Rmu_sc0007511.1_g000004

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007511.1
Physical Location & Seq
Reverse (-)
19650 .. 22019
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007511.1_g000004.1.cds

Sequence Viewer

Length: 2370 bp
atgaagccaactgaagaagaagaagaagaagaagaagaagaagaaggcttctttctattcatcatcatcttccccaagatgctgttacttcttcgcacactgttccacacaaggtgcagagtctcctcccttcgagtaagacctaaatacccatcatctaattcctgctttatcaatgcatcatcatcactatcatcatcgcatggttctcttatagcttcccctttggtttggttcaccagtttcttctgtattattcgcttcccatttgtcactaaatccaatcctgatatggttcaaggaaacttaaatgtagaatctttgagtcgaattgttcagctggactattgggacgaccccagaattgttagtgtgtttggttcggcattggcgccgatttgggtgtcaaggtttttggtggaactgagaaaagatcccaacttggcattcaagttgttcaaatgggcgaaaacccggaccgggttttgccacactactgagtcttattgtattttggttcacatactttttgttggtagaatgtatattgatgcccatgaggttattagagagttggtgttgttgagccgggggttgccgggttttgatgtgtttgatgggctgtggcagaccaggaatgtttgtcgtccggggtttggagtgtttgatgccttgtttagtgttttggttgagcttggaatgcttgagaaagcaagtgagtgcttcttgaggatgaggaagtgtagagttttgccgaaagtgcgatcttgtaatgcccttttgcacgggctttcgaagtcagggaaggggaatttgtcaaggcagttttttaaggatatgcttggggctgggatttccccttctgttttcacattcaatataatgattggatatacgtgcaaagaaggcgatttggaaaccgcaagaagcttgtttgcacaaatgaaacagttgggtcttacacctgatattgtgacatataattctcttattgacggatatggaaaggttggattattagatgattcagtttgcatatttgaagaaatgaaggatgtaggttgtgaacctgatctaataacatacaatgctttgattaattgtttttgtaaatttgaaaaaatgcctcaagctttcaattttctccgcgagatgatgagtaatggcttgaaaccgaatgtcataacgtatagcacgttgattgatgccttctgtaaggaagggatgatgcaagaggcaattaagatttttatagacatgaaacgagttggtctttcagctaatgagttcacctatacttctttgattgatgcaagttgtaaagctggaaatttgagccaagcactgaagttcagaaatgagatgttagaggcaggagttagtttcaatattgtaacttatacagctctactggatgggctgtgtgaagatgggaagatggaggaagcagaagaagtttttagggaggtgctaaactctggaataattcctaaccaggaaatatgtaccgcccttgttcatgggtatgttaagactaagaagatggagaatgctacagaattcttgaaggatatcaaggggaaaggctttaaaccagatttgttactttttgggaccatcatttgggtcctttgctctcaaaataaggttgaagaggctgagcttgtaaccagtgaaatcaaggattgtggtttaactgcaaatcatttcatttacacaacacttatggatgcttatttcaagaaaggaaacaccaatgaggcactcaatgttttacagcgaatgctggacaacaatattgaggttagtgtggtaacatattgtgcactaattgatggtttgtgcaaaaaggggttgctccaagaggccattacttattttaggacgatgtccaacattggcttgcaacccaatgttgcagtttttacggccttaattgatggtctgtgtaaaggtagttgcattgaagcagctaaggagctgtttaatgaaatgctagacaagggtatgattccagataaagctgcttacaccactctaatagatggaaacttaaagcatggaaatcttgaggaagctttgagcatgcacaggagaatgaaagaaattggtatggagcttgacctgcatgcatatacttccttgatttgggggctttctcaccttggtcagatgcaacaagcaaaagcattcctggatgagatgattgggaagggtataattcctgatgagattctcattgtttgtcttgtaagaaaatactatgagctagggaatgtggatgaagccatcaagttgcagactgaatggcaaaacaggggtctaagaactggaacttctaattttgtgtttcctaatgcaagaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

