Rh4AG429200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011145
Physical Location & Seq
Reverse (-)
72466926 .. 72469280
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG429200.1

Sequence Viewer

Length: 2355 bp
ATGAAGCCAACTGAAGAAGAAGAAGAAGGCTTCTTTCTATTCATCATCATCATCTTCCCCAAGATGCTGTTACTTCTTCGCACTCTGTTCCACACAAGTTGCAGAGTCTCCTCCCTTCGAGTAAGACCTAAATACCCATCATCTAATTCCTGCTTTATCAATGCATCATCATCACTATCATCATCGCATGGTTCTCTTATAGCTTCCCCTCTGGTTTGGTTCACCAGTTTCTTCTGTATCATTCGCTTCCCATTTGTCACTAAATCCAATCCTGATATGGTTCAAGAAAACTTAAATGTAGAATCTTTGAGTCGAATTGTTCAGCTGGACTATTGGGACGACCCCAGAATTGTTAGTGTGTTTGGTTCGGCATTGGCGCCGATTTGGGTGTCAAGGTTTTTGGTGGAACTGAGAAAAGATCCCAACTTGGCATTCAAGTTGTTCAAATGGGCGAAAACCCAGACCGGGTTTTGCCACACTACTGAGTCTTATTGTATTTTGGTTCACATACTTTTTGTTGGTAGAATGTATATTGATGCCCATGAGGTTATTAGAGAGTTGGTGTTGTTGAGCCGGGGGTTGCCGGGTTTTGATGTGTTTGATGGGCTGTGGGAGACCAGGAATGTTTGTCGTCCGGGGTTTGGAGTGTTTGATGCCTTGTTTAGTGTTTTGGTTGAGCTAGGAATGCTTGAGAAAGCAAGTGAGTGCTTCTTGAGGATGAGGAAGTGTAGAGTTTTGCCGAAAGTGCGATCTTGTAATGCCCTTTTGCACGGGCTTTCGAAGTCAGGGAAGGGGAATTTGTCAAGGCAGTTTTTTAAGGATATGCTTGGGGCTGGGATTTCCCCTTCTGTTTTCACATTCAATATAATGATTGGATATACGTGCAAAGAAGGCGATTTGGAAACCGCAAGAAGCTTGTTTGCACAAATGAAACAGTTGGGTCTTACACCTGATATTGTGACATATAATTCTCTTATTGACGGATATGGAAAGGTTGGATTATTAGATGATTCAGTTTGCATATTTGAAGAAATGAAGGATGTAGGTTGTGAACCTGATCTAATAACATACAATGCTTTGATTAATTGTTTTTGTAAATTTGAAAAAATGCCTCAAGCTTTCAATTTTCTCCGCGAGATGATGAGTAATGGCTTGAAACCGAATGTCATAACGTATAGCACGTTGATTGATGCCTTCTGTAAGGAAGGGATGATGCAAGAGGCAATTAAGATTTTTATAGACATGAAACGAGTTGGTCTTTCAGCTAATGAGTTCACCTATACTTCTTTGATTGATGCAAGTTGTAAAGCTGGAAATTTGAGCCAAGCACTGAAGTTCAGAAATGAGATGTTAGAGGCAGGAGTTAGTTTCAATATTGTAACTTATACGGCTCTACTGGATGGGCTGTGTGAAGATGGAAAGATGGAGGAAGCAGAAGACGTTTTTAGGGAGGTGCTAAACTCTGGAATAATTCCTAACCAGGAAATATGTACCGCCCTTGTTCATGGGTATGTCAAGACTAAGAAGATGGAGAATGCTACAGAATTCTTGAAGGATATCAAGGGGAAAGGCTTTAAACCAGATTTGTTACTTTATGGAACCATCATTTGGGTCCTTTGCTCTCAAAATAAGGTTGAAGAGGCTGAGCTTGTAATCAGTGAAATCAAGGATTGTGGTTTAACTGCAAATCATTTCATTTACACAACACTTATGGATGCTTATTTCAAGAAAGGAAACACCAATGCGGCACTCAATGTTTTACAGCGAATGCTGGACAACAATATTGAGGTTAGTGTGGTAACATATTGTGCACTAATTGATGGTTTGTGCAAAAAGGGGTTGCTCCAAGAGGCCATTACTTATTTTAGGACGATGTCCAACATTGGCTTGCAGCCCAATGTTGCAGTTTTTACGGCCTTAATTGATGGTCTTTGTAAAGGTAGTTGCATTGAAGCAGCTAAGGAGCTGTTTAATGAAATGCTAGACAAGGGTATGATTCCAGATAAAGCTGCTTACACCACTCTAATAGATGGAAACTTAAAGCATGGAAATCTTGAGGAAGCTTTGAGCATGCACAGGAGAATGAAAGAAATTGGTATGGAGCTTGACCTGCATGCATATACTTCCTTGATTTGGGGGCTTTCTCACCTTGGTCAGATGCAACAAGCAAAAGCATTCCTTGATGAGATGATTGGGAAGGGTATAATTCCTGATGAGATTCTCATTGTTTGTCTTGTAAGAAAATACTATGAGCTAGGGAATGTGGATGAAGCCATCAAGTTGCAGACTGAATGGCAAAACAGGGGTCTAAGAACTGGAACTTCTAATTTTGTGTTTCCTAATGCAAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

784

