FvH4_4g36310

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011145
Physical Location & Seq
Reverse (-)
33298312 .. 33301925
3614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36310.t2

Sequence Viewer

Length: 2283 bp
ATGAACCCAACTGAAGACCCACAAGCCTTCTTCTTCTTCTTCATCTTCTCCAAGATGCTGTTGTTTCTTCGCAATCTGTTCCACACAAGTTGCAGAGTCTCCTCTCTTCGAGTAAGACCCAAATACCCATCATCTTCATCATTATCTAATTCCTCTTTTATCAATGCATCATCTTCCCCTTTGGTTTGGTTCACCAGTTTCTTCTGTATTATTCGCTTCCCGTTTGTCACTAAATCCAATCCTGAAATGCTTCCTCAAAACTTAAATGTTGAATCTTTGAGTCAAATTGTTCAGCATGACTATTGGGACGATCCCAGAATCGTCAATGTGTTTGGTTCAGCCTTGGCGCCCATTTGGGTCTCCAGGTTTTTGGTTGAGCTGAGGAAAGATCCCAACTTGGCATTCAAGTTGTTTAAGTGGGCGAAAACCCGTACCGGGTTTCGCCACACTACTGAGTCTTATTGTGTTTTGGTTCATGTATTGTTTGTTGGTAGAATGTACATTGATGCCCATGAGGCTATTAGGGAGTTGGTATTGTTGAGCCGGGGGTTGCCGGGTTTCGATGTGTTTGATGGGCTGTGGGAGACCAGGAATGTGTGCCGGCCGGGGTTTGGAGTGTTTGATGCCTTGTTTAGTGTTTTGGTTGAGCTAGGGATGCTGGAGAAAGCAAATGAGTGCTTCTTGAGGATGAGGAAGTGTAGGGTTTTGCCAAAGGTGAGGTCTTGTAATGCCCTTTTGCACGGGCTTTCCAAGTCAGGGAAGGGGGATTTGTCGAGGCGGTTTTTTAAGGATATGCTTGGGGCTGGGGTTTCGCCTTCTGTTTTCACTTTCAATATAATGATTGGATATACATGCAAAGGAGGCGATATGGAAACTGCAAGATGCTTGTTTGCTCAAATGAAACAGTTGGGTCTTACACCTGATATTGTGACATATAATTCTCTTATTGATGGATATGGAAAGGTTGGACTATTAGATGATTCAGTGTGCATATTTGAAGAAATGAAGGATGCAGGTTGTGAACCTGACCTAATAACATACAATGCTTTGATTAATTGTTTTTGTAAATTTGAAAAGATGCCTCAAGCTTTTAATTTTCTCCGGGAGATGATGAGAAATGGCTTGAAACCGAATGTCATAACCTATAGCACTTTGATTGATGCCTTCTGTAAGGAAGGGATGATGCTAGAGGCAATTAAGATTTTTATAGACATGAAACGAGTTGGTCTCTCAGCTAATGAATTCACCTATACTTCTTTGATTGATGCAAGTTGTAAAGCTGGAAATTTGAGCCAAGCACTGAAGTTCAGAAATGAGATGTTAGATGCAGGAGTTAGCTTGAACATTGTAACTTATACAGCTCTACTGGATGGGCTGTGTGAAAATGGGAAGCTGGAGGAAGCAGAAGGAGTTTTTAATGAGGTGATAAACTCTGGGATAATTCCGAACCAGGAAATATGTACTGCTCTTGTTCATGGGTATGTTAAGACTAAGAAGATGGAGAATGCTTCAGAATTCTTAAAGGAAATCAGGGGGAAAGCCTTTAAACCAGATTTGTTACTTTATGGAACCATCATTTGGGTCCTGTGCTCTCAAAATAAGGTTGAAGAGGCTGTGCTTGTGATCAGTGAAATCAAGGATTGTGGTTTAAAGGCAAATCATTTCATTTATACAACGGTTATGGATGCTTATTTCAAGAGAGGAAACACCAATGAGGCACTCAATGTTTTACAGCTCATGCTGGACAATGATATCGAGGTTAGTGTCGTAACATATTGTGCACTAATAGATGGTTTGTGCAAAAAGGGGTTGGTCCAAGAGGCCATCAATTATTTTCAGAAGATGTCCGACATTGGTTTGCAACCCAATGTTGCACTCTATACAGCCTTGATTGATGGTCTTTGTAAAAGTAATTGCATTGAAGCAGCTAAGGAGCTATTTAATGAAATGCTAGACAAGTGTATGATTCCAGATAAAACTGCTTACACCGCTCTAATAGATGGGTACTTAAAGCATGGAAATCTTGAGGAAGCTTTGAGCATGCATAGGAGAATGAAAGAAATTGGTATGGATCTTGATCTGCATGCATATACTTCCTTGATTTGGGGGCTTTCTCACCTTCGTCAGATGCAACAAGCGAAAGCATTCCTTGATGAGATGATTAGGAAGGGTATAATTCCTGATGAGGTTCTCATTGTTTCTCTTGTAAGAAAATACTATGAGCTAGGGAATGTGGATGAAGCCATCGAGTTGCAGAATGAATTGCGAAACAGGGGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

