MD13G1010200.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011145
Physical Location & Seq
Forward (+)
633825 .. 637223
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1010200.v1.1.491

Sequence Viewer

Length: 2391 bp
ATGGAGCTCACTGAAGCCGCCGCTCTCGTTTTCTTCTCCTCTTTATTTTTCTTCATCTCCTTCTTCTCAGAGATGCTGCTGTTTCTTCGCAATCTCTTCCGAACGGGTTGCAGAGCCTCCTCCTCCGCATCGTCTCGAGTAAGCCTTCTCTCTTCGATTCCTCAGTACCCATCTAATTGCCGTTTTATCAATTTATCTTCTTTAACTTCATCATCATCGCATGCTACTTCTCTTATAGCTTGCCCATTTGTTTGGTTCACCGGTTTCTTATGCATTTTTCGCTTCCCGTTTGTCACCAAATCCCAACCCAGTTCGTTCCCCGAAAGTTTAAATACCGATTCTTTGAGTAGAATTGTTCAACACGATTACTGGGATGATCCCAGAATTGTAAACTTGTTTGATTCGGCATTGGCGCCGATTTGGGTGTCCAGGTTTTTGGTGGAACTGAAGGGTGATCCCAAGTTGGCGTTGAAATTGTTCAAGTGGGCAAAAACCCAAATTGGGTTTCGCCACACTACTGAGTCTTATTGTATTTTGGTTCACATACTGTTTTTTGCTAGAATGTATGTCGATGCCCATGAAGTTCTTAGAGAGTTGGTCTTGTTGAGCCGGGCATTGCCAGGTTGTGATGTGTTTGATGTGTTGTGGTGGACGAGGAATGTTTGTCGTGTGGGATTTGGAGTGTTTGATGCATTGTTTGGTGTTTTGGTTGAGGTTGGAATGCTTGAGGAAGCAAGTGAATGCTTCTTGAGGATGAAGAAGTTTAGAGTTTTGCCAAAAGTGCGGTCTTGTAATGCGCTTTTGCATAGGTTATCAAAGCCGGGGAAGGGCAATTTGTCAAGGAAGTTTTTTAAGGATATGCTTGGGGCTGGGATTAATCCATCAGTTTTCACATACAATATAATGATTGGTTATATGTGCAAAGAAGGCGATTTGGATACTGCTAGTTGCTTATTTGCACAAATGAAACGGATGGGCCTTACACCTGATGTTGTGACATATAATTCTCTCATTGATGGATATGGGAAGGTTGGACTATTAGATGATTCGGTTTGCATATTTGAAGAAATGAAGGATGCAGATTGTGAACCTGACACAATAACCTTCAATTCTTTGATTAATTGTTGTTGTAAATTTGATAGAATGCCCCAAGCTTTGAATTTTCTCTGTGAGATGAATAATAATGGGTTGAAGCCAAATGTGATAACTTATAGCACTTTAATTGATGCCTTCTGCAAGGAAGGGATGATGCAAGAGGCAGTCAAGATTTTTATGGACATGAAACGAGTTGGTCTTTTACCTAATGAGTTCACCTATACTTCATTGATTGATGCGAATTGTAAATCTGGGAATTTGAGTGAAGCACTGAAGCTGAAAAGTGAGATGTTACAGGCAGGGATTAGCTGGAACATTGTAACCTATACAGCTCTACTTGACGGGCTATGTGAAGACGGGAGGATGGACGAAGCAGAAGAAGTCTTTAGGGAAGTGCAGAAATCTGGAATAATTCCTAACCAGCAAATATGTACTGCCCTTCTTCATGGATATATTAAAGCTAAGAAGATAGAAAATGCTATGGAAATTTGGAATGAAATTAAGGGGAAAGGCTTTAAACCAGATTTGTTACTCTACGGAACCATCATTTGGGGTCTTTGCTCCCAAAATAAGCTTGAAGAGTCTGAGCTTGTGCTCAAGGAAATGACGGGTTATGGATTAACTGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTACAAAGCCGGAAAAACTGAGGCGGCGCTTAATCTTGTACAAGAAATGCGAGACAATGGTATTGAGCTCACTGTTGTAACATATTGTGCATTAATTGATGGTTTGTGCAAAAAGGGATTGTTCCAAGAGGCAACCAGTCATTTTAGGACAATGCCCGACCTTGGTTTGCAACCCAATGTAGCAGTTTTTACAGCCTTAATTGATGGTCTTTGTAAAAATAATTGCATTGAAGCAGCTAAGGAGCTCTTTAAGGAAATGGTAGATAAGGGTTTGATTCCGGATAAAGCTGCTTACACCACTCTAATGGATGGAAACTTAAAGCATGGAAATCTTGAAGAAGCCTTGAGCATTCAAAATAGGATGAGAGAAATCGGTATGGAACTTGATCTGTATGCATATACTTCCTTGATTTGGGGGCTTTCTGAGTTTGGCCAGGTGAAACAAGCAAAAATGTTGCTTGATGAGATGATTGGGAAAGGTATCCTTCCTGACGAGATTCTCTGCATTAGTCTGCTAAGAAAGTACTATAAGCTAGGGAATCTGGATGAAGCCATCGAGTTGCAGATTGAAATGGTAAACAGGGGTCTAATATCTGGAACTTGTGATCACGTGATTCCTAATGCAGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

