Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02150 AT2G02150 |
| fragaria_vesca | FvH4_4g36310 FvH4_4g36310 |
| malus_domestica | MD13G1010200.v1.1 |
| prunus_persica | Prupe.1G342600_v2.0.a1 |
| pyrus_communis | pycom13g00850 |
| rosa_chinensis | RchiOBHm_Chr4g0446071 |
| rosa_laevigata | RLG00000005694 |
| rosa_multiflora | Rmu_sc0007511.1_g000004 Rmu_sc0013085.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00386480 |
| rosa_rugosa | Rorug04G0366900 Rorug04G0367000 Rorug04G0367100 |
| rosa_samantha | Rh4AG429200 Rh4BG438700 Rh4CG456000 Rh4DG436900 |
| rosa_wichuraiana | Rw4G036670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1103 |
| AccB1I | GGYRCC | 1 cut(s) | 445 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1677 |
| AccI | GTMKAC | 1 cut(s) | 2189 |
| AciI | CCGC | 3 cut(s) | 643, 817, 2402 |
| AclWI | GGATC | 2 cut(s) | 404, 1753 |
| AcsI | RAATTY | 5 cut(s) | 865, 1166, 1192, 1384, 2104 |
| AcuI | CTGAAG | 2 cut(s) | 1421, 1498 |
| AcyI | GRCGYC | 1 cut(s) | 446 |
| AfaI | GTAC | 3 cut(s) | 1524, 2229, 2315 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 496, 534, 860, 1677, 1952, 2202 |
| AjnI | CCWGG | 1 cut(s) | 853 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1660, 1692 |
| Alw26I | GTCTC | 1 cut(s) | 480 |
| AlwI | GGATC | 2 cut(s) | 404, 1753 |
| Ama87I | CYCGRG | 1 cut(s) | 1181 |
| AoxI | GGCC | 4 cut(s) | 1009, 1185, 1324, 1681 |
| ApeKI | GCWGC | 2 cut(s) | 2024, 2078 |
| ApoI | RAATTY | 5 cut(s) | 865, 1166, 1192, 1384, 2104 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 803, 835 |
| AseI | ATTAAT | 4 cut(s) | 1152, 1253, 1883, 1926 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 509 |
| AspLEI | GCGC | 2 cut(s) | 77, 448 |
| AspS9I | GGNCC | 2 cut(s) | 1009, 1681 |
| AsuC2I | CCSGG | 1 cut(s) | 654 |
| AsuHPI | GGTGA | 4 cut(s) | 283, 319, 1323, 1336 |
| AvaI | CYCGRG | 1 cut(s) | 1181 |
| BanI | GGYRCC | 1 cut(s) | 445 |
| BbsI | GAAGAC | 1 cut(s) | 1504 |
| BbvI | GCAGC | 2 cut(s) | 2036, 2065 |
| BciT130I | CCWGG | 1 cut(s) | 855 |
| BciVI | GTATCC | 2 cut(s) | 964, 2282 |
| BcnI | CCSGG | 1 cut(s) | 654 |
| BcoDI | GTCTC | 1 cut(s) | 480 |
| BfaI | CTAG | 4 cut(s) | 591, 978, 2051, 2324 |
| BfoI | RGCGCY | 2 cut(s) | 78, 449 |
| BfuAI | ACCTGC | 1 cut(s) | 1103 |
| BfuI | GTATCC | 2 cut(s) | 964, 2282 |
| BisI | GCNGC | 2 cut(s) | 2025, 2079 |
| BlsI | GCNGC | 2 cut(s) | 2026, 2080 |
| BmcAI | AGTACT | 2 cut(s) | 1524, 2315 |
| Bme1390I | CCNGG | 2 cut(s) | 654, 855 |
| BmeT110I | CYCGRG | 1 cut(s) | 1181 |
| BmgT120I | GGNCC | 2 cut(s) | 1009, 1681 |
| BmiI | GGNNCC | 5 cut(s) | 447, 1669, 1682, 1962, 2406 |
| BmrFI | CCNGG | 2 cut(s) | 654, 855 |
