Rroxscaffold_5G00386480

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011145
Physical Location & Seq
Reverse (-)
65383985 .. 65387697
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386480.1

Sequence Viewer

Length: 2346 bp
ATGAAGCCAACTGAAGAAGAAGGACAAGGCTTCTTTCTGTTCATCATCATCATCATCTTCTCAAAGATGCTGTTGTTTCTTCGCACTCTGTTCCACAGAAGTTGCAGAGTCTCCTCTCTTCGAGTAAGACCTAAATACCCATCATCTAATTCCTGCTTTATCAATGCATCATCATCGCATGGGTCTCTCATAGCTTCCCCTTTGGTTTGGTTCACCAGTTTCTTCTGTATTATTCGCTTCCCATTTGTCACTAAATCCAATCCTGATATGGTTCAAGAAAACTTAAATGTAGAATCTTTGAGTCGAATTGTTCAGCAGGACTATTGGGACGACCCCAGAATTGTTACTGTGTTTGGTTCGGCATTGGCGCCGATTTGGGTGTCAAGGTTTTTGGTGGAACTGAGAAAAGATCCCAACTTGGCATTCAAGTTGTTCAAATGGGCAAAAACCCGGACCGGGTTTTGCCACACTACTGAGTCTTATTGTATTTTGGTTCACATACTTTTTGTTGGTAGAATGTATATTGATGCCCATGAGGTTATTAGAGAGTTGGTGTTGTTGAGCCGGGGATTGCCGGGTTTTGATGTGTTTGATGGGCTGTGGGAGACCAGGAATGTTTGTCGTCCGGGGTTTGGAGTGTTTGATGCCTTGTTTAGTGTTTTGGTTGAGCTAGGAATGCTTGAGAAAGCAAGTGAGTGCTTCTTGAGGATGAGGAAGTGTAGAGTTTTGCCGAAAGTGCGATCTTGTAATGCCCTTTTGCACCGGCTTTCCAAGTCAGGGAAGGGGAATTTGTCAAGGCAGTTTTTTAAGGATATGCTTGGGGCTGGGATTTCCCCTTCTGTTTTCACATTCAATATAATGATTGGATATACATGCAAAGAAGGCGATTTGGAAACCGCAAGAAGCTTGTTTGCACAAATGAAACAGTTGGGTCTTACACCTGATATTGTGACATATAATTCTCTTATTGACGGATATGGAAAGGTTGGATTATTAGATGATTCAGTTTGCATATTTGAAGAAATGAAGGATGTAGGTTGTGAACCTGATCTAATAACATACAATGCTTTGATTAATTGTTTTTGTAAATTTGAAAAAATGCCTCAAGCTTTCAATTTTCTCCGCGAGATGATGAGTAATGGCTTGAAACCAAATGTCATAACATATAGCACGTTGATTGATGCCTTCTGTAAGGAAGGGATGATGCAAGAGGCAATTAAGATTTTTATAGACATGAAACGAGTTGGTCTTTCAGCTAATGAGTTCACCTATACTTCTTTGATTGATGCAAGTTGTAAAGCTGGAAATTTGAGCCAAGCACTGAAGTTCAGAAATGAGATGTTAGAGGCAGGAGTTAGCTTCAATATTGTAACTTATACGGCTCTACTGGATGGGCTGTGTGAAGATGGGAAGATGGAGGAAGCAGAAGAAGTTTTTAGGGAGGTGCTAAACTCTGGAATAATTCCTAACCAGGAAATATGTACTGCCCTTGTTCATGGGTATGTTAAGACTAAGAAGATGGAGAATGCTACAGAATTCTTGAAGGATATCAAGGGGAAAGGCTTTAAACCAGATTTGTTACTTTATGGAACCATCATTTGGGTCCTTTGCTCTCAAAATAAGGTTGAAGAGGCTGAGCTTGTAATCAGTGAAATCAAGGATTGTGGTTTAACTGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTTCAAGAAAGGAAACACCAATGAGGCACTCAATGTTTTACAGCGAATGCTGGACAACAATATTGAGGTTAGTGTGGTAACATATTGTGCACTAATTGATGGTTTGTGCAAAAAGGGGTTGCTCCAAGAGGCCATTACTTATTTTAGGACGACGTCCAACATTGGCTTGCAACCCAATGTTGCAGTTTTTACGGCCTTAATTGATGGTCTTTGTAAAGGTAGTTGCATTGAAGCAGCTAAGGAGCTGTTTAATGAAATGCTAGACAAGGGTATGATTCCAGATAAAGCTACTTACACCACTCTAATAGATGGAAACTTAAAGCATGGAAATCTTGAGGAAGCTTTGAGCATGCACAGGAGAATGAAAGAAATTGGTATGGAGCTTGACCTGCATGCATATACTTCCTTGATTTGGGGGCTTTCTCACCTTGGTCAGATGCAACAAGCAAAAGCATTCCTTGATGAGATGATTGGGAAGGGTATAATTCCTGATGAGATTCTCATTGTTTGTCTTGTAAGAAAATACTATGAGCTAGGGAATGTGGATGAAGCCATCAAGTTGCAGACTGAATGGCAAAACAGGGGTCTAAGAACTGGAACTTCTAATTTTGTGTTTCCTAATGCAAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