797

Amino Acids

89.51

Weight (kDa)

5.61

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 259 - 303 1.7e-08 PPR repeat family
PPR_3 PF13812 284 - 343 1.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 291 - 323 7.4e-09 PPR repeat
PPR_2 PF13041 294 - 341 5.4e-18 PPR repeat family
PPR_3 PF13812 318 - 376 5.4e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 325 - 358 1e-10 PPR repeat
PPR_2 PF13041 329 - 378 1.2e-17 PPR repeat family
PPR PF01535 332 - 362 5.9e-08 PPR repeat
PPR_1 PF12854 361 - 392 1.5e-07 PPR repeat
PPR_2 PF13041 364 - 413 3e-17 PPR repeat family
PPR_3 PF13812 390 - 445 3.3e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 395 - 428 3.2e-13 PPR repeat
PPR_2 PF13041 399 - 448 8.2e-19 PPR repeat family
PPR PF01535 402 - 431 3.8e-09 PPR repeat
PPR_long PF17177 417 - 514 4.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 431 - 462 1.5e-09 PPR repeat
TPR_24 PF23276 436 - 531 1.4e-07 Fungal tetratrico peptide repeats
PPR PF01535 437 - 467 4.4e-07 PPR repeat
PPR_2 PF13041 439 - 482 4.2e-12 PPR repeat family
PPR_3 PF13812 457 - 505 3.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 466 - 496 2.1e-10 PPR repeat
PPR_2 PF13041 470 - 506 2.9e-09 PPR repeat family
PPR PF01535 472 - 502 3.7e-08 PPR repeat
PPR_2 PF13041 504 - 540 1.5e-06 PPR repeat family
PPR_3 PF13812 563 - 619 1.2e-08 Pentatricopeptide repeat domain
TPR_24 PF23276 564 - 672 7.3e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 575 - 623 1.1e-14 PPR repeat family
PPR PF01535 578 - 607 1.5e-06 PPR repeat
PPR_long PF17177 592 - 741 2.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 605 - 637 5.8e-08 PPR repeat
PPR_2 PF13041 611 - 658 3.2e-12 PPR repeat family
PPR_1 PF12854 641 - 673 4.7e-09 PPR repeat
PPR_2 PF13041 644 - 690 1.4e-13 PPR repeat family
PPR PF01535 648 - 677 8e-08 PPR repeat
PPR_2 PF13041 679 - 726 4.6e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccB7I CCANNNNNTGG 1 cut(s) 1644
AccBSI CCGCTC 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 2035
AciI CCGC 5 cut(s) 18, 21, 126, 784, 1781
AclWI GGATC 2 cut(s) 371, 449
AcoI YGGCCR 1 cut(s) 2188
AcsI RAATTY 4 cut(s) 1133, 1159, 1351, 1581
AcuI CTGAAG 3 cut(s) 33, 467, 1388
AcvI CACGTG 1 cut(s) 2368
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 4 cut(s) 167, 1528, 1797, 2282
AfiI CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
AgeI ACCGGT 1 cut(s) 260
AjnI CCWGG 3 cut(s) 428, 619, 2190
AjuI GAANNNNNNNTTGG 4 cut(s) 489, 521, 1627, 1659
Alw21I GWGCWC 4 cut(s) 9, 1692, 1827, 2004
Alw26I GTCTC 2 cut(s) 138, 1803
AlwI GGATC 2 cut(s) 371, 449