| BpiI | GAAGAC | 1 cut(s) | 1504 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2028 |
| BpuEI | CTTGAG | 2 cut(s) | 779, 802 |
| BpuMI | CCSGG | 1 cut(s) | 654 |
| BsaHI | GRCGYC | 1 cut(s) | 446 |
| BsaI | GGTCTC | 1 cut(s) | 480 |
| BsaJI | CCNNGG | 4 cut(s) | 34, 854, 1182, 1809 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 496, 534, 860, 1677, 1952, 2202 |
| Bse1I | ACTGG | 5 cut(s) | 294, 1470, 1530, 1537, 2389 |
| BseBI | CCWGG | 1 cut(s) | 855 |
| BseDI | CCNNGG | 4 cut(s) | 34, 854, 1182, 1809 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 496, 534, 860, 1677, 1952, 2202 |
| BseMII | CTCAG | 3 cut(s) | 368, 493, 1704 |
| BseNI | ACTGG | 5 cut(s) | 294, 1470, 1530, 1537, 2389 |
| BseRI | GAGGAG | 2 cut(s) | 100, 154 |
| BseXI | GCAGC | 2 cut(s) | 2036, 2065 |
| BseYI | CCCAGC | 2 cut(s) | 902, 1379 |
| BshFI | GGCC | 4 cut(s) | 1011, 1187, 1326, 1683 |
| BshNI | GGYRCC | 1 cut(s) | 445 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1181 |
| BsiSI | CCGG | 1 cut(s) | 653 |
| BslFI | GGGAC | 1 cut(s) | 419 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 496, 534, 860, 1677, 1952, 2202 |
| BsmAI | GTCTC | 1 cut(s) | 480 |
| BsmFI | GGGAC | 1 cut(s) | 419 |
| BsmI | GAATGC | 2 cut(s) | 759, 1609 |
| BsnI | GGCC | 4 cut(s) | 1011, 1187, 1326, 1683 |
| Bso31I | GGTCTC | 1 cut(s) | 480 |
| BsoBI | CYCGRG | 1 cut(s) | 1181 |
| Bsp143I | GATC | 3 cut(s) | 409, 1745, 2176 |
| Bsp19I | CCATGG | 1 cut(s) | 34 |
| BspACI | CCGC | 3 cut(s) | 643, 817, 2402 |
| BspANI | GGCC | 4 cut(s) | 1011, 1187, 1326, 1683 |
| BspCNI | CTCAG | 3 cut(s) | 369, 492, 1705 |
| BspLI | GGNNCC | 5 cut(s) | 447, 1669, 1682, 1962, 2406 |
| BspMI | ACCTGC | 1 cut(s) | 1103 |
| BspPI | GGATC | 2 cut(s) | 404, 1753 |
| BspT107I | GGYRCC | 1 cut(s) | 445 |
| BspTNI | GGTCTC | 1 cut(s) | 480 |
| BsrI | ACTGG | 5 cut(s) | 294, 1470, 1530, 1537, 2389 |
| BssECI | CCNNGG | 4 cut(s) | 34, 854, 1182, 1809 |
| BssMI | GATC | 3 cut(s) | 409, 1745, 2176 |
| BssNAI | GTATAC | 1 cut(s) | 2190 |
| BssNI | GRCGYC | 1 cut(s) | 446 |
| BssT1I | CCWWGG | 2 cut(s) | 34, 1809 |
| Bst1107I | GTATAC | 1 cut(s) | 2190 |
| Bst2UI | CCWGG | 1 cut(s) | 855 |
| Bst4CI | ACNGT | 2 cut(s) | 1864, 2003 |
| Bst6I | CTCTTC | 3 cut(s) | 146, 193, 1701 |
| BstACI | GRCGYC | 1 cut(s) | 446 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1837 |
| BstC8I | GCNNGC | 2 cut(s) | 274, 2235 |
| BstDEI | CTNAG | 6 cut(s) | 377, 479, 1590, 1713, 2028, 2306 |
| BstDSI | CCRYGG | 1 cut(s) | 34 |
| BstH2I | RGCGCY | 2 cut(s) | 78, 449 |
| BstHHI | GCGC | 2 cut(s) | 77, 448 |
| BstKTI | GATC | 3 cut(s) | 412, 1748, 2179 |
| BstMAI | GTCTC | 1 cut(s) | 480 |