781

Amino Acids

88.18

Weight (kDa)

6.37

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 244 - 288 9.9e-09 PPR repeat family
PPR_long PF17177 266 - 359 2e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 276 - 308 1.7e-07 PPR repeat
PPR_2 PF13041 279 - 328 1.9e-16 PPR repeat family
PPR_3 PF13812 302 - 361 6.2e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 311 - 343 7.8e-10 PPR repeat
PPR_2 PF13041 314 - 363 1.1e-17 PPR repeat family
PPR PF01535 317 - 347 2.5e-08 PPR repeat
PPR_long PF17177 333 - 436 2.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 346 - 377 1.4e-10 PPR repeat
PPR_2 PF13041 350 - 398 4.5e-17 PPR repeat family
PPR PF01535 352 - 382 2.4e-06 PPR repeat
PPR_3 PF13812 374 - 430 1.7e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 380 - 413 1.8e-13 PPR repeat
PPR_2 PF13041 386 - 433 2.4e-16 PPR repeat family
PPR PF01535 387 - 416 4.1e-09 PPR repeat
PPR_long PF17177 403 - 497 2.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 416 - 447 3.3e-09 PPR repeat
PPR PF01535 422 - 452 2e-06 PPR repeat
PPR_2 PF13041 426 - 467 5.1e-11 PPR repeat family
PPR_long PF17177 437 - 598 1.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 445 - 490 8.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 451 - 481 9.6e-10 PPR repeat
PPR_2 PF13041 455 - 491 1.9e-08 PPR repeat family
PPR PF01535 457 - 487 1.1e-07 PPR repeat
PPR_3 PF13812 548 - 604 3.6e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 548 - 656 1.1e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 560 - 608 1.2e-13 PPR repeat family
PPR PF01535 563 - 592 5.7e-06 PPR repeat
PPR_long PF17177 574 - 728 3.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 591 - 617 3.8e-07 PPR repeat
PPR_1 PF12854 626 - 657 4.5e-07 PPR repeat
PPR_2 PF13041 629 - 675 5e-14 PPR repeat family
PPR PF01535 633 - 661 3.9e-06 PPR repeat
PPR_1 PF12854 660 - 693 7.3e-06 PPR repeat
PPR PF01535 668 - 696 1.6e-07 PPR repeat
PPR_2 PF13041 668 - 712 3.3e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1868
Acc36I ACCTGC 1 cut(s) 2109
AccB1I GGYRCC 1 cut(s) 367
AccB7I CCANNNNNTGG 1 cut(s) 1599
AccII CGCG 1 cut(s) 1125
AciI CCGC 2 cut(s) 897, 1123
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 4 cut(s) 787, 1088, 1306, 1535
AcuI CTGAAG 2 cut(s) 33, 1343
AcyI GRCGYC 2 cut(s) 368, 1865
AfaI GTAC 1 cut(s) 1483
AfiI CCNNNNNNNGG 5 cut(s) 456, 632, 777, 1599, 2124
AjnI CCWGG 2 cut(s) 608, 1470
