |
| Csp6I | GTAC | 1 cut(s) | 144 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 307, 342 |
| CviAII | CATG | 4 cut(s) | 158, 698, 724, 767 |
| CviQI | GTAC | 1 cut(s) | 144 |
| DdeI | CTNAG | 4 cut(s) | 174, 297, 612, 962 |
| DraI | TTTAAA | 1 cut(s) | 229 |
| Eam1104I | CTCTTC | 1 cut(s) | 285 |
| EarI | CTCTTC | 1 cut(s) | 285 |
| Eco130I | CCWWGG | 1 cut(s) | 802 |
| Eco32I | GATATC | 1 cut(s) | 211 |
| Eco47I | GGWCC | 2 cut(s) | 252, 265 |
| EcoO109I | RGGNCCY | 1 cut(s) | 265 |
| EcoRI | GAATTC | 1 cut(s) | 197 |
| EcoRII | CCWGG | 1 cut(s) | 132 |
| EcoRV | GATATC | 1 cut(s) | 211 |
| EcoT14I | CCWWGG | 1 cut(s) | 802 |
| EcoT22I | ATGCAT | 1 cut(s) | 772 |
| ErhI | CCWWGG | 1 cut(s) | 802 |
| FaeI | CATG | 4 cut(s) | 161, 701, 727, 770 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 816, 848 |
| FaqI | GGGAC | 1 cut(s) | 265 |
| FatI | CATG | 4 cut(s) | 157, 697, 723, 766 |
| Fnu4HI | GCNGC | 2 cut(s) | 609, 663 |
| FokI | GGATG | 3 cut(s) | 65, 380, 932 |
| Fsp4HI | GCNGC | 2 cut(s) | 609, 663 |
| FspBI | CTAG | 3 cut(s) | 635, 818, 908 |
| GluI | GCNGC | 2 cut(s) | 609, 663 |
| HaeIII | GGCC | 1 cut(s) | 569 |
| Hin1II | CATG | 4 cut(s) | 161, 701, 727, 770 |
| HindIII | AAGCTT | 1 cut(s) | 714 |
| HinfI | GANTC | 2 cut(s) | 649, 871 |
| HphI | GGTGA | 1 cut(s) | 791 |
| Hpy166II | GTNNAC | 1 cut(s) | 464 |
| Hpy188I | TCNGA | 1 cut(s) | 810 |
| Hpy188III | TCNNGA | 6 cut(s) | 117, 202, 379, 653, 707, 863 |
| Hpy8I | GTNNAC | 1 cut(s) | 464 |
| HpyAV | CCTTC | 2 cut(s) | 199, 844 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 763 |
| HpyF3I | CTNAG | 4 cut(s) | 174, 297, 612, 962 |
| Hsp92II | CATG | 4 cut(s) | 161, 701, 727, 770 |
| LmnI | GCTCC | 3 cut(s) | 501, 616, 754 |
| Lsp1109I | GCAGC | 2 cut(s) | 620, 649 |
| LweI | GCATC | 2 cut(s) | 358, 801 |
| MaeI | CTAG | 3 cut(s) | 635, 818, 908 |
| MaeIII | GTNAC | 4 cut(s) | 31, 240, 304, 451 |
| MboII | GAAGA | 5 cut(s) | 77, 85, 101, 190, 302 |
| MhlI | GDGCHC | 1 cut(s) | 466 |
| MluCI | AATT | 8 cut(s) | 123, 197, 468, 573, 744, 858, 973, 979 |
| MmeI | TCCRAC | 1 cut(s) | 555 |
| MnlI | CCTC | 7 cut(s) | 73, 97, 286, 391, 433, 496, 703 |
| Mph1103I | ATGCAT | 1 cut(s) | 772 |
| MseI | TTAA | 7 cut(s) | 168, 228, 332, 572, 624, 692, 1006 |
| MslI | CAYNNNNRTG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 1 cut(s) | 134 |
| Mva1269I | GAATGC | 3 cut(s) | 193, 426, 827 |