Ama87I CYCGRG 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 2035
AoxI GGCC 2 cut(s) 976, 2188
ApeKI GCWGC 3 cut(s) 76, 1991, 2045
ApoI RAATTY 4 cut(s) 1133, 1159, 1351, 1581
ArsI GACNNNNNNTTYG 2 cut(s) 770, 802
AseI ATTAAT 3 cut(s) 876, 1119, 1850
AsiGI ACCGGT 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 3 cut(s) 415, 799, 1786
AspS9I GGNCC 1 cut(s) 976
AsuC2I CCSGG 2 cut(s) 611, 822
AsuHPI GGTGA 5 cut(s) 250, 286, 464, 1303, 2206
AvaI CYCGRG 1 cut(s) 135
BalI TGGCCA 1 cut(s) 2190
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 3 cut(s) 9, 1827, 2004
BbrPI CACGTG 1 cut(s) 2368
BbsI GAAGAC 1 cut(s) 1455
Bbv12I GWGCWC 4 cut(s) 9, 1692, 1827, 2004
BbvI GCAGC 3 cut(s) 63, 2003, 2032
BceAI ACGGC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 3 cut(s) 430, 621, 2192
BciVI GTATCC 2 cut(s) 931, 2249
BclI TGATCA 1 cut(s) 2362
BcnI CCSGG 2 cut(s) 611, 822
BcoDI GTCTC 2 cut(s) 138, 1803
BfaI CTAG 3 cut(s) 558, 945, 2291
BfoI RGCGCY 2 cut(s) 416, 1787
BfuI GTATCC 2 cut(s) 931, 2249
BisI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
BlsI GCNGC 6 cut(s) 19, 22, 78, 1783, 1993, 2047
BmcAI AGTACT 1 cut(s) 2282
Bme1390I CCNGG 5 cut(s) 430, 611, 621, 822, 2192
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 976
BmiI GGNNCC 2 cut(s) 414, 1636
BmrFI CCNGG 5 cut(s) 430, 611, 621, 822, 2192
BmrI ACTGGG 2 cut(s) 303, 379
BmsI GCATC 9 cut(s) 63, 137, 562, 679, 1066, 1216, 1239, 1321, 1741
BmuI ACTGGG 2 cut(s) 303, 379
BpiI GAAGAC 1 cut(s) 1455
Bpu10I CCTNAGC 1 cut(s) 1995
BpuEI CTTGAG 4 cut(s) 746, 769, 1676, 2122
BpuMI CCSGG 2 cut(s) 611, 822
BsaAI YACGTR 1 cut(s) 2368
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 821, 1918
BsaWI WCCGGW 2 cut(s) 260, 2035
Bsc4I CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 3 cut(s) 309, 374, 1893
Bse3DI GCAATG 1 cut(s) 614
BseAI TCCGGA 1 cut(s) 2035
BseBI CCWGG 3 cut(s) 430, 621, 2192
BseDI CCNNGG 2 cut(s) 821, 1918
BseLI CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
BseMI GCAATG 1 cut(s) 614
BseMII CTCAG 6 cut(s) 81, 176, 510, 1671, 1767, 2172
BseNI ACTGG 3 cut(s) 309, 374, 1893
BseRI GAGGAG 3 cut(s) 28, 109, 112
BseXI GCAGC 3 cut(s) 63, 2003, 2032
BseYI CCCAGC 1 cut(s) 869
BsgI GTGCAG 1 cut(s) 1511
BshFI GGCC 2 cut(s) 978, 2190
BshNI GGYRCC 1 cut(s) 412
BshTI ACCGGT 1 cut(s) 260
BsiHKAI GWGCWC 4 cut(s) 9, 1692, 1827, 2004
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 5 cut(s) 261, 610, 821, 1767, 2036
BslI CCNNNNNNNGG 6 cut(s) 501, 827, 1644, 1919, 2169, 2381
BsmAI GTCTC 2 cut(s) 138, 1803
BsmBI CGTCTC 1 cut(s) 138
BsmI GAATGC 4 cut(s) 726, 746, 1149, 2106
BsnI GGCC 2 cut(s) 978, 2190
BsoBI CYCGRG 1 cut(s) 135
Bsp1286I GDGCHC 4 cut(s) 9, 1692, 1827, 2004