AjuI GAANNNNNNNTTGG 4 cut(s) 407, 439, 1582, 1614
Alw21I GWGCWC 1 cut(s) 1804
Alw26I GTCTC 3 cut(s) 115, 189, 599
Alw44I GTGCAC 1 cut(s) 1800
AlwI GGATC 1 cut(s) 404
AoxI GGCC 2 cut(s) 1842, 1905
ApaLI GTGCAC 1 cut(s) 1800
ApeKI GCWGC 1 cut(s) 1946
ApoI RAATTY 4 cut(s) 787, 1088, 1306, 1535
ArsI GACNNNNNNTTYG 2 cut(s) 2281, 2313
AseI ATTAAT 1 cut(s) 1074
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 453, 1603
AsuC2I CCSGG 5 cut(s) 451, 457, 566, 576, 627
AsuHPI GGTGA 3 cut(s) 205, 1258, 2129
AvaII GGWCC 2 cut(s) 453, 1603
BaeGI GKGCMC 1 cut(s) 1804
BanI GGYRCC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 1804
BbvI GCAGC 1 cut(s) 1958
BceAI ACGGC 2 cut(s) 1395, 1920
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 2 cut(s) 610, 1472
BcnI CCSGG 5 cut(s) 451, 457, 566, 576, 627
BcoDI GTCTC 3 cut(s) 115, 189, 599
BfaI CTAG 3 cut(s) 671, 1973, 2246
BfmI CTRYAG 1 cut(s) 1530
BfoI RGCGCY 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 2109
BisI GCNGC 1 cut(s) 1947
BlpI GCTNAGC 1 cut(s) 1635
BlsI GCNGC 1 cut(s) 1948
Bme1390I CCNGG 7 cut(s) 451, 457, 566, 576, 610, 627, 1472
Bme18I GGWCC 2 cut(s) 453, 1603
BmgT120I GGNCC 2 cut(s) 453, 1603
BmiI GGNNCC 3 cut(s) 369, 1591, 1604
BmrFI CCNGG 7 cut(s) 451, 457, 566, 576, 610, 627, 1472
BmsI GCATC 9 cut(s) 57, 176, 517, 634, 1171, 1194, 1276, 1696, 2139
Bpu10I CCTNAGC 1 cut(s) 1950
Bpu1102I GCTNAGC 1 cut(s) 1635
BpuEI CTTGAG 4 cut(s) 701, 724, 1089, 2066
BpuMI CCSGG 5 cut(s) 451, 457, 566, 576, 627
BsaHI GRCGYC 2 cut(s) 368, 1865
BsaI GGTCTC 2 cut(s) 189, 599
BsaJI CCNNGG 3 cut(s) 565, 626, 2140
Bsc4I CCNNNNNNNGG 5 cut(s) 456, 632, 777, 1599, 2124
Bse118I RCCGGY 1 cut(s) 762
Bse1I ACTGG 3 cut(s) 216, 1392, 2311
BseBI CCWGG 2 cut(s) 610, 1472
BseDI CCNNGG 3 cut(s) 565, 626, 2140
BseGI GGATG 6 cut(s) 714, 1036, 1206, 1396, 1711, 2263
BseLI CCNNNNNNNGG 5 cut(s) 456, 632, 777, 1599, 2124
BseMII CTCAG 3 cut(s) 392, 465, 1626
BseNI ACTGG 3 cut(s) 216, 1392, 2311
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 1804
BseXI GCAGC 1 cut(s) 1958
BseYI CCCAGC 1 cut(s) 824
Bsh1236I CGCG 1 cut(s) 1125
BshFI GGCC 2 cut(s) 1844, 1907
BshNI GGYRCC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 1804
BsiSI CCGG 6 cut(s) 451, 456, 565, 575, 626, 763
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 5 cut(s) 456, 632, 777, 1599, 2124
BsmAI GTCTC 3 cut(s) 115, 189, 599
BsmFI GGGAC 1 cut(s) 341
BsmI GAATGC 5 cut(s) 422, 681, 1531, 1764, 2165
BsnI GGCC 2 cut(s) 1844, 1907
Bso31I GGTCTC 2 cut(s) 189, 599