Amino Acids

88.21

Weight (kDa)

5.97

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 247 - 291 1e-09 PPR repeat family
PPR_1 PF12854 279 - 311 1.8e-07 PPR repeat
PPR_2 PF13041 282 - 331 1.9e-16 PPR repeat family
PPR_3 PF13812 305 - 364 6.2e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 314 - 346 7.9e-10 PPR repeat
PPR_2 PF13041 317 - 366 1.1e-17 PPR repeat family
PPR PF01535 320 - 350 2.5e-08 PPR repeat
PPR_long PF17177 336 - 442 1.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 349 - 380 1.4e-10 PPR repeat
PPR_2 PF13041 352 - 401 6.1e-18 PPR repeat family
PPR PF01535 355 - 385 2.4e-06 PPR repeat
PPR_3 PF13812 377 - 433 1.9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 383 - 416 1.8e-13 PPR repeat
PPR_2 PF13041 390 - 436 9.2e-16 PPR repeat family
PPR PF01535 390 - 419 4.1e-09 PPR repeat
PPR_long PF17177 406 - 501 6.7e-07 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 417 - 519 4.4e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 419 - 450 3.3e-09 PPR repeat
PPR PF01535 425 - 455 2e-06 PPR repeat
PPR_2 PF13041 427 - 470 2.2e-12 PPR repeat family
PPR_long PF17177 440 - 601 7.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 448 - 493 3.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 454 - 484 3.3e-09 PPR repeat
PPR_2 PF13041 458 - 494 1.9e-08 PPR repeat family
PPR PF01535 460 - 490 2e-07 PPR repeat
PPR_3 PF13812 481 - 538 1.3e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 551 - 606 5e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 563 - 611 3.4e-13 PPR repeat family
PPR_long PF17177 576 - 731 3.9e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 588 - 642 9.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 594 - 625 3.2e-08 PPR repeat
TPR_24 PF23276 596 - 694 8.1e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 598 - 646 2.8e-12 PPR repeat family
PPR PF01535 600 - 629 5.5e-06 PPR repeat
PPR_1 PF12854 629 - 660 4.5e-07 PPR repeat
PPR_2 PF13041 632 - 678 1.8e-12 PPR repeat family
PPR PF01535 636 - 664 3.9e-06 PPR repeat
PPR PF01535 671 - 699 7.1e-07 PPR repeat
PPR_2 PF13041 671 - 715 5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02150 AT2G02150
fragaria_vesca FvH4_4g36310 FvH4_4g36310
malus_domestica MD13G1010200.v1.1
prunus_persica Prupe.1G342600_v2.0.a1
pyrus_communis pycom13g00850
rosa_chinensis RchiOBHm_Chr4g0446071
rosa_laevigata RLG00000005694
rosa_multiflora Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001
rosa_roxburghii Rroxscaffold_5G00386480
rosa_rugosa Rorug04G0366900 Rorug04G0367000 Rorug04G0367100
rosa_samantha Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900