| MvaI | CCWGG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 763 |
| NlaIII | CATG | 4 cut(s) | 161, 701, 727, 770 |
| NlaIV | GGNNCC | 2 cut(s) | 253, 266 |
| NsiI | ATGCAT | 1 cut(s) | 772 |
| NspI | RCATGY | 2 cut(s) | 727, 770 |
| PaeI | GCATGC | 2 cut(s) | 727, 770 |
| PctI | GAATGC | 3 cut(s) | 193, 426, 827 |
| PfeI | GAWTC | 2 cut(s) | 649, 871 |
| PflFI | GACNNNGTC | 1 cut(s) | 526 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 261 |
| PkrI | GCNGC | 2 cut(s) | 610, 664 |
| PpuMI | RGGWCCY | 1 cut(s) | 265 |
| Psp5II | RGGWCCY | 1 cut(s) | 265 |
| Psp6I | CCWGG | 1 cut(s) | 132 |
| PspGI | CCWGG | 1 cut(s) | 132 |
| PspN4I | GGNNCC | 2 cut(s) | 253, 266 |
| PspPI | GGNCC | 2 cut(s) | 252, 265 |
| PspPPI | RGGWCCY | 1 cut(s) | 265 |
| PsyI | GACNNNGTC | 1 cut(s) | 526 |
| RsaI | GTAC | 1 cut(s) | 145 |
| RsaNI | GTAC | 1 cut(s) | 144 |
| RseI | CAYNNNNRTG | 1 cut(s) | 162 |
| SaqAI | TTAA | 7 cut(s) | 168, 228, 332, 572, 624, 692, 1006 |
| SatI | GCNGC | 2 cut(s) | 609, 663 |
| Sau96I | GGNCC | 2 cut(s) | 252, 265 |
| ScrFI | CCNGG | 1 cut(s) | 134 |
| SduI | GDGCHC | 1 cut(s) | 466 |
| SfaNI | GCATC | 2 cut(s) | 358, 801 |
| SfcI | CTRYAG | 1 cut(s) | 192 |
| SinI | GGWCC | 2 cut(s) | 252, 265 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 162 |
| SmlI | CTYRAG | 1 cut(s) | 707 |
| SmoI | CTYRAG | 1 cut(s) | 707 |
| SphI | GCATGC | 2 cut(s) | 727, 770 |
| Sse9I | AATT | 8 cut(s) | 123, 197, 468, 573, 744, 858, 973, 979 |
| SsiI | CCGC | 1 cut(s) | 147 |
| SspI | AATATT | 2 cut(s) | 28, 436 |
| SspMI | CTAG | 3 cut(s) | 635, 818, 908 |
| StyD4I | CCNGG | 1 cut(s) | 132 |
| StyI | CCWWGG | 1 cut(s) | 802 |
| TasI | AATT | 8 cut(s) | 123, 197, 468, 573, 744, 858, 973, 979 |
| TfiI | GAWTC | 2 cut(s) | 649, 871 |
| Tru1I | TTAA | 7 cut(s) | 168, 228, 332, 572, 624, 692, 1006 |
| Tru9I | TTAA | 7 cut(s) | 168, 228, 332, 572, 624, 692, 1006 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TseI | GCWGC | 2 cut(s) | 608, 662 |
| TspDTI | ATGAA | 5 cut(s) | 146, 337, 642, 752, 936 |
| TspRI | CASTG | 1 cut(s) | 316 |
| Tth111I | GACNNNGTC | 1 cut(s) | 526 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 261 |
| VneI | GTGCAC | 1 cut(s) | 462 |
| VpaK11BI | GGWCC | 2 cut(s) | 252, 265 |
| XapI | RAATTY | 2 cut(s) | 197, 973 |
| XceI | RCATGY | 2 cut(s) | 727, 770 |
| XspI | CTAG | 3 cut(s) | 635, 818, 908 |
| Zsp2I | ATGCAT | 1 cut(s) | 772 |