761

Amino Acids

85.96

Weight (kDa)

6.37

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 237 - 286 2.2e-10 PPR repeat family
PPR_2 PF13041 272 - 321 1.5e-15 PPR repeat family
PPR_3 PF13812 296 - 354 3e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 304 - 336 8.3e-10 PPR repeat
PPR_2 PF13041 307 - 356 5e-18 PPR repeat family
PPR PF01535 310 - 340 9.7e-09 PPR repeat
PPR_long PF17177 325 - 429 6.8e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 339 - 370 1.2e-10 PPR repeat
PPR_2 PF13041 342 - 391 3.1e-18 PPR repeat family
PPR PF01535 345 - 375 1.6e-06 PPR repeat
PPR_3 PF13812 367 - 423 4.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 373 - 406 6.8e-13 PPR repeat
PPR PF01535 380 - 409 1.2e-08 PPR repeat
PPR_2 PF13041 380 - 426 6.4e-15 PPR repeat family
PPR_long PF17177 397 - 473 7.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 409 - 440 3.5e-09 PPR repeat
PPR PF01535 415 - 445 5e-06 PPR repeat
PPR_2 PF13041 418 - 460 1.6e-11 PPR repeat family
PPR_long PF17177 430 - 583 9.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 438 - 483 8.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 444 - 474 1.2e-09 PPR repeat
PPR_2 PF13041 448 - 484 1.9e-08 PPR repeat family
PPR PF01535 450 - 480 1e-07 PPR repeat
TPR_24 PF23276 540 - 649 3.2e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 541 - 597 4.5e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 553 - 601 4.1e-12 PPR repeat family
PPR_long PF17177 566 - 720 2e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 585 - 615 1.1e-08 PPR repeat
PPR_2 PF13041 588 - 636 4.8e-13 PPR repeat family
PPR PF01535 590 - 619 4e-07 PPR repeat
PPR_1 PF12854 619 - 650 1e-08 PPR repeat
PPR_2 PF13041 622 - 669 3.5e-12 PPR repeat family
PPR PF01535 627 - 653 1.5e-06 PPR repeat
PPR_2 PF13041 657 - 705 8.6e-10 PPR repeat family
PPR PF01535 661 - 689 2.3e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1004
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 1578
AccBSI CCGCTC 1 cut(s) 1991
AciI CCGC 2 cut(s) 778, 1989
AclWI GGATC 3 cut(s) 305, 383, 2079
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 4 cut(s) 1067, 1241, 1285, 1514
AcuI CTGAAG 3 cut(s) 33, 1322, 1494
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 4 cut(s) 433, 500, 1462, 2006
AfiI CCNNNNNNNGG 5 cut(s) 435, 611, 756, 1578, 2103
AjnI CCWGG 3 cut(s) 362, 587, 1449
AjuI GAANNNNNNNTTGG 4 cut(s) 386, 418, 1561, 1593
Alw21I GWGCWC 2 cut(s) 1592, 1783
Alw26I GTCTC 4 cut(s) 103, 364, 578, 1232
Alw44I GTGCAC 1 cut(s) 1779