rosa_wichuraiana Rw4G036670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2118
AccB1I GGYRCC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 1608
AccII CGCG 1 cut(s) 1134
AciI CCGC 4 cut(s) 906, 1132, 1494, 1745
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 4 cut(s) 796, 1097, 1315, 1544
AcuI CTGAAG 2 cut(s) 33, 1352
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 1 cut(s) 1492
AfiI CCNNNNNNNGG 4 cut(s) 465, 641, 1608, 2133
AjnI CCWGG 2 cut(s) 617, 1479
AjuI GAANNNNNNNTTGG 4 cut(s) 416, 448, 1591, 1623
Alw21I GWGCWC 1 cut(s) 1813
Alw26I GTCTC 2 cut(s) 112, 608
Alw44I GTGCAC 1 cut(s) 1809
AlwI GGATC 1 cut(s) 413
AoxI GGCC 2 cut(s) 1851, 1914
ApaLI GTGCAC 1 cut(s) 1809
ApeKI GCWGC 3 cut(s) 1891, 1955, 2009
ApoI RAATTY 4 cut(s) 796, 1097, 1315, 1544
ArsI GACNNNNNNTTYG 2 cut(s) 2290, 2322
AseI ATTAAT 1 cut(s) 1083
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 1612
AsuC2I CCSGG 4 cut(s) 466, 575, 585, 636
AsuHPI GGTGA 3 cut(s) 214, 1267, 2138
AsuII TTCGAA 1 cut(s) 779
AvaII GGWCC 1 cut(s) 1612
BaeGI GKGCMC 1 cut(s) 1813
BanI GGYRCC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 1443
Bbv12I GWGCWC 1 cut(s) 1813
BbvI GCAGC 3 cut(s) 1903, 1967, 1996
BceAI ACGGC 2 cut(s) 1404, 1929
BciT130I CCWGG 2 cut(s) 619, 1481
BcnI CCSGG 4 cut(s) 466, 575, 585, 636
BcoDI GTCTC 2 cut(s) 112, 608
BfaI CTAG 3 cut(s) 680, 1982, 2255
BfmI CTRYAG 1 cut(s) 1539
BfoI RGCGCY 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 2118
BisI GCNGC 4 cut(s) 1746, 1892, 1956, 2010
BlpI GCTNAGC 1 cut(s) 1644
BlsI GCNGC 4 cut(s) 1747, 1893, 1957, 2011
Bme1390I CCNGG 6 cut(s) 466, 575, 585, 619, 636, 1481
Bme18I GGWCC 1 cut(s) 1612
BmgT120I GGNCC 1 cut(s) 1612
BmiI GGNNCC 3 cut(s) 378, 1600, 1613
BmrFI CCNGG 6 cut(s) 466, 575, 585, 619, 636, 1481
BmsI GCATC 9 cut(s) 54, 173, 526, 643, 1180, 1203, 1285, 1705, 2148
BpiI GAAGAC 1 cut(s) 1443
Bpu10I CCTNAGC 1 cut(s) 1959
Bpu1102I GCTNAGC 1 cut(s) 1644
Bpu14I TTCGAA 1 cut(s) 779
BpuEI CTTGAG 4 cut(s) 710, 733, 1098, 2075
BpuMI CCSGG 4 cut(s) 466, 575, 585, 636
BsaAI YACGTR 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 3 cut(s) 574, 635, 2149
Bsc4I CCNNNNNNNGG 4 cut(s) 465, 641, 1608, 2133
Bse1I ACTGG 3 cut(s) 225, 1401, 2320
BseBI CCWGG 2 cut(s) 619, 1481
BseDI CCNNGG 3 cut(s) 574, 635, 2149
BseGI GGATG 6 cut(s) 723, 1045, 1215, 1405, 1720, 2272
BseLI CCNNNNNNNGG 4 cut(s) 465, 641, 1608, 2133
BseMII CTCAG 3 cut(s) 401, 474, 1635
BseNI ACTGG 3 cut(s) 225, 1401, 2320
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 1813
BseXI GCAGC 3 cut(s) 1903, 1967, 1996
BseYI CCCAGC 1 cut(s) 833
Bsh1236I CGCG 1 cut(s) 1134
BshFI GGCC 2 cut(s) 1853, 1916
