Rh4BG438700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011145
Physical Location & Seq
Reverse (-)
57969889 .. 57972240
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG438700.1

Sequence Viewer

Length: 2352 bp
ATGAAGCCAACTGAAGAAGAAGAACAAGGCTTCTTTCTATTCATCATCATCTTCTCCAAGATGCTGTTATTTCTTCGCACTCTGTTCCACACAAGTTGCAGAGTCTCCTCCCTTCGAGTAAGACCTAAATACCCATCGTCTAATTCCTGCTTTATCAATGCATCATCATCACTATCATCATCGCATGGTTCTCTCATAGCTTCCCCTTTGGTTTGGTTCACCAGTTTCTTCTGTATTATTCGCTTCCCATTTGTCACTAAATCCAATCCTGATATGGTTCAAGAAAACTTAAATGTAGAATCTTTGAGTCGAATTGTTCAGCAGGACTTTTGGGACGACCCCAGAATTGTTAGTGTGTTTGGTTCGGCATTGGCGCCGATTTGGGTGTCAAGGTTTTTGGTGGAACTGAGAAAAGATCCCAACTTGGCATTCAAGTTGTTCAAATGGGCGAAAACCCGGACCGGGTTTTGCCACACTACTGAGTCTTACTGTATTTTGGTTCACGTACTTTTTGTTGGTAGAATGTATATTGATGCCCATGAGGTTATTAGAGAGTTAGTGTTGTTGAGCCGGGGGTTGCCGGGTTTTGATGTGTTTGATGGGCTGTGGGAGACCAGGAATGTTTGTCGTCCGGGGTTTGGAGTGTTTGATGCCTTGTTTAGTGTCTTGGTTGAGCTAGGAATGCTTGAGAAAGCAAGTGAGTGCTTCTTGAGGATGAGGAAGTGTAGAGTTTTGCCGAAAGTGCGATCTTGTAATGCCCTTTTGCACGGGCTTTCAAAGTCAGGGAAGGGGAATTTGTCAAGGCAGTTTTTTAAGGATATGCTTGGGGCTGGGATTTCCCCTTCTGTTTTCACATTCAATATAATGATTGGATATACGTGCAAAGAAGGCGATTTGGAAACCGCAAGAAGCTTGTTTGCACAGATGAAACAGTTGGGTCTTACACCTGATATTGTGACATATAATTCTCTTATTGACGGATATGGAAAGGTTGGACTATTAGATGATTCATTTTGCATATTTGAAGAAATGAAGGATGCAGGTTGTGAACCTGATCTAATAACATACAATGCTTTGATTAATTGTTTTTGTAAATTTGAAAAAATGCCTCAAGCTTTCAATTTTCTCCGCGAGATGATGAGTAATGGCTTGAAACCGAATGTCATAACGTATAGCACGTTGATTGATGCCTTCTGTAAGGAAGGGATGATGCAAGAGGCAATTAAGATTTTTATAGACATGAAACGAGTTGGTCTTTCAGCTAATGAGTTCACCTATACTTCTTTGATTGATGCAAGTTGTAAAGCTGGAAATTTGAACCAAGCACTGAAGTTCAGAAATGAGATGTTAGAGGCAGGAGTTAGCTTCAATATTGTAACTTATACAGCTCTACTGGATGGGCTGTGTGAAGATGGGAAGATGGAGGAAGCAGAAAAAGTTTTTAGGGAGGTGCTAAACTCTGGAATAATTCCTAACCAGGAAATATGTACCGCCCTTGTTCATGGGTATGTTAAGACTAAGAAGATGGAGAATGCTACAGAATTCTTGAAGGACATCAAGGGGAAAGGCTTTAAACCAGATTTGTTACTTTATGGAACCATCATTTGGGTCATTTGCTCTCAAAATAAGGTTGAAGAGGCTGAGCTTGTAATCAGTGAAATCAAGGATTGTGGTTTAACCGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTTCAAGAAAGGAAACACCAATGAGGCACTCAATGTTTTACAGCGAATGCTGGACAACAATATTGAGGTTAGTGTGGTAACATATTGTGCACTAATTGATGGTTTGTGCAAAAAGGGGTTGCTCCAAGAGGCCATTACTTATTTTAGGACGATGTCCAACATTGGCTTGCAACCCAATGTTGCAGTTTTTACGGCCTTAATTGATGGTCTTTGTAAAGGTAGTTGCATTGAAGCAGCTAAGGAGCTGTTTAATGAAATGCTAGACAAGGGTATGATTCCAGATAAAGCTGCTTACACCACTCTAATAGATGGAAACTTAAAGCATGGAAATCTTGAGGAAGCTTTGAGCATGCACAGGAGAATGAAAGAAATTGGTATGGAGCTTGACCTGCATGCATATACTTCCTTGATTTGGGGGCTTTCTCACCTTGGTCAGATGCAACAAGCAAAAGCATTCCTTGATGAGATGATTGGGAAGGGTATAATTCCTGATGAGATTCTCATTGTTTGTCTTGTAAGAAAATACTATGAGCTAGGGAATGTGGATGAAGCCATCAAGTTGCAGACTGAATGGCAAAACAGGGGTCTAAGAACTGGAACTTCTAATTTTGTGTTTCCTAATGCAAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