789

Amino Acids

88.94

Weight (kDa)

5.75

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011145)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2133
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 1623
AccII CGCG 1 cut(s) 1149
AciI CCGC 3 cut(s) 921, 1147, 1509
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 4 cut(s) 811, 1112, 1330, 1559
AcuI CTGAAG 2 cut(s) 33, 1367
AcyI GRCGYC 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 1 cut(s) 1507
AfiI CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
AjnI CCWGG 3 cut(s) 632, 1494, 2193
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
Alw21I GWGCWC 1 cut(s) 1828
Alw26I GTCTC 1 cut(s) 127
Alw44I GTGCAC 1 cut(s) 1824
AlwI GGATC 1 cut(s) 428
AoxI GGCC 2 cut(s) 1866, 1929
ApaLI GTGCAC 1 cut(s) 1824
ApeKI GCWGC 2 cut(s) 1970, 2024
ApoI RAATTY 4 cut(s) 811, 1112, 1330, 1559
ArsI GACNNNNNNTTYG 2 cut(s) 2305, 2337
AseI ATTAAT 1 cut(s) 1098
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 477, 1614, 1627
AsuC2I CCSGG 5 cut(s) 475, 481, 590, 600, 651
AsuHPI GGTGA 3 cut(s) 229, 1282, 2153
AsuII TTCGAA 1 cut(s) 794
AvaII GGWCC 3 cut(s) 477, 1614, 1627
BaeGI GKGCMC 1 cut(s) 1828
BanI GGYRCC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 1828
BbvI GCAGC 2 cut(s) 1982, 2011
BceAI ACGGC 1 cut(s) 1944
BciT130I CCWGG 3 cut(s) 634, 1496, 2195
BcnI CCSGG 5 cut(s) 475, 481, 590, 600, 651
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 1997, 2270
BfmI CTRYAG 1 cut(s) 1554
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 2133
BisI GCNGC 2 cut(s) 1971, 2025
BlpI GCTNAGC 1 cut(s) 1659
BlsI GCNGC 2 cut(s) 1972, 2026
Bme1390I CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
Bme18I GGWCC 3 cut(s) 477, 1614, 1627
BmgT120I GGNCC 3 cut(s) 477, 1614, 1627
BmiI GGNNCC 3 cut(s) 393, 1615, 1628
BmrFI CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
BmsI GCATC 9 cut(s) 69, 188, 541, 658, 1195, 1218, 1300, 1720, 2163
Bpu10I CCTNAGC 1 cut(s) 1974
Bpu1102I GCTNAGC 1 cut(s) 1659
Bpu14I TTCGAA 1 cut(s) 794
BpuEI CTTGAG 4 cut(s) 725, 748, 1113, 2090
BpuMI CCSGG 5 cut(s) 475, 481, 590, 600, 651
BsaAI YACGTR 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 589, 650, 2164
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
Bse1I ACTGG 4 cut(s) 240, 1416, 1671, 2335
BseBI CCWGG 3 cut(s) 634, 1496, 2195
BseDI CCNNGG 3 cut(s) 589, 650, 2164
BseGI GGATG 7 cut(s) 738, 1060, 1230, 1420, 1735, 2203, 2287
BseLI CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
BseMII CTCAG 3 cut(s) 416, 489, 1650
BseNI ACTGG 4 cut(s) 240, 1416, 1671, 2335
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 1828
BseXI GCAGC 2 cut(s) 1982, 2011