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 1813
BsiSI CCGG 4 cut(s) 465, 574, 584, 635
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 4 cut(s) 465, 641, 1608, 2133
BsmAI GTCTC 2 cut(s) 112, 608
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 5 cut(s) 431, 690, 1540, 1773, 2174
BsnI GGCC 2 cut(s) 1853, 1916
Bso31I GGTCTC 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 779
Bsp1286I GDGCHC 1 cut(s) 1813
Bsp143I GATC 3 cut(s) 418, 749, 1057
Bsp1720I GCTNAGC 1 cut(s) 1644
BspACI CCGC 4 cut(s) 906, 1132, 1494, 1745
BspANI GGCC 2 cut(s) 1853, 1916
BspCNI CTCAG 3 cut(s) 402, 475, 1636
BspFNI CGCG 1 cut(s) 1134
BspLI GGNNCC 3 cut(s) 378, 1600, 1613
BspMI ACCTGC 1 cut(s) 2118
BspPI GGATC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 779
BspT107I GGYRCC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 608
BsrI ACTGG 3 cut(s) 225, 1401, 2320
BssECI CCNNGG 3 cut(s) 574, 635, 2149
BssMI GATC 3 cut(s) 418, 749, 1057
BssNI GRCGYC 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 2149
Bst2UI CCWGG 2 cut(s) 619, 1481
Bst4CI ACNGT 1 cut(s) 936
Bst6I CTCTTC 1 cut(s) 1632
BstACI GRCGYC 1 cut(s) 377
BstBAI YACGTR 1 cut(s) 882
BstBI TTCGAA 1 cut(s) 779
BstC8I GCNNGC 3 cut(s) 1889, 2072, 2115
BstDEI CTNAG 6 cut(s) 410, 483, 1521, 1644, 1959, 2309
BstF5I GGATG 6 cut(s) 723, 1045, 1215, 1405, 1720, 2272
BstFNI CGCG 1 cut(s) 1134
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 3 cut(s) 421, 752, 1060
BstMAI GTCTC 2 cut(s) 112, 608
BstMBI GATC 3 cut(s) 418, 749, 1057
BstMWI GCNNNNNNNGC 4 cut(s) 685, 745, 891, 2110
BstNI CCWGG 2 cut(s) 619, 1481
BstNSI RCATGY 2 cut(s) 2074, 2117
BstSCI CCNGG 6 cut(s) 464, 573, 583, 617, 634, 1479
BstSFI CTRYAG 1 cut(s) 1539
BstSLI GKGCMC 1 cut(s) 1813
BstUI CGCG 1 cut(s) 1134
BstV1I GCAGC 3 cut(s) 1903, 1967, 1996
BstV2I GAAGAC 1 cut(s) 1443
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 2 cut(s) 1853, 1916
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 6 cut(s) 723, 1045, 1215, 1405, 1720, 2272
BtsIMutI CAGTG 2 cut(s) 1328, 1663
BveI ACCTGC 1 cut(s) 2118
Cac8I GCNNGC 3 cut(s) 1889, 2072, 2115
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 1612
Csp6I GTAC 1 cut(s) 1491
CspCI CAANNNNNGTGG 4 cut(s) 80, 115, 1654, 1689
CviAII CATG 7 cut(s) 188, 542, 1243, 1505, 2045, 2071, 2114
CviQI GTAC 1 cut(s) 1491
DdeI CTNAG 6 cut(s) 410, 483, 1521, 1644, 1959, 2309
DinI GGCGCC 1 cut(s) 378
DpnI GATC 3 cut(s) 420, 751, 1059
DpnII GATC 3 cut(s) 418, 749, 1057
DraI TTTAAA 1 cut(s) 1576
Eam1104I CTCTTC 1 cut(s) 1632
EarI CTCTTC 1 cut(s) 1632
Eco130I CCWWGG 1 cut(s) 2149
Eco31I GGTCTC 1 cut(s) 608
Eco32I GATATC 1 cut(s) 1558
Eco47I GGWCC 1 cut(s) 1612