Bsp1286I GDGCHC 1 cut(s) 1804
Bsp143I GATC 3 cut(s) 409, 740, 1048
Bsp1720I GCTNAGC 1 cut(s) 1635
BspACI CCGC 2 cut(s) 897, 1123
BspANI GGCC 2 cut(s) 1844, 1907
BspCNI CTCAG 3 cut(s) 393, 466, 1627
BspFNI CGCG 1 cut(s) 1125
BspLI GGNNCC 3 cut(s) 369, 1591, 1604
BspMI ACCTGC 1 cut(s) 2109
BspPI GGATC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 367
BspTNI GGTCTC 2 cut(s) 189, 599
BsrFI RCCGGY 1 cut(s) 762
BsrI ACTGG 3 cut(s) 216, 1392, 2311
BssAI RCCGGY 1 cut(s) 762
BssECI CCNNGG 3 cut(s) 565, 626, 2140
BssMI GATC 3 cut(s) 409, 740, 1048
BssNI GRCGYC 2 cut(s) 368, 1865
BssT1I CCWWGG 1 cut(s) 2140
Bst2UI CCWGG 2 cut(s) 610, 1472
Bst4CI ACNGT 2 cut(s) 349, 927
Bst6I CTCTTC 2 cut(s) 123, 1623
BstACI GRCGYC 2 cut(s) 368, 1865
BstC8I GCNNGC 3 cut(s) 1880, 2063, 2106
BstDEI CTNAG 6 cut(s) 401, 474, 1512, 1635, 1950, 2300
BstF5I GGATG 6 cut(s) 714, 1036, 1206, 1396, 1711, 2263
BstFNI CGCG 1 cut(s) 1125
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 3 cut(s) 412, 743, 1051
BstMAI GTCTC 3 cut(s) 115, 189, 599
BstMBI GATC 3 cut(s) 409, 740, 1048
BstMWI GCNNNNNNNGC 4 cut(s) 676, 736, 882, 2101
BstNI CCWGG 2 cut(s) 610, 1472
BstNSI RCATGY 3 cut(s) 876, 2065, 2108
BstSCI CCNGG 7 cut(s) 449, 455, 564, 574, 608, 625, 1470
BstSFI CTRYAG 1 cut(s) 1530
BstSLI GKGCMC 1 cut(s) 1804
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 1 cut(s) 1958
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 2 cut(s) 1844, 1907
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 6 cut(s) 714, 1036, 1206, 1396, 1711, 2263
BtsIMutI CAGTG 2 cut(s) 1319, 1654
BveI ACCTGC 1 cut(s) 2109
Cac8I GCNNGC 3 cut(s) 1880, 2063, 2106
CfoI GCGC 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 762
Cfr13I GGNCC 2 cut(s) 453, 1603
CpoI CGGWCCG 1 cut(s) 453
Csp6I GTAC 1 cut(s) 1482
CspCI CAANNNNNGTGG 4 cut(s) 83, 118, 1645, 1680
CspI CGGWCCG 1 cut(s) 453
CviAII CATG 8 cut(s) 179, 533, 873, 1234, 1496, 2036, 2062, 2105
CviQI GTAC 1 cut(s) 1482
DdeI CTNAG 6 cut(s) 401, 474, 1512, 1635, 1950, 2300
DinI GGCGCC 1 cut(s) 369
DpnI GATC 3 cut(s) 411, 742, 1050
DpnII GATC 3 cut(s) 409, 740, 1048
DraI TTTAAA 1 cut(s) 1567
Eam1104I CTCTTC 2 cut(s) 123, 1623
EarI CTCTTC 2 cut(s) 123, 1623
Eco130I CCWWGG 1 cut(s) 2140
Eco31I GGTCTC 2 cut(s) 189, 599
Eco32I GATATC 1 cut(s) 1549
Eco47I GGWCC 2 cut(s) 453, 1603
Eco57I CTGAAG 2 cut(s) 33, 1343
EcoO109I RGGNCCY 1 cut(s) 1603
EcoRI GAATTC 1 cut(s) 1535
EcoRII CCWGG 2 cut(s) 608, 1470
EcoRV GATATC 1 cut(s) 1549
EcoT14I CCWWGG 1 cut(s) 2140
EcoT22I ATGCAT 2 cut(s) 169, 2110