783

Amino Acids

88.25

Weight (kDa)

6.25

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 246 - 290 1e-09 PPR repeat family
PPR_1 PF12854 278 - 310 1.8e-07 PPR repeat
PPR_2 PF13041 281 - 330 1.9e-16 PPR repeat family
PPR_3 PF13812 304 - 363 6.6e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 313 - 345 3.2e-10 PPR repeat
PPR_2 PF13041 316 - 365 1.5e-18 PPR repeat family
PPR PF01535 319 - 349 7.3e-09 PPR repeat
PPR_long PF17177 334 - 441 6.1e-12 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 348 - 379 1.1e-10 PPR repeat
PPR_2 PF13041 351 - 400 6e-18 PPR repeat family
PPR PF01535 354 - 384 2.4e-06 PPR repeat
PPR_3 PF13812 376 - 432 1.7e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 382 - 415 1.8e-13 PPR repeat
PPR_2 PF13041 389 - 435 9.1e-16 PPR repeat family
PPR PF01535 389 - 418 4.1e-09 PPR repeat
PPR_long PF17177 404 - 499 2.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 409 - 465 2.4e-08 Pentatricopeptide repeat domain
TPR_24 PF23276 416 - 518 3.4e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 418 - 449 1e-09 PPR repeat
PPR PF01535 424 - 454 2.6e-06 PPR repeat
PPR_2 PF13041 426 - 469 8.3e-13 PPR repeat family
PPR_long PF17177 441 - 600 9.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 447 - 492 1.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 453 - 483 9.7e-10 PPR repeat
PPR_2 PF13041 457 - 493 1e-08 PPR repeat family
PPR PF01535 459 - 489 1.5e-07 PPR repeat
PPR_3 PF13812 479 - 538 3.4e-07 Pentatricopeptide repeat domain
PPR_3 PF13812 550 - 605 1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 562 - 610 1.4e-13 PPR repeat family
PPR PF01535 565 - 594 5.7e-06 PPR repeat
PPR_long PF17177 581 - 730 3.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 587 - 641 9.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 593 - 624 3.2e-08 PPR repeat
TPR_24 PF23276 593 - 693 4.2e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 597 - 645 2.8e-12 PPR repeat family
PPR PF01535 599 - 628 5.5e-06 PPR repeat
PPR_1 PF12854 628 - 659 4.5e-07 PPR repeat
PPR_2 PF13041 631 - 677 1.8e-12 PPR repeat family
PPR PF01535 635 - 663 3.9e-06 PPR repeat
PPR PF01535 670 - 698 7.1e-07 PPR repeat
PPR_2 PF13041 670 - 714 5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1031, 2115
AccB1I GGYRCC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 1605