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 1149
BshFI GGCC 2 cut(s) 1868, 1931
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 1828
BsiSI CCGG 5 cut(s) 475, 480, 589, 599, 650
BslFI GGGAC 2 cut(s) 365, 1627
BslI CCNNNNNNNGG 4 cut(s) 480, 656, 1623, 2148
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 365, 1627
BsmI GAATGC 5 cut(s) 446, 705, 1555, 1788, 2189
BsnI GGCC 2 cut(s) 1868, 1931
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 1828
Bsp143I GATC 3 cut(s) 433, 764, 1072
Bsp1720I GCTNAGC 1 cut(s) 1659
BspACI CCGC 3 cut(s) 921, 1147, 1509
BspANI GGCC 2 cut(s) 1868, 1931
BspCNI CTCAG 3 cut(s) 417, 490, 1651
BspFNI CGCG 1 cut(s) 1149
BspLI GGNNCC 3 cut(s) 393, 1615, 1628
BspMI ACCTGC 1 cut(s) 2133
BspPI GGATC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 391
BsrI ACTGG 4 cut(s) 240, 1416, 1671, 2335
BssECI CCNNGG 3 cut(s) 589, 650, 2164
BssMI GATC 3 cut(s) 433, 764, 1072
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 2164
Bst2UI CCWGG 3 cut(s) 634, 1496, 2195
Bst4CI ACNGT 2 cut(s) 102, 951
Bst6I CTCTTC 1 cut(s) 1647
BstACI GRCGYC 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 897
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 3 cut(s) 1904, 2087, 2130
BstDEI CTNAG 6 cut(s) 425, 498, 1536, 1659, 1974, 2324
BstF5I GGATG 7 cut(s) 738, 1060, 1230, 1420, 1735, 2203, 2287
BstFNI CGCG 1 cut(s) 1149
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 3 cut(s) 436, 767, 1075
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 3 cut(s) 433, 764, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 700, 760, 906, 2125
BstNI CCWGG 3 cut(s) 634, 1496, 2195
BstNSI RCATGY 2 cut(s) 2089, 2132
BstSCI CCNGG 8 cut(s) 473, 479, 588, 598, 632, 649, 1494, 2193
BstSFI CTRYAG 1 cut(s) 1554
BstSLI GKGCMC 1 cut(s) 1828
BstUI CGCG 1 cut(s) 1149
BstV1I GCAGC 2 cut(s) 1982, 2011
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 2 cut(s) 1868, 1931
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 7 cut(s) 738, 1060, 1230, 1420, 1735, 2203, 2287
BtsIMutI CAGTG 3 cut(s) 98, 1343, 1678
BveI ACCTGC 1 cut(s) 2133
Cac8I GCNNGC 3 cut(s) 1904, 2087, 2130
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 3 cut(s) 477, 1614, 1627
CpoI CGGWCCG 1 cut(s) 477
Csp6I GTAC 1 cut(s) 1506
CspCI CAANNNNNGTGG 2 cut(s) 1669, 1704
CspI CGGWCCG 1 cut(s) 477
CviAII CATG 7 cut(s) 203, 557, 1258, 1520, 2060, 2086, 2129
CviQI GTAC 1 cut(s) 1506
DdeI CTNAG 6 cut(s) 425, 498, 1536, 1659, 1974, 2324
DinI GGCGCC 1 cut(s) 393
DpnI GATC 3 cut(s) 435, 766, 1074
DpnII GATC 3 cut(s) 433, 764, 1072
DraI TTTAAA 1 cut(s) 1591
DraIII CACNNNGTG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 1647
EarI CTCTTC 1 cut(s) 1647