Bsp13I TCCGGA 1 cut(s) 2035
Bsp1407I TGTACA 1 cut(s) 1795
Bsp143I GATC 4 cut(s) 376, 454, 2143, 2362
BspACI CCGC 5 cut(s) 18, 21, 126, 784, 1781
BspANI GGCC 2 cut(s) 978, 2190
BspCNI CTCAG 6 cut(s) 80, 175, 511, 1672, 1768, 2173
BspEI TCCGGA 1 cut(s) 2035
BspLI GGNNCC 2 cut(s) 414, 1636
BspPI GGATC 2 cut(s) 371, 449
BspT107I GGYRCC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 614
BsrFI RCCGGY 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 1795
BsrI ACTGG 3 cut(s) 309, 374, 1893
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 821, 1918
BssMI GATC 4 cut(s) 376, 454, 2143, 2362
BssNI GRCGYC 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 1918
Bst2UI CCWGG 3 cut(s) 430, 621, 2192
Bst4CI ACNGT 2 cut(s) 549, 1831
Bst6I CTCTTC 3 cut(s) 101, 157, 1668
BstACI GRCGYC 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 1795
BstBAI YACGTR 1 cut(s) 2368
BstC8I GCNNGC 2 cut(s) 222, 241
BstENI CCTNNNNNAGG 1 cut(s) 2379
BstH2I RGCGCY 2 cut(s) 416, 1787
BstHHI GCGC 3 cut(s) 415, 799, 1786
BstKTI GATC 4 cut(s) 379, 457, 2146, 2365
BstMAI GTCTC 2 cut(s) 138, 1803
BstMBI GATC 4 cut(s) 376, 454, 2143, 2362
BstMWI GCNNNNNNNGC 3 cut(s) 279, 781, 927
BstNI CCWGG 3 cut(s) 430, 621, 2192
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 5 cut(s) 428, 609, 619, 820, 2190
BstV1I GCAGC 3 cut(s) 63, 2003, 2032
BstV2I GAAGAC 1 cut(s) 1455
BstXI CCANNNNNNTGG 3 cut(s) 252, 436, 2062
BsuI GTATCC 2 cut(s) 931, 2249
BsuRI GGCC 2 cut(s) 978, 2190
BtgZI GCGATG 1 cut(s) 201
BtsIMutI CAGTG 3 cut(s) 9, 1364, 1827
Cac8I GCNNGC 2 cut(s) 222, 241
CfoI GCGC 3 cut(s) 415, 799, 1786
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 976
Csp6I GTAC 4 cut(s) 166, 1527, 1796, 2281
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 5 cut(s) 221, 578, 1279, 1541, 2081
CviQI GTAC 4 cut(s) 166, 1527, 1796, 2281
DinI GGCGCC 1 cut(s) 414
DpnI GATC 4 cut(s) 378, 456, 2145, 2364
DpnII GATC 4 cut(s) 376, 454, 2143, 2362
DraI TTTAAA 2 cut(s) 330, 1612
EaeI YGGCCR 1 cut(s) 2188
Eam1104I CTCTTC 3 cut(s) 101, 157, 1668
EarI CTCTTC 3 cut(s) 101, 157, 1668
Ecl136II GAGCTC 3 cut(s) 7, 1825, 2002
Eco130I CCWWGG 1 cut(s) 1918
Eco24I GRGCYC 3 cut(s) 9, 1827, 2004
Eco53kI GAGCTC 3 cut(s) 7, 1825, 2002
Eco57I CTGAAG 3 cut(s) 33, 467, 1388
Eco72I CACGTG 1 cut(s) 2368
Eco88I CYCGRG 1 cut(s) 135
EcoICRI GAGCTC 3 cut(s) 7, 1825, 2002
EcoNI CCTNNNNNAGG 1 cut(s) 2379
EcoRII CCWGG 3 cut(s) 428, 619, 2190
EcoT14I CCWWGG 1 cut(s) 1918
EcoT22I ATGCAT 3 cut(s) 275, 694, 2155
EcoT38I GRGCYC 3 cut(s) 9, 1827, 2004
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 1918
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 5 cut(s) 224, 581, 1282, 1544, 2084