AccII CGCG 1 cut(s) 1131
AciI CCGC 4 cut(s) 903, 1129, 1491, 1680
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 4 cut(s) 793, 1094, 1312, 1541
AcuI CTGAAG 2 cut(s) 33, 1349
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 2 cut(s) 507, 1489
AfiI CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
AjnI CCWGG 2 cut(s) 614, 1476
AjuI GAANNNNNNNTTGG 4 cut(s) 413, 445, 1588, 1620
Alw21I GWGCWC 1 cut(s) 1810
Alw26I GTCTC 2 cut(s) 109, 605
Alw44I GTGCAC 1 cut(s) 1806
AlwI GGATC 1 cut(s) 410
AoxI GGCC 2 cut(s) 1848, 1911
ApaLI GTGCAC 1 cut(s) 1806
ApeKI GCWGC 2 cut(s) 1952, 2006
ApoI RAATTY 4 cut(s) 793, 1094, 1312, 1541
ArsI GACNNNNNNTTYG 2 cut(s) 2287, 2319
AseI ATTAAT 1 cut(s) 1080
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 5 cut(s) 457, 463, 572, 582, 633
AsuHPI GGTGA 3 cut(s) 211, 1264, 2135
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 1810
BanI GGYRCC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 1810
BbvI GCAGC 2 cut(s) 1964, 1993
BceAI ACGGC 1 cut(s) 1926
BciT130I CCWGG 2 cut(s) 616, 1478
BcnI CCSGG 5 cut(s) 457, 463, 572, 582, 633
BcoDI GTCTC 2 cut(s) 109, 605
BfaI CTAG 3 cut(s) 677, 1979, 2252
BfmI CTRYAG 1 cut(s) 1536
BfoI RGCGCY 1 cut(s) 377
BfuAI ACCTGC 2 cut(s) 1031, 2115
BisI GCNGC 2 cut(s) 1953, 2007
BlpI GCTNAGC 1 cut(s) 1641
BlsI GCNGC 2 cut(s) 1954, 2008
Bme1390I CCNGG 7 cut(s) 457, 463, 572, 582, 616, 633, 1478
Bme18I GGWCC 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 2 cut(s) 375, 1597
BmrFI CCNGG 7 cut(s) 457, 463, 572, 582, 616, 633, 1478
Bpu10I CCTNAGC 1 cut(s) 1956
Bpu1102I GCTNAGC 1 cut(s) 1641
BpuEI CTTGAG 4 cut(s) 707, 730, 1095, 2072
BpuMI CCSGG 5 cut(s) 457, 463, 572, 582, 633
BsaAI YACGTR 2 cut(s) 505, 879
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 3 cut(s) 571, 632, 2146
Bsc4I CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
Bse1I ACTGG 3 cut(s) 222, 1398, 2317
BseBI CCWGG 2 cut(s) 616, 1478
BseDI CCNNGG 3 cut(s) 571, 632, 2146
BseGI GGATG 6 cut(s) 720, 1042, 1212, 1402, 1717, 2269
BseLI CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
BseMII CTCAG 3 cut(s) 398, 471, 1632
BseNI ACTGG 3 cut(s) 222, 1398, 2317
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 1810
BseXI GCAGC 2 cut(s) 1964, 1993
BseYI CCCAGC 1 cut(s) 830
Bsh1236I CGCG 1 cut(s) 1131
BshFI GGCC 2 cut(s) 1850, 1913
BshNI GGYRCC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 1810
BsiSI CCGG 5 cut(s) 457, 462, 571, 581, 632