EgeI GGCGCC 1 cut(s) 369
EheI GGCGCC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 2140
FaeI CATG 8 cut(s) 182, 536, 876, 1237, 1499, 2039, 2065, 2108
FalI AAGNNNNNCTT 2 cut(s) 2154, 2186
FaqI GGGAC 1 cut(s) 341
FatI CATG 8 cut(s) 178, 532, 872, 1233, 1495, 2035, 2061, 2104
Fnu4HI GCNGC 1 cut(s) 1947
FokI GGATG 6 cut(s) 721, 1043, 1213, 1403, 1718, 2270
Fsp4HI GCNGC 1 cut(s) 1947
FspBI CTAG 3 cut(s) 671, 1973, 2246
GlaI GCGC 1 cut(s) 369
GluI GCNGC 1 cut(s) 1947
GsaI CCCAGC 1 cut(s) 828
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 2 cut(s) 1844, 1907
HapII CCGG 6 cut(s) 451, 456, 565, 575, 626, 763
HhaI GCGC 1 cut(s) 370
Hin1I GRCGYC 2 cut(s) 368, 1865
Hin1II CATG 8 cut(s) 182, 536, 876, 1237, 1499, 2039, 2065, 2108
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 3 cut(s) 904, 1107, 2052
HinfI GANTC 7 cut(s) 108, 293, 301, 476, 1001, 1987, 2209
HpaII CCGG 6 cut(s) 451, 456, 565, 575, 626, 763
HphI GGTGA 3 cut(s) 205, 1258, 2129
Hpy166II GTNNAC 5 cut(s) 213, 496, 1043, 1266, 1802
Hpy188I TCNGA 2 cut(s) 1331, 2148
Hpy188III TCNNGA 9 cut(s) 263, 275, 703, 1455, 1540, 1717, 1991, 2045, 2201
Hpy8I GTNNAC 5 cut(s) 213, 496, 1043, 1266, 1802
Hpy99I CGWCG 1 cut(s) 1867
HpyAV CCTTC 9 cut(s) 14, 775, 846, 875, 1021, 1190, 1195, 1537, 2182
HpyCH4III ACNGT 2 cut(s) 349, 927
HpyCH4IV ACGT 2 cut(s) 1172, 1865
HpyF10VI GCNNNNNNNGC 4 cut(s) 676, 736, 882, 2101
HpyF3I CTNAG 6 cut(s) 401, 474, 1512, 1635, 1950, 2300
HpySE526I ACGT 2 cut(s) 1172, 1865
Hsp92I GRCGYC 2 cut(s) 368, 1865
Hsp92II CATG 8 cut(s) 182, 536, 876, 1237, 1499, 2039, 2065, 2108
HspAI GCGC 1 cut(s) 368
KasI GGCGCC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 409, 740, 1048
LmnI GCTCC 3 cut(s) 1839, 1954, 2092
Lsp1109I GCAGC 1 cut(s) 1958
LweI GCATC 9 cut(s) 57, 176, 517, 634, 1171, 1194, 1276, 1696, 2139
MaeI CTAG 3 cut(s) 671, 1973, 2246
MaeII ACGT 2 cut(s) 1172, 1865
MaeIII GTNAC 6 cut(s) 247, 343, 949, 1369, 1578, 1789
MalI GATC 3 cut(s) 411, 742, 1050
MboI GATC 3 cut(s) 409, 740, 1048
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 1804
Mly113I GGCGCC 1 cut(s) 368
MlyI GAGTC 3 cut(s) 117, 310, 485
MmeI TCCRAC 2 cut(s) 967, 1893
Mph1103I ATGCAT 2 cut(s) 169, 2110
MslI CAYNNNNRTG 1 cut(s) 1500
MspI CCGG 6 cut(s) 451, 456, 565, 575, 626, 763
MspR9I CCNGG 7 cut(s) 451, 457, 566, 576, 610, 627, 1472
Mva1269I GAATGC 5 cut(s) 422, 681, 1531, 1764, 2165
MvaI CCWGG 2 cut(s) 610, 1472
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 4 cut(s) 676, 736, 882, 2101
NarI GGCGCC 1 cut(s) 368