Eco57I CTGAAG 2 cut(s) 33, 1352
EcoO109I RGGNCCY 1 cut(s) 1612
EcoRI GAATTC 1 cut(s) 1544
EcoRII CCWGG 2 cut(s) 617, 1479
EcoRV GATATC 1 cut(s) 1558
EcoT14I CCWWGG 1 cut(s) 2149
EcoT22I ATGCAT 2 cut(s) 166, 2119
EgeI GGCGCC 1 cut(s) 378
EheI GGCGCC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 2149
FaeI CATG 7 cut(s) 191, 545, 1246, 1508, 2048, 2074, 2117
FalI AAGNNNNNCTT 2 cut(s) 2163, 2195
FaqI GGGAC 1 cut(s) 350
FatI CATG 7 cut(s) 187, 541, 1242, 1504, 2044, 2070, 2113
Fnu4HI GCNGC 4 cut(s) 1746, 1892, 1956, 2010
FokI GGATG 6 cut(s) 730, 1052, 1222, 1412, 1727, 2279
Fsp4HI GCNGC 4 cut(s) 1746, 1892, 1956, 2010
FspBI CTAG 3 cut(s) 680, 1982, 2255
GlaI GCGC 1 cut(s) 378
GluI GCNGC 4 cut(s) 1746, 1892, 1956, 2010
GsaI CCCAGC 1 cut(s) 837
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 2 cut(s) 1853, 1916
HapII CCGG 4 cut(s) 465, 574, 584, 635
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 7 cut(s) 191, 545, 1246, 1508, 2048, 2074, 2117
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 3 cut(s) 913, 1116, 2061
HinfI GANTC 7 cut(s) 105, 302, 310, 485, 1010, 1996, 2218
HpaII CCGG 4 cut(s) 465, 574, 584, 635
HphI GGTGA 3 cut(s) 214, 1267, 2138
Hpy166II GTNNAC 5 cut(s) 222, 505, 1052, 1275, 1811
Hpy188I TCNGA 2 cut(s) 1340, 2157
Hpy8I GTNNAC 5 cut(s) 222, 505, 1052, 1275, 1811
HpyCH4III ACNGT 1 cut(s) 936
HpyCH4IV ACGT 4 cut(s) 881, 1172, 1181, 1440
HpyF10VI GCNNNNNNNGC 4 cut(s) 685, 745, 891, 2110
HpyF3I CTNAG 6 cut(s) 410, 483, 1521, 1644, 1959, 2309
HpySE526I ACGT 4 cut(s) 881, 1172, 1181, 1440
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 7 cut(s) 191, 545, 1246, 1508, 2048, 2074, 2117
HspAI GCGC 1 cut(s) 377
KasI GGCGCC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 418, 749, 1057
LmnI GCTCC 3 cut(s) 1848, 1963, 2101
Lsp1109I GCAGC 3 cut(s) 1903, 1967, 1996
LweI GCATC 9 cut(s) 54, 173, 526, 643, 1180, 1203, 1285, 1705, 2148
MaeI CTAG 3 cut(s) 680, 1982, 2255
MaeII ACGT 4 cut(s) 881, 1172, 1181, 1440
MaeIII GTNAC 6 cut(s) 69, 256, 958, 1378, 1587, 1798
MalI GATC 3 cut(s) 420, 751, 1059
MboI GATC 3 cut(s) 418, 749, 1057
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 1813
Mly113I GGCGCC 1 cut(s) 377
MlyI GAGTC 3 cut(s) 114, 319, 494
MmeI TCCRAC 2 cut(s) 976, 1902
Mph1103I ATGCAT 2 cut(s) 166, 2119
MslI CAYNNNNRTG 1 cut(s) 1509
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 4 cut(s) 465, 574, 584, 635
MspR9I CCNGG 6 cut(s) 466, 575, 585, 619, 636, 1481
Mva1269I GAATGC 5 cut(s) 431, 690, 1540, 1773, 2174
MvaI CCWGG 2 cut(s) 619, 1481
MvnI CGCG 1 cut(s) 1134
MwoI GCNNNNNNNGC 4 cut(s) 685, 745, 891, 2110
NarI GGCGCC 1 cut(s) 377