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 4 cut(s) 462, 638, 1605, 2130
BsmAI GTCTC 2 cut(s) 109, 605
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 5 cut(s) 428, 687, 1537, 1770, 2171
BsnI GGCC 2 cut(s) 1850, 1913
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 1810
Bsp143I GATC 3 cut(s) 415, 746, 1054
Bsp1720I GCTNAGC 1 cut(s) 1641
BspACI CCGC 4 cut(s) 903, 1129, 1491, 1680
BspANI GGCC 2 cut(s) 1850, 1913
BspCNI CTCAG 3 cut(s) 399, 472, 1633
BspFNI CGCG 1 cut(s) 1131
BspLI GGNNCC 2 cut(s) 375, 1597
BspMI ACCTGC 2 cut(s) 1031, 2115
BspPI GGATC 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 605
BsrI ACTGG 3 cut(s) 222, 1398, 2317
BssECI CCNNGG 3 cut(s) 571, 632, 2146
BssMI GATC 3 cut(s) 415, 746, 1054
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 2146
Bst2UI CCWGG 2 cut(s) 616, 1478
Bst4CI ACNGT 2 cut(s) 491, 933
Bst6I CTCTTC 1 cut(s) 1629
BstACI GRCGYC 1 cut(s) 374
BstBAI YACGTR 2 cut(s) 505, 879
BstC8I GCNNGC 3 cut(s) 1886, 2069, 2112
BstDEI CTNAG 6 cut(s) 407, 480, 1518, 1641, 1956, 2306
BstF5I GGATG 6 cut(s) 720, 1042, 1212, 1402, 1717, 2269
BstFNI CGCG 1 cut(s) 1131
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 3 cut(s) 418, 749, 1057
BstMAI GTCTC 2 cut(s) 109, 605
BstMBI GATC 3 cut(s) 415, 746, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 682, 742, 888, 2107
BstNI CCWGG 2 cut(s) 616, 1478
BstNSI RCATGY 2 cut(s) 2071, 2114
BstSCI CCNGG 7 cut(s) 455, 461, 570, 580, 614, 631, 1476
BstSFI CTRYAG 1 cut(s) 1536
BstSLI GKGCMC 1 cut(s) 1810
BstUI CGCG 1 cut(s) 1131
BstV1I GCAGC 2 cut(s) 1964, 1993
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 2 cut(s) 1850, 1913
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 6 cut(s) 720, 1042, 1212, 1402, 1717, 2269
BtsIMutI CAGTG 2 cut(s) 1325, 1660
BveI ACCTGC 2 cut(s) 1031, 2115
Cac8I GCNNGC 3 cut(s) 1886, 2069, 2112
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 459
CpoI CGGWCCG 1 cut(s) 459
Csp6I GTAC 2 cut(s) 506, 1488
CspCI CAANNNNNGTGG 4 cut(s) 77, 112, 1651, 1686
CspI CGGWCCG 1 cut(s) 459
CviAII CATG 7 cut(s) 185, 539, 1240, 1502, 2042, 2068, 2111
CviQI GTAC 2 cut(s) 506, 1488
DdeI CTNAG 6 cut(s) 407, 480, 1518, 1641, 1956, 2306
DinI GGCGCC 1 cut(s) 375
DpnI GATC 3 cut(s) 417, 748, 1056
DpnII GATC 3 cut(s) 415, 746, 1054
DraI TTTAAA 1 cut(s) 1573
Eam1104I CTCTTC 1 cut(s) 1629
EarI CTCTTC 1 cut(s) 1629
Eco130I CCWWGG 1 cut(s) 2146
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 459
Eco57I CTGAAG 2 cut(s) 33, 1349