AlwI GGATC 3 cut(s) 305, 383, 2079
AoxI GGCC 2 cut(s) 602, 1821
ApaLI GTGCAC 1 cut(s) 1779
ApeKI GCWGC 1 cut(s) 1925
ApoI RAATTY 4 cut(s) 1067, 1241, 1285, 1514
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AseI ATTAAT 1 cut(s) 1053
Asp700I GAANNNNTTC 2 cut(s) 249, 2144
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 1582, 1813
AsuC2I CCSGG 5 cut(s) 436, 545, 555, 606, 1103
AsuHPI GGTGA 5 cut(s) 184, 727, 1237, 1435, 2108
AvaII GGWCC 2 cut(s) 1582, 1813
BaeGI GKGCMC 1 cut(s) 1783
BanI GGYRCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 1592, 1783
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 1937
BciT130I CCWGG 3 cut(s) 364, 589, 1451
BclI TGATCA 1 cut(s) 1623
BcnI CCSGG 5 cut(s) 436, 545, 555, 606, 1103
BcoDI GTCTC 4 cut(s) 103, 364, 578, 1232
BfaI CTAG 4 cut(s) 650, 1187, 1952, 2225
BfmI CTRYAG 1 cut(s) 1144
BfoI RGCGCY 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 1004
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 1 cut(s) 1926
BlsI GCNGC 1 cut(s) 1927
Bme1390I CCNGG 8 cut(s) 364, 436, 545, 555, 589, 606, 1103, 1451
Bme18I GGWCC 2 cut(s) 1582, 1813
BmgT120I GGNCC 2 cut(s) 1582, 1813
BmiI GGNNCC 3 cut(s) 348, 1570, 1583
BmrFI CCNGG 8 cut(s) 364, 436, 545, 555, 589, 606, 1103, 1451
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 1212, 1244
BpmI CTGGAG 3 cut(s) 346, 680, 1415
Bpu10I CCTNAGC 2 cut(s) 380, 1929
BpuEI CTTGAG 3 cut(s) 703, 1068, 2045
BpuMI CCSGG 5 cut(s) 436, 545, 555, 606, 1103
BsaBI GATNNNNATC 1 cut(s) 2076
BsaHI GRCGYC 1 cut(s) 347
BsaI GGTCTC 3 cut(s) 364, 578, 1232
BsaJI CCNNGG 3 cut(s) 342, 544, 605
Bsc4I CCNNNNNNNGG 5 cut(s) 435, 611, 756, 1578, 2103
Bse118I RCCGGY 1 cut(s) 600
Bse1I ACTGG 2 cut(s) 195, 1371
Bse8I GATNNNNATC 1 cut(s) 2076
BseBI CCWGG 3 cut(s) 364, 589, 1451
BseDI CCNNGG 3 cut(s) 342, 544, 605
BseGI GGATG 7 cut(s) 660, 693, 1015, 1185, 1375, 1690, 2242
BseJI GATNNNNATC 1 cut(s) 2076
BseLI CCNNNNNNNGG 5 cut(s) 435, 611, 756, 1578, 2103
BseMII CTCAG 3 cut(s) 371, 444, 1245
BseNI ACTGG 2 cut(s) 195, 1371
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 1783
BseX3I CGGCCG 1 cut(s) 602
BseXI GCAGC 1 cut(s) 1937
BseYI CCCAGC 1 cut(s) 803
Bsh1285I CGRYCG 1 cut(s) 605
BshFI GGCC 2 cut(s) 604, 1823
BshNI GGYRCC 1 cut(s) 346
BsiEI CGRYCG 1 cut(s) 605
BsiHKAI GWGCWC 2 cut(s) 1592, 1783
BsiSI CCGG 6 cut(s) 435, 544, 554, 601, 605, 1102
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 5 cut(s) 435, 611, 756, 1578, 2103
BsmAI GTCTC 4 cut(s) 103, 364, 578, 1232
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 3 cut(s) 401, 1510, 2144