NciI CCSGG 4 cut(s) 466, 575, 585, 636
NdeII GATC 3 cut(s) 418, 749, 1057
NlaIII CATG 7 cut(s) 191, 545, 1246, 1508, 2048, 2074, 2117
NlaIV GGNNCC 3 cut(s) 378, 1600, 1613
NmuCI GTSAC 2 cut(s) 256, 958
NsiI ATGCAT 2 cut(s) 166, 2119
NspI RCATGY 2 cut(s) 2074, 2117
NspV TTCGAA 1 cut(s) 779
PaeI GCATGC 2 cut(s) 2074, 2117
PcsI WCGNNNNNNNCGW 1 cut(s) 1178
PctI GAATGC 5 cut(s) 431, 690, 1540, 1773, 2174
PfeI GAWTC 4 cut(s) 302, 1010, 1996, 2218
PflFI GACNNNGTC 1 cut(s) 1873
PflMI CCANNNNNTGG 1 cut(s) 1608
PkrI GCNGC 4 cut(s) 1747, 1893, 1957, 2011
PleI GAGTC 3 cut(s) 113, 318, 493
PluTI GGCGCC 1 cut(s) 380
PpsI GAGTC 3 cut(s) 113, 318, 493
Ppu21I YACGTR 1 cut(s) 882
PpuMI RGGWCCY 1 cut(s) 1612
PshBI ATTAAT 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 1612
Psp6I CCWGG 2 cut(s) 617, 1479
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 2 cut(s) 617, 1479
PspN4I GGNNCC 3 cut(s) 378, 1600, 1613
PspPI GGNCC 1 cut(s) 1612
PspPPI RGGWCCY 1 cut(s) 1612
PsuI RGATCY 1 cut(s) 418
PsyI GACNNNGTC 1 cut(s) 1873
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 1 cut(s) 1492
RsaNI GTAC 1 cut(s) 1491
RseI CAYNNNNRTG 1 cut(s) 1509
SatI GCNGC 4 cut(s) 1746, 1892, 1956, 2010
Sau3AI GATC 3 cut(s) 418, 749, 1057
Sau96I GGNCC 1 cut(s) 1612
SchI GAGTC 3 cut(s) 114, 319, 494
ScrFI CCNGG 6 cut(s) 466, 575, 585, 619, 636, 1481
SduI GDGCHC 1 cut(s) 1813
SfaNI GCATC 9 cut(s) 54, 173, 526, 643, 1180, 1203, 1285, 1705, 2148
SfcI CTRYAG 1 cut(s) 1539
SfoI GGCGCC 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 779
SinI GGWCC 1 cut(s) 1612
SmiMI CAYNNNNRTG 1 cut(s) 1509
SmlI CTYRAG 4 cut(s) 689, 712, 1113, 2054
SmoI CTYRAG 4 cut(s) 689, 712, 1113, 2054
SphI GCATGC 2 cut(s) 2074, 2117
SsiI CCGC 4 cut(s) 906, 1132, 1494, 1745
SspDI GGCGCC 1 cut(s) 376
SspI AATATT 2 cut(s) 1375, 1783
SspMI CTAG 3 cut(s) 680, 1982, 2255
StyD4I CCNGG 6 cut(s) 464, 573, 583, 617, 634, 1479
StyI CCWWGG 1 cut(s) 2149
TaaI ACNGT 1 cut(s) 936
TaiI ACGT 4 cut(s) 884, 1175, 1184, 1443
TaqI TCGA 3 cut(s) 118, 313, 779
TauI GCSGC 1 cut(s) 1748
TfiI GAWTC 4 cut(s) 302, 1010, 1996, 2218
TscAI CASTG 2 cut(s) 1335, 1663
TseFI GTSAC 2 cut(s) 256, 958
TseI GCWGC 3 cut(s) 1891, 1955, 2009
Tsp45I GTSAC 2 cut(s) 256, 958
TspGWI ACGGA 1 cut(s) 996
TspRI CASTG 2 cut(s) 1335, 1663
Tth111I GACNNNGTC 1 cut(s) 1873
Van91I CCANNNNNTGG 1 cut(s) 1608
VneI GTGCAC 1 cut(s) 1809
VpaK11BI GGWCC 1 cut(s) 1612
VspI ATTAAT 1 cut(s) 1083
XapI RAATTY 4 cut(s) 796, 1097, 1315, 1544
XceI RCATGY 2 cut(s) 2074, 2117
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 3 cut(s) 680, 1982, 2255
Zsp2I ATGCAT 2 cut(s) 166, 2119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.