EcoRI GAATTC 1 cut(s) 1541
EcoRII CCWGG 2 cut(s) 614, 1476
EcoT14I CCWWGG 1 cut(s) 2146
EcoT22I ATGCAT 2 cut(s) 163, 2116
EgeI GGCGCC 1 cut(s) 375
EheI GGCGCC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 2146
FaeI CATG 7 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114
FalI AAGNNNNNCTT 2 cut(s) 2160, 2192
FaqI GGGAC 1 cut(s) 347
FatI CATG 7 cut(s) 184, 538, 1239, 1501, 2041, 2067, 2110
Fnu4HI GCNGC 2 cut(s) 1953, 2007
FokI GGATG 6 cut(s) 727, 1049, 1219, 1409, 1724, 2276
Fsp4HI GCNGC 2 cut(s) 1953, 2007
FspBI CTAG 3 cut(s) 677, 1979, 2252
GlaI GCGC 1 cut(s) 375
GluI GCNGC 2 cut(s) 1953, 2007
GsaI CCCAGC 1 cut(s) 834
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 2 cut(s) 1850, 1913
HapII CCGG 5 cut(s) 457, 462, 571, 581, 632
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 7 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HindIII AAGCTT 3 cut(s) 910, 1113, 2058
HinfI GANTC 7 cut(s) 102, 299, 307, 482, 1007, 1993, 2215
HpaII CCGG 5 cut(s) 457, 462, 571, 581, 632
HphI GGTGA 3 cut(s) 211, 1264, 2135
Hpy166II GTNNAC 5 cut(s) 219, 502, 1049, 1272, 1808
Hpy188I TCNGA 2 cut(s) 1337, 2154
Hpy188III TCNNGA 9 cut(s) 269, 281, 709, 1461, 1546, 1723, 1997, 2051, 2207
Hpy8I GTNNAC 5 cut(s) 219, 502, 1049, 1272, 1808
HpyAV CCTTC 9 cut(s) 122, 781, 852, 881, 1027, 1196, 1201, 1543, 2188
HpyCH4III ACNGT 2 cut(s) 491, 933
HpyCH4IV ACGT 4 cut(s) 504, 878, 1169, 1178
HpyF10VI GCNNNNNNNGC 4 cut(s) 682, 742, 888, 2107
HpyF3I CTNAG 6 cut(s) 407, 480, 1518, 1641, 1956, 2306
HpySE526I ACGT 4 cut(s) 504, 878, 1169, 1178
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 7 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114
HspAI GCGC 1 cut(s) 374
KasI GGCGCC 1 cut(s) 373
Kzo9I GATC 3 cut(s) 415, 746, 1054
LmnI GCTCC 3 cut(s) 1845, 1960, 2098
Lsp1109I GCAGC 2 cut(s) 1964, 1993
MaeI CTAG 3 cut(s) 677, 1979, 2252
MaeII ACGT 4 cut(s) 504, 878, 1169, 1178
MaeIII GTNAC 5 cut(s) 253, 955, 1375, 1584, 1795
MalI GATC 3 cut(s) 417, 748, 1056
MboI GATC 3 cut(s) 415, 746, 1054
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 1810
Mly113I GGCGCC 1 cut(s) 374
MlyI GAGTC 3 cut(s) 111, 316, 491
MmeI TCCRAC 2 cut(s) 973, 1899
Mph1103I ATGCAT 2 cut(s) 163, 2116
MslI CAYNNNNRTG 1 cut(s) 1506
MspI CCGG 5 cut(s) 457, 462, 571, 581, 632
MspR9I CCNGG 7 cut(s) 457, 463, 572, 582, 616, 633, 1478
Mva1269I GAATGC 5 cut(s) 428, 687, 1537, 1770, 2171
MvaI CCWGG 2 cut(s) 616, 1478
MvnI CGCG 1 cut(s) 1131