FalI AAGNNNNNCTT 4 cut(s) 1988, 2020, 2226, 2258
FatI CATG 5 cut(s) 220, 577, 1278, 1540, 2080
FbaI TGATCA 1 cut(s) 2362
Fnu4HI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
FriOI GRGCYC 3 cut(s) 9, 1827, 2004
Fsp4HI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
FspBI CTAG 3 cut(s) 558, 945, 2291
GlaI GCGC 3 cut(s) 414, 798, 1785
GluI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
GsaI CCCAGC 1 cut(s) 873
HaeII RGCGCY 2 cut(s) 416, 1787
HaeIII GGCC 2 cut(s) 978, 2190
HapII CCGG 5 cut(s) 261, 610, 821, 1767, 2036
HhaI GCGC 3 cut(s) 415, 799, 1786
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 5 cut(s) 224, 581, 1282, 1544, 2084
Hin6I GCGC 3 cut(s) 413, 797, 1784
HinP1I GCGC 3 cut(s) 413, 797, 1784
HindIII AAGCTT 2 cut(s) 1152, 1667
HpaII CCGG 5 cut(s) 261, 610, 821, 1767, 2036
HphI GGTGA 5 cut(s) 250, 286, 464, 1303, 2206
Hpy166II GTNNAC 7 cut(s) 258, 391, 541, 651, 1088, 1311, 2335
Hpy188I TCNGA 4 cut(s) 70, 101, 1681, 2182
Hpy188III TCNNGA 9 cut(s) 135, 748, 1264, 1500, 2036, 2090, 2246, 2300, 2352
Hpy8I GTNNAC 7 cut(s) 258, 391, 541, 651, 1088, 1311, 2335
HpyCH4III ACNGT 2 cut(s) 549, 1831
HpyCH4IV ACGT 1 cut(s) 2367
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 781, 927
HpySE526I ACGT 1 cut(s) 2367
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 5 cut(s) 224, 581, 1282, 1544, 2084
HspAI GCGC 3 cut(s) 413, 797, 1784
KasI GGCGCC 1 cut(s) 412
Kpn2I TCCGGA 1 cut(s) 2035
Ksp22I TGATCA 1 cut(s) 2362
Kzo9I GATC 4 cut(s) 376, 454, 2143, 2362
LmnI GCTCC 3 cut(s) 4, 1661, 1999
Lsp1109I GCAGC 3 cut(s) 63, 2003, 2032
LweI GCATC 9 cut(s) 63, 137, 562, 679, 1066, 1216, 1239, 1321, 1741
MaeI CTAG 3 cut(s) 558, 945, 2291
MaeII ACGT 1 cut(s) 2367
MaeIII GTNAC 6 cut(s) 292, 994, 1386, 1414, 1623, 1834
MalI GATC 4 cut(s) 378, 456, 2145, 2364
MbiI CCGCTC 1 cut(s) 23
MboI GATC 4 cut(s) 376, 454, 2143, 2362
MhlI GDGCHC 4 cut(s) 9, 1692, 1827, 2004
MlsI TGGCCA 1 cut(s) 2190
MluNI TGGCCA 1 cut(s) 2190
Mly113I GGCGCC 1 cut(s) 413
MlyI GAGTC 2 cut(s) 530, 1685
MmeI TCCRAC 2 cut(s) 697, 1012
Mox20I TGGCCA 1 cut(s) 2190
Mph1103I ATGCAT 3 cut(s) 275, 694, 2155
MroI TCCGGA 1 cut(s) 2035
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 2190
MslI CAYNNNNRTG 1 cut(s) 2060
Msp20I TGGCCA 1 cut(s) 2190
MspI CCGG 5 cut(s) 261, 610, 821, 1767, 2036
MspR9I CCNGG 5 cut(s) 430, 611, 621, 822, 2192
Mva1269I GAATGC 4 cut(s) 726, 746, 1149, 2106
MvaI CCWGG 3 cut(s) 430, 621, 2192
MwoI GCNNNNNNNGC 3 cut(s) 279, 781, 927
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 2 cut(s) 611, 822
NdeII GATC 4 cut(s) 376, 454, 2143, 2362
NlaIII CATG 5 cut(s) 224, 581, 1282, 1544, 2084