NciI CCSGG 5 cut(s) 451, 457, 566, 576, 627
NdeII GATC 3 cut(s) 409, 740, 1048
NlaIII CATG 8 cut(s) 182, 536, 876, 1237, 1499, 2039, 2065, 2108
NlaIV GGNNCC 3 cut(s) 369, 1591, 1604
NmuCI GTSAC 2 cut(s) 247, 949
NsiI ATGCAT 2 cut(s) 169, 2110
NspI RCATGY 3 cut(s) 876, 2065, 2108
PaeI GCATGC 2 cut(s) 2065, 2108
PctI GAATGC 5 cut(s) 422, 681, 1531, 1764, 2165
PfeI GAWTC 4 cut(s) 293, 1001, 1987, 2209
PflFI GACNNNGTC 1 cut(s) 1864
PflMI CCANNNNNTGG 1 cut(s) 1599
PkrI GCNGC 1 cut(s) 1948
PleI GAGTC 3 cut(s) 116, 309, 484
PluTI GGCGCC 1 cut(s) 371
PpsI GAGTC 3 cut(s) 116, 309, 484
PpuMI RGGWCCY 1 cut(s) 1603
PshBI ATTAAT 1 cut(s) 1074
Psp5II RGGWCCY 1 cut(s) 1603
Psp6I CCWGG 2 cut(s) 608, 1470
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 2 cut(s) 608, 1470
PspN4I GGNNCC 3 cut(s) 369, 1591, 1604
PspPI GGNCC 2 cut(s) 453, 1603
PspPPI RGGWCCY 1 cut(s) 1603
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 1864
RsaI GTAC 1 cut(s) 1483
RsaNI GTAC 1 cut(s) 1482
RseI CAYNNNNRTG 1 cut(s) 1500
Rsr2I CGGWCCG 1 cut(s) 453
RsrII CGGWCCG 1 cut(s) 453
SatI GCNGC 1 cut(s) 1947
Sau3AI GATC 3 cut(s) 409, 740, 1048
Sau96I GGNCC 2 cut(s) 453, 1603
SchI GAGTC 3 cut(s) 117, 310, 485
ScrFI CCNGG 7 cut(s) 451, 457, 566, 576, 610, 627, 1472
SduI GDGCHC 1 cut(s) 1804
SfaNI GCATC 9 cut(s) 57, 176, 517, 634, 1171, 1194, 1276, 1696, 2139
SfcI CTRYAG 1 cut(s) 1530
SfoI GGCGCC 1 cut(s) 369
SinI GGWCC 2 cut(s) 453, 1603
SmiMI CAYNNNNRTG 1 cut(s) 1500
SmlI CTYRAG 4 cut(s) 680, 703, 1104, 2045
SmoI CTYRAG 4 cut(s) 680, 703, 1104, 2045
SphI GCATGC 2 cut(s) 2065, 2108
SsiI CCGC 2 cut(s) 897, 1123
SspDI GGCGCC 1 cut(s) 367
SspI AATATT 2 cut(s) 1366, 1774
SspMI CTAG 3 cut(s) 671, 1973, 2246
StyD4I CCNGG 7 cut(s) 449, 455, 564, 574, 608, 625, 1470
StyI CCWWGG 1 cut(s) 2140
TaaI ACNGT 2 cut(s) 349, 927
TaiI ACGT 2 cut(s) 1175, 1868
TaqI TCGA 2 cut(s) 121, 304
TatI WGTACW 1 cut(s) 1481
TfiI GAWTC 4 cut(s) 293, 1001, 1987, 2209
TscAI CASTG 2 cut(s) 1326, 1654
TseFI GTSAC 2 cut(s) 247, 949
TseI GCWGC 1 cut(s) 1946
Tsp45I GTSAC 2 cut(s) 247, 949
TspGWI ACGGA 1 cut(s) 987
TspRI CASTG 2 cut(s) 1326, 1654
Tth111I GACNNNGTC 1 cut(s) 1864
Van91I CCANNNNNTGG 1 cut(s) 1599
VneI GTGCAC 1 cut(s) 1800
VpaK11BI GGWCC 2 cut(s) 453, 1603
VspI ATTAAT 1 cut(s) 1074
XapI RAATTY 4 cut(s) 787, 1088, 1306, 1535
XceI RCATGY 3 cut(s) 876, 2065, 2108
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XspI CTAG 3 cut(s) 671, 1973, 2246
ZraI GACGTC 1 cut(s) 1866
Zsp2I ATGCAT 2 cut(s) 169, 2110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.