MwoI GCNNNNNNNGC 4 cut(s) 682, 742, 888, 2107
NarI GGCGCC 1 cut(s) 374
NciI CCSGG 5 cut(s) 457, 463, 572, 582, 633
NdeII GATC 3 cut(s) 415, 746, 1054
NlaIII CATG 7 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114
NlaIV GGNNCC 2 cut(s) 375, 1597
NmuCI GTSAC 2 cut(s) 253, 955
NsiI ATGCAT 2 cut(s) 163, 2116
NspI RCATGY 2 cut(s) 2071, 2114
PaeI GCATGC 2 cut(s) 2071, 2114
PcsI WCGNNNNNNNCGW 1 cut(s) 1175
PctI GAATGC 5 cut(s) 428, 687, 1537, 1770, 2171
PfeI GAWTC 4 cut(s) 299, 1007, 1993, 2215
PflFI GACNNNGTC 1 cut(s) 1870
PflMI CCANNNNNTGG 1 cut(s) 1605
PkrI GCNGC 2 cut(s) 1954, 2008
PleI GAGTC 3 cut(s) 110, 315, 490
PluTI GGCGCC 1 cut(s) 377
PpsI GAGTC 3 cut(s) 110, 315, 490
Ppu21I YACGTR 2 cut(s) 505, 879
PshBI ATTAAT 1 cut(s) 1080
Psp6I CCWGG 2 cut(s) 614, 1476
PspFI CCCAGC 1 cut(s) 830
PspGI CCWGG 2 cut(s) 614, 1476
PspN4I GGNNCC 2 cut(s) 375, 1597
PspPI GGNCC 1 cut(s) 459
PsuI RGATCY 1 cut(s) 415
PsyI GACNNNGTC 1 cut(s) 1870
RsaI GTAC 2 cut(s) 507, 1489
RsaNI GTAC 2 cut(s) 506, 1488
RseI CAYNNNNRTG 1 cut(s) 1506
Rsr2I CGGWCCG 1 cut(s) 459
RsrII CGGWCCG 1 cut(s) 459
SatI GCNGC 2 cut(s) 1953, 2007
Sau3AI GATC 3 cut(s) 415, 746, 1054
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 3 cut(s) 111, 316, 491
ScrFI CCNGG 7 cut(s) 457, 463, 572, 582, 616, 633, 1478
SduI GDGCHC 1 cut(s) 1810
SfcI CTRYAG 1 cut(s) 1536
SfoI GGCGCC 1 cut(s) 375
SinI GGWCC 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 1506
SmlI CTYRAG 4 cut(s) 686, 709, 1110, 2051
SmoI CTYRAG 4 cut(s) 686, 709, 1110, 2051
SphI GCATGC 2 cut(s) 2071, 2114
SsiI CCGC 4 cut(s) 903, 1129, 1491, 1680
SspDI GGCGCC 1 cut(s) 373
SspI AATATT 2 cut(s) 1372, 1780
SspMI CTAG 3 cut(s) 677, 1979, 2252
StyD4I CCNGG 7 cut(s) 455, 461, 570, 580, 614, 631, 1476
StyI CCWWGG 1 cut(s) 2146
TaaI ACNGT 2 cut(s) 491, 933
TaiI ACGT 4 cut(s) 507, 881, 1172, 1181
TaqI TCGA 2 cut(s) 115, 310
TfiI GAWTC 4 cut(s) 299, 1007, 1993, 2215
TscAI CASTG 2 cut(s) 1332, 1660
TseFI GTSAC 2 cut(s) 253, 955
TseI GCWGC 2 cut(s) 1952, 2006
Tsp45I GTSAC 2 cut(s) 253, 955
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 2 cut(s) 1332, 1660
Tth111I GACNNNGTC 1 cut(s) 1870
Van91I CCANNNNNTGG 1 cut(s) 1605
VneI GTGCAC 1 cut(s) 1806
VpaK11BI GGWCC 1 cut(s) 459
VspI ATTAAT 1 cut(s) 1080
XapI RAATTY 4 cut(s) 793, 1094, 1312, 1541
XceI RCATGY 2 cut(s) 2071, 2114
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 3 cut(s) 677, 1979, 2252
Zsp2I ATGCAT 2 cut(s) 163, 2116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.