Eco130I CCWWGG 1 cut(s) 2164
Eco32I GATATC 1 cut(s) 1573
Eco47I GGWCC 3 cut(s) 477, 1614, 1627
Eco57I CTGAAG 2 cut(s) 33, 1367
EcoO109I RGGNCCY 1 cut(s) 1627
EcoRI GAATTC 1 cut(s) 1559
EcoRII CCWGG 3 cut(s) 632, 1494, 2193
EcoRV GATATC 1 cut(s) 1573
EcoT14I CCWWGG 1 cut(s) 2164
EcoT22I ATGCAT 2 cut(s) 181, 2134
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 2164
FaeI CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
FaqI GGGAC 2 cut(s) 365, 1627
FatI CATG 7 cut(s) 202, 556, 1257, 1519, 2059, 2085, 2128
Fnu4HI GCNGC 2 cut(s) 1971, 2025
FokI GGATG 7 cut(s) 745, 1067, 1237, 1427, 1742, 2210, 2294
Fsp4HI GCNGC 2 cut(s) 1971, 2025
FspBI CTAG 2 cut(s) 1997, 2270
GlaI GCGC 1 cut(s) 393
GluI GCNGC 2 cut(s) 1971, 2025
GsaI CCCAGC 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 2 cut(s) 1868, 1931
HapII CCGG 5 cut(s) 475, 480, 589, 599, 650
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 3 cut(s) 928, 1131, 2076
HinfI GANTC 7 cut(s) 120, 317, 325, 500, 1025, 2011, 2233
HpaII CCGG 5 cut(s) 475, 480, 589, 599, 650
HphI GGTGA 3 cut(s) 229, 1282, 2153
Hpy166II GTNNAC 5 cut(s) 237, 520, 1067, 1290, 1826
Hpy188I TCNGA 2 cut(s) 1355, 2172
Hpy188III TCNNGA 8 cut(s) 287, 727, 1479, 1564, 1741, 2015, 2069, 2225
Hpy8I GTNNAC 5 cut(s) 237, 520, 1067, 1290, 1826
HpyCH4III ACNGT 2 cut(s) 102, 951
HpyCH4IV ACGT 3 cut(s) 896, 1187, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 700, 760, 906, 2125
HpyF3I CTNAG 6 cut(s) 425, 498, 1536, 1659, 1974, 2324
HpySE526I ACGT 3 cut(s) 896, 1187, 1196
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
HspAI GCGC 1 cut(s) 392
KasI GGCGCC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 433, 764, 1072
LmnI GCTCC 3 cut(s) 1863, 1978, 2116
Lsp1109I GCAGC 2 cut(s) 1982, 2011
LweI GCATC 9 cut(s) 69, 188, 541, 658, 1195, 1218, 1300, 1720, 2163
MaeI CTAG 2 cut(s) 1997, 2270
MaeII ACGT 3 cut(s) 896, 1187, 1196
MaeIII GTNAC 7 cut(s) 84, 271, 973, 1393, 1602, 1666, 1813
MalI GATC 3 cut(s) 435, 766, 1074
MboI GATC 3 cut(s) 433, 764, 1072
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 1828
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 3 cut(s) 129, 334, 509
MmeI TCCRAC 2 cut(s) 991, 1917
Mph1103I ATGCAT 2 cut(s) 181, 2134
MslI CAYNNNNRTG 1 cut(s) 1524
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 5 cut(s) 475, 480, 589, 599, 650
MspR9I CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
Mva1269I GAATGC 5 cut(s) 446, 705, 1555, 1788, 2189
MvaI CCWGG 3 cut(s) 634, 1496, 2195
MvnI CGCG 1 cut(s) 1149
MwoI GCNNNNNNNGC 4 cut(s) 700, 760, 906, 2125
NarI GGCGCC 1 cut(s) 392
NciI CCSGG 5 cut(s) 475, 481, 590, 600, 651
NdeII GATC 3 cut(s) 433, 764, 1072