BsnI GGCC 2 cut(s) 604, 1823
Bso31I GGTCTC 3 cut(s) 364, 578, 1232
Bsp1286I GDGCHC 2 cut(s) 1592, 1783
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 5 cut(s) 310, 388, 1623, 2071, 2077
BspACI CCGC 2 cut(s) 778, 1989
BspANI GGCC 2 cut(s) 604, 1823
BspCNI CTCAG 3 cut(s) 372, 445, 1244
BspLI GGNNCC 3 cut(s) 348, 1570, 1583
BspMI ACCTGC 1 cut(s) 1004
BspPI GGATC 3 cut(s) 305, 383, 2079
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 3 cut(s) 364, 578, 1232
BsrBI CCGCTC 1 cut(s) 1991
BsrFI RCCGGY 1 cut(s) 600
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 2 cut(s) 195, 1371
BssAI RCCGGY 1 cut(s) 600
BssECI CCNNGG 3 cut(s) 342, 544, 605
BssMI GATC 5 cut(s) 310, 388, 1623, 2071, 2077
BssNI GRCGYC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 3 cut(s) 364, 589, 1451
Bst4CI ACNGT 2 cut(s) 906, 1678
Bst6I CTCTTC 2 cut(s) 111, 1602
BstACI GRCGYC 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 3 cut(s) 602, 2042, 2085
BstDEI CTNAG 5 cut(s) 380, 453, 1231, 1491, 1929
BstF5I GGATG 7 cut(s) 660, 693, 1015, 1185, 1375, 1690, 2242
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 5 cut(s) 313, 391, 1626, 2074, 2080
BstMAI GTCTC 4 cut(s) 103, 364, 578, 1232
BstMBI GATC 5 cut(s) 310, 388, 1623, 2071, 2077
BstMCI CGRYCG 1 cut(s) 605
BstMWI GCNNNNNNNGC 4 cut(s) 515, 655, 861, 1988
BstNI CCWGG 3 cut(s) 364, 589, 1451
BstNSI RCATGY 3 cut(s) 855, 2044, 2087
BstSCI CCNGG 8 cut(s) 362, 434, 543, 553, 587, 604, 1101, 1449
BstSFI CTRYAG 1 cut(s) 1144
BstSLI GKGCMC 1 cut(s) 1783
BstV1I GCAGC 1 cut(s) 1937
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 388, 2071
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 2 cut(s) 388, 2071
BstZI CGGCCG 1 cut(s) 602
BsuRI GGCC 2 cut(s) 604, 1823
BtsCI GGATG 7 cut(s) 660, 693, 1015, 1185, 1375, 1690, 2242
BtsIMutI CAGTG 3 cut(s) 990, 1298, 1633
BveI ACCTGC 1 cut(s) 1004
Cac8I GCNNGC 3 cut(s) 602, 2042, 2085
CfoI GCGC 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 600
Cfr13I GGNCC 2 cut(s) 1582, 1813
Csp6I GTAC 4 cut(s) 432, 499, 1461, 2005
CspCI CAANNNNNGTGG 4 cut(s) 71, 106, 1624, 1659
CviQI GTAC 4 cut(s) 432, 499, 1461, 2005
DdeI CTNAG 5 cut(s) 380, 453, 1231, 1491, 1929
DinI GGCGCC 1 cut(s) 348
DpnI GATC 5 cut(s) 312, 390, 1625, 2073, 2079
DpnII GATC 5 cut(s) 310, 388, 1623, 2071, 2077
DraI TTTAAA 2 cut(s) 1546, 1650
EaeI YGGCCR 1 cut(s) 602
EagI CGGCCG 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 111, 1602
EarI CTCTTC 2 cut(s) 111, 1602
EclXI CGGCCG 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 3 cut(s) 364, 578, 1232