NlaIV GGNNCC 2 cut(s) 414, 1636
NmuCI GTSAC 2 cut(s) 292, 994
NsiI ATGCAT 3 cut(s) 275, 694, 2155
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PaeR7I CTCGAG 1 cut(s) 135
PctI GAATGC 4 cut(s) 726, 746, 1149, 2106
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 8 cut(s) 157, 338, 401, 1046, 2032, 2254, 2296, 2371
PflMI CCANNNNNTGG 1 cut(s) 1644
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 6 cut(s) 19, 22, 78, 1783, 1993, 2047
PleI GAGTC 2 cut(s) 529, 1684
PluTI GGCGCC 1 cut(s) 416
PmaCI CACGTG 1 cut(s) 2368
PmlI CACGTG 1 cut(s) 2368
PpsI GAGTC 2 cut(s) 529, 1684
Ppu21I YACGTR 1 cut(s) 2368
PshBI ATTAAT 3 cut(s) 876, 1119, 1850
Psp124BI GAGCTC 3 cut(s) 9, 1827, 2004
Psp6I CCWGG 3 cut(s) 428, 619, 2190
PspCI CACGTG 1 cut(s) 2368
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 3 cut(s) 428, 619, 2190
PspN4I GGNNCC 2 cut(s) 414, 1636
PspPI GGNCC 1 cut(s) 976
RsaI GTAC 4 cut(s) 167, 1528, 1797, 2282
RsaNI GTAC 4 cut(s) 166, 1527, 1796, 2281
RseI CAYNNNNRTG 1 cut(s) 2060
SacI GAGCTC 3 cut(s) 9, 1827, 2004
SatI GCNGC 6 cut(s) 18, 21, 77, 1782, 1992, 2046
Sau3AI GATC 4 cut(s) 376, 454, 2143, 2362
Sau96I GGNCC 1 cut(s) 976
ScaI AGTACT 1 cut(s) 2282
SchI GAGTC 2 cut(s) 530, 1685
ScrFI CCNGG 5 cut(s) 430, 611, 621, 822, 2192
SduI GDGCHC 4 cut(s) 9, 1692, 1827, 2004
SfaNI GCATC 9 cut(s) 63, 137, 562, 679, 1066, 1216, 1239, 1321, 1741
SfoI GGCGCC 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 2060
SmlI CTYRAG 5 cut(s) 135, 725, 748, 1691, 2101
SmoI CTYRAG 5 cut(s) 135, 725, 748, 1691, 2101
SphI GCATGC 1 cut(s) 224
SsiI CCGC 5 cut(s) 18, 21, 126, 784, 1781
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 3 cut(s) 558, 945, 2291
SstI GAGCTC 3 cut(s) 9, 1827, 2004
StyD4I CCNGG 5 cut(s) 428, 609, 619, 820, 2190
StyI CCWWGG 1 cut(s) 1918
TaaI ACNGT 2 cut(s) 549, 1831
TaiI ACGT 1 cut(s) 2370
TaqI TCGA 4 cut(s) 136, 155, 570, 2313
TatI WGTACW 3 cut(s) 1526, 1795, 2280
TauI GCSGC 3 cut(s) 20, 23, 1784
TfiI GAWTC 8 cut(s) 157, 338, 401, 1046, 2032, 2254, 2296, 2371
TscAI CASTG 3 cut(s) 16, 1371, 1834
TseFI GTSAC 2 cut(s) 292, 994
TseI GCWGC 3 cut(s) 76, 1991, 2045
Tsp45I GTSAC 2 cut(s) 292, 994
TspGWI ACGGA 2 cut(s) 985, 1647
TspRI CASTG 3 cut(s) 16, 1371, 1834
Van91I CCANNNNNTGG 1 cut(s) 1644
VspI ATTAAT 3 cut(s) 876, 1119, 1850
XagI CCTNNNNNAGG 1 cut(s) 2379
XapI RAATTY 4 cut(s) 1133, 1159, 1351, 1581
XceI RCATGY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XhoI CTCGAG 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 3 cut(s) 558, 945, 2291
ZrmI AGTACT 1 cut(s) 2282
Zsp2I ATGCAT 3 cut(s) 275, 694, 2155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.