NlaIII CATG 7 cut(s) 206, 560, 1261, 1523, 2063, 2089, 2132
NlaIV GGNNCC 3 cut(s) 393, 1615, 1628
NmuCI GTSAC 2 cut(s) 271, 973
NsiI ATGCAT 2 cut(s) 181, 2134
NspI RCATGY 2 cut(s) 2089, 2132
NspV TTCGAA 1 cut(s) 794
PaeI GCATGC 2 cut(s) 2089, 2132
PcsI WCGNNNNNNNCGW 1 cut(s) 1193
PctI GAATGC 5 cut(s) 446, 705, 1555, 1788, 2189
PfeI GAWTC 4 cut(s) 317, 1025, 2011, 2233
PflFI GACNNNGTC 1 cut(s) 1888
PflMI CCANNNNNTGG 1 cut(s) 1623
PfoI TCCNGGA 1 cut(s) 2193
PkrI GCNGC 2 cut(s) 1972, 2026
PleI GAGTC 3 cut(s) 128, 333, 508
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 3 cut(s) 128, 333, 508
Ppu21I YACGTR 1 cut(s) 897
PpuMI RGGWCCY 1 cut(s) 1627
PshBI ATTAAT 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 1627
Psp6I CCWGG 3 cut(s) 632, 1494, 2193
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 3 cut(s) 632, 1494, 2193
PspN4I GGNNCC 3 cut(s) 393, 1615, 1628
PspPI GGNCC 3 cut(s) 477, 1614, 1627
PspPPI RGGWCCY 1 cut(s) 1627
PsuI RGATCY 1 cut(s) 433
PsyI GACNNNGTC 1 cut(s) 1888
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 1 cut(s) 1507
RsaNI GTAC 1 cut(s) 1506
RseI CAYNNNNRTG 1 cut(s) 1524
Rsr2I CGGWCCG 1 cut(s) 477
RsrII CGGWCCG 1 cut(s) 477
SatI GCNGC 2 cut(s) 1971, 2025
Sau3AI GATC 3 cut(s) 433, 764, 1072
Sau96I GGNCC 3 cut(s) 477, 1614, 1627
SchI GAGTC 3 cut(s) 129, 334, 509
ScrFI CCNGG 8 cut(s) 475, 481, 590, 600, 634, 651, 1496, 2195
SduI GDGCHC 1 cut(s) 1828
SfaNI GCATC 9 cut(s) 69, 188, 541, 658, 1195, 1218, 1300, 1720, 2163
SfcI CTRYAG 1 cut(s) 1554
SfoI GGCGCC 1 cut(s) 393
SfuI TTCGAA 1 cut(s) 794
SinI GGWCC 3 cut(s) 477, 1614, 1627
SmiMI CAYNNNNRTG 1 cut(s) 1524
SmlI CTYRAG 4 cut(s) 704, 727, 1128, 2069
SmoI CTYRAG 4 cut(s) 704, 727, 1128, 2069
SphI GCATGC 2 cut(s) 2089, 2132
SsiI CCGC 3 cut(s) 921, 1147, 1509
SspDI GGCGCC 1 cut(s) 391
SspI AATATT 2 cut(s) 1390, 1798
SspMI CTAG 2 cut(s) 1997, 2270
StyD4I CCNGG 8 cut(s) 473, 479, 588, 598, 632, 649, 1494, 2193
StyI CCWWGG 1 cut(s) 2164
TaaI ACNGT 2 cut(s) 102, 951
TaiI ACGT 3 cut(s) 899, 1190, 1199
TaqI TCGA 3 cut(s) 133, 328, 794
TfiI GAWTC 4 cut(s) 317, 1025, 2011, 2233
TscAI CASTG 3 cut(s) 105, 1350, 1678
TseFI GTSAC 2 cut(s) 271, 973
TseI GCWGC 2 cut(s) 1970, 2024
Tsp45I GTSAC 2 cut(s) 271, 973
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 3 cut(s) 105, 1350, 1678
Tth111I GACNNNGTC 1 cut(s) 1888
Van91I CCANNNNNTGG 1 cut(s) 1623
VneI GTGCAC 1 cut(s) 1824
VpaK11BI GGWCC 3 cut(s) 477, 1614, 1627
VspI ATTAAT 1 cut(s) 1098
XapI RAATTY 4 cut(s) 811, 1112, 1330, 1559
XceI RCATGY 2 cut(s) 2089, 2132
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 2 cut(s) 1997, 2270
Zsp2I ATGCAT 2 cut(s) 181, 2134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.