Eco32I GATATC 1 cut(s) 1753
Eco47I GGWCC 2 cut(s) 1582, 1813
Eco52I CGGCCG 1 cut(s) 602
Eco57I CTGAAG 3 cut(s) 33, 1322, 1494
EcoO109I RGGNCCY 1 cut(s) 1582
EcoRI GAATTC 2 cut(s) 1241, 1514
EcoRII CCWGG 3 cut(s) 362, 587, 1449
EcoRV GATATC 1 cut(s) 1753
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 3 cut(s) 169, 2046, 2089
EgeI GGCGCC 1 cut(s) 348
EheI GGCGCC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 342
FalI AAGNNNNNCTT 2 cut(s) 2133, 2165
FaqI GGGAC 1 cut(s) 320
FbaI TGATCA 1 cut(s) 1623
Fnu4HI GCNGC 1 cut(s) 1926
FokI GGATG 7 cut(s) 667, 700, 1022, 1192, 1382, 1697, 2249
Fsp4HI GCNGC 1 cut(s) 1926
FspBI CTAG 4 cut(s) 650, 1187, 1952, 2225
GlaI GCGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 1926
GsaI CCCAGC 1 cut(s) 807
GsuI CTGGAG 3 cut(s) 346, 680, 1415
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 2 cut(s) 604, 1823
HapII CCGG 6 cut(s) 435, 544, 554, 601, 605, 1102
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 1 cut(s) 347
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HindIII AAGCTT 2 cut(s) 1086, 2031
HinfI GANTC 7 cut(s) 96, 272, 280, 318, 455, 980, 1966
HpaII CCGG 6 cut(s) 435, 544, 554, 601, 605, 1102
HphI GGTGA 5 cut(s) 184, 727, 1237, 1435, 2108
Hpy166II GTNNAC 3 cut(s) 192, 1022, 1781
Hpy188I TCNGA 6 cut(s) 1310, 1446, 1513, 1839, 1849, 2127
Hpy188III TCNNGA 7 cut(s) 242, 682, 1696, 1970, 2024, 2075, 2180
Hpy8I GTNNAC 3 cut(s) 192, 1022, 1781
HpyAV CCTTC 9 cut(s) 37, 754, 825, 1000, 1169, 1174, 1400, 2129, 2161
HpyCH4III ACNGT 2 cut(s) 906, 1678
HpyF10VI GCNNNNNNNGC 4 cut(s) 515, 655, 861, 1988
HpyF3I CTNAG 5 cut(s) 380, 453, 1231, 1491, 1929
Hsp92I GRCGYC 1 cut(s) 347
HspAI GCGC 1 cut(s) 347
KasI GGCGCC 1 cut(s) 346
KroI GCCGGC 1 cut(s) 600
KroNI GCCGGC 1 cut(s) 602
Ksp22I TGATCA 1 cut(s) 1623
Kzo9I GATC 5 cut(s) 310, 388, 1623, 2071, 2077
LmnI GCTCC 1 cut(s) 1933
Lsp1109I GCAGC 1 cut(s) 1937
MaeI CTAG 4 cut(s) 650, 1187, 1952, 2225
MaeIII GTNAC 5 cut(s) 226, 928, 1348, 1557, 1768
MalI GATC 5 cut(s) 312, 390, 1625, 2073, 2079
MbiI CCGCTC 1 cut(s) 1991
MboI GATC 5 cut(s) 310, 388, 1623, 2071, 2077
MflI RGATCY 2 cut(s) 388, 2071
MhlI GDGCHC 2 cut(s) 1592, 1783
Mly113I GGCGCC 1 cut(s) 347
MlyI GAGTC 3 cut(s) 105, 289, 464
MmeI TCCRAC 2 cut(s) 946, 1872
Mph1103I ATGCAT 3 cut(s) 169, 2046, 2089
MroNI GCCGGC 1 cut(s) 600
MroXI GAANNNNTTC 2 cut(s) 249, 2144
MslI CAYNNNNRTG 1 cut(s) 1479
MspI CCGG 6 cut(s) 435, 544, 554, 601, 605, 1102
MspR9I CCNGG 8 cut(s) 364, 436, 545, 555, 589, 606, 1103, 1451
Mva1269I GAATGC 3 cut(s) 401, 1510, 2144
MvaI CCWGG 3 cut(s) 364, 589, 1451
MwoI GCNNNNNNNGC 4 cut(s) 515, 655, 861, 1988
NaeI GCCGGC 1 cut(s) 602
NarI GGCGCC 1 cut(s) 347
NciI CCSGG 5 cut(s) 436, 545, 555, 606, 1103
NdeII GATC 5 cut(s) 310, 388, 1623, 2071, 2077
NgoMIV GCCGGC 1 cut(s) 600
NlaIV GGNNCC 3 cut(s) 348, 1570, 1583
NmuCI GTSAC 2 cut(s) 226, 928
NsiI ATGCAT 3 cut(s) 169, 2046, 2089
NspI RCATGY 3 cut(s) 855, 2044, 2087
PaeI GCATGC 2 cut(s) 2044, 2087
PctI GAATGC 3 cut(s) 401, 1510, 2144
PdiI GCCGGC 1 cut(s) 602
PdmI GAANNNNTTC 2 cut(s) 249, 2144
PfeI GAWTC 4 cut(s) 272, 318, 980, 1966
PflMI CCANNNNNTGG 1 cut(s) 1578
PfoI TCCNGGA 1 cut(s) 1101
PkrI GCNGC 1 cut(s) 1927
PleI GAGTC 3 cut(s) 104, 288, 463
PluTI GGCGCC 1 cut(s) 350
PpsI GAGTC 3 cut(s) 104, 288, 463
PpuMI RGGWCCY 1 cut(s) 1582
PshBI ATTAAT 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1582
Psp6I CCWGG 3 cut(s) 362, 587, 1449
PspFI CCCAGC 1 cut(s) 803
PspGI CCWGG 3 cut(s) 362, 587, 1449
PspN4I GGNNCC 3 cut(s) 348, 1570, 1583
PspPI GGNCC 2 cut(s) 1582, 1813
PspPPI RGGWCCY 1 cut(s) 1582
PsuI RGATCY 2 cut(s) 388, 2071
RsaI GTAC 4 cut(s) 433, 500, 1462, 2006
RsaNI GTAC 4 cut(s) 432, 499, 1461, 2005
RseI CAYNNNNRTG 1 cut(s) 1479
SatI GCNGC 1 cut(s) 1926
Sau3AI GATC 5 cut(s) 310, 388, 1623, 2071, 2077
Sau96I GGNCC 2 cut(s) 1582, 1813
SchI GAGTC 3 cut(s) 105, 289, 464
ScrFI CCNGG 8 cut(s) 364, 436, 545, 555, 589, 606, 1103, 1451
SduI GDGCHC 2 cut(s) 1592, 1783
SfcI CTRYAG 1 cut(s) 1144
SfoI GGCGCC 1 cut(s) 348
SinI GGWCC 2 cut(s) 1582, 1813
SmiMI CAYNNNNRTG 1 cut(s) 1479
SmlI CTYRAG 3 cut(s) 682, 1083, 2024
SmoI CTYRAG 3 cut(s) 682, 1083, 2024
SphI GCATGC 2 cut(s) 2044, 2087
SsiI CCGC 2 cut(s) 778, 1989
SspDI GGCGCC 1 cut(s) 346
SspMI CTAG 4 cut(s) 650, 1187, 1952, 2225
StyD4I CCNGG 8 cut(s) 362, 434, 543, 553, 587, 604, 1101, 1449
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 906, 1678
TaqI TCGA 5 cut(s) 109, 561, 773, 1755, 2247
TatI WGTACW 2 cut(s) 498, 1460
TfiI GAWTC 4 cut(s) 272, 318, 980, 1966
TscAI CASTG 3 cut(s) 990, 1305, 1633
TseFI GTSAC 2 cut(s) 226, 928
TseI GCWGC 1 cut(s) 1925
Tsp45I GTSAC 2 cut(s) 226, 928
TspRI CASTG 3 cut(s) 990, 1305, 1633
Van91I CCANNNNNTGG 1 cut(s) 1578
VneI GTGCAC 1 cut(s) 1779
VpaK11BI GGWCC 2 cut(s) 1582, 1813
VspI ATTAAT 1 cut(s) 1053
XapI RAATTY 4 cut(s) 1067, 1241, 1285, 1514
XceI RCATGY 3 cut(s) 855, 2044, 2087
XmnI GAANNNNTTC 2 cut(s) 249, 2144
XspI CTAG 4 cut(s) 650, 1187, 1952, 2225
Zsp2I ATGCAT 3 cut(s) 169, 2046, 2089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.