| BstMBI | GATC | 3 cut(s) | 409, 1745, 2176 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 649, 814, 850, 960, 1837 |
| BstNI | CCWGG | 1 cut(s) | 855 |
| BstSCI | CCNGG | 2 cut(s) | 652, 853 |
| BstV1I | GCAGC | 2 cut(s) | 2036, 2065 |
| BstV2I | GAAGAC | 1 cut(s) | 1504 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 469 |
| BstZ17I | GTATAC | 1 cut(s) | 2190 |
| BsuI | GTATCC | 2 cut(s) | 964, 2282 |
| BsuRI | GGCC | 4 cut(s) | 1011, 1187, 1326, 1683 |
| BtgI | CCRYGG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 4 cut(s) | 1397, 1732, 1860, 1999 |
| BveI | ACCTGC | 1 cut(s) | 1103 |
| Cac8I | GCNNGC | 2 cut(s) | 274, 2235 |
| CfoI | GCGC | 2 cut(s) | 77, 448 |
| Cfr13I | GGNCC | 2 cut(s) | 1009, 1681 |
| Csp6I | GTAC | 3 cut(s) | 1523, 2228, 2314 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2077, 2112 |
| CviAII | CATG | 5 cut(s) | 35, 611, 1312, 1574, 2114 |
| CviQI | GTAC | 3 cut(s) | 1523, 2228, 2314 |
| DdeI | CTNAG | 6 cut(s) | 377, 479, 1590, 1713, 2028, 2306 |
| DinI | GGCGCC | 1 cut(s) | 447 |
| DpnI | GATC | 3 cut(s) | 411, 1747, 2178 |
| DpnII | GATC | 3 cut(s) | 409, 1745, 2176 |
| DraI | TTTAAA | 1 cut(s) | 363 |
| Eam1104I | CTCTTC | 3 cut(s) | 146, 193, 1701 |
| EarI | CTCTTC | 3 cut(s) | 146, 193, 1701 |
| Eco130I | CCWWGG | 2 cut(s) | 34, 1809 |
| Eco147I | AGGCCT | 1 cut(s) | 1187 |
| Eco31I | GGTCTC | 1 cut(s) | 480 |
| Eco57I | CTGAAG | 2 cut(s) | 1421, 1498 |
| Eco88I | CYCGRG | 1 cut(s) | 1181 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1681 |
| EcoRII | CCWGG | 1 cut(s) | 853 |
| EcoT14I | CCWWGG | 2 cut(s) | 34, 1809 |
| EgeI | GGCGCC | 1 cut(s) | 447 |
| EheI | GGCGCC | 1 cut(s) | 447 |
| ErhI | CCWWGG | 2 cut(s) | 34, 1809 |
| FaeI | CATG | 5 cut(s) | 38, 614, 1315, 1577, 2117 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FaqI | GGGAC | 1 cut(s) | 419 |
| FatI | CATG | 5 cut(s) | 34, 610, 1311, 1573, 2113 |
| FauI | CCCGC | 1 cut(s) | 636 |
| FblI | GTMKAC | 1 cut(s) | 2189 |
| Fnu4HI | GCNGC | 2 cut(s) | 2025, 2079 |
| Fsp4HI | GCNGC | 2 cut(s) | 2025, 2079 |
| FspBI | CTAG | 4 cut(s) | 591, 978, 2051, 2324 |
| GlaI | GCGC | 2 cut(s) | 76, 447 |
| GluI | GCNGC | 2 cut(s) | 2025, 2079 |
| GsaI | CCCAGC | 2 cut(s) | 906, 1383 |
| HaeII | RGCGCY | 2 cut(s) | 78, 449 |
| HaeIII | GGCC | 4 cut(s) | 1011, 1187, 1326, 1683 |
| HapII | CCGG | 1 cut(s) | 653 |
| HhaI | GCGC | 2 cut(s) | 77, 448 |
| Hin1I | GRCGYC | 1 cut(s) | 446 |
| Hin1II | CATG | 5 cut(s) | 38, 614, 1315, 1577, 2117 |
| Hin6I | GCGC | 2 cut(s) | 75, 446 |
| HinP1I | GCGC | 2 cut(s) | 75, 446 |
| HincII | GTYRAC | 1 cut(s) | 684 |
| HindII | GTYRAC | 1 cut(s) | 684 |
| HindIII | AAGCTT | 2 cut(s) | 1700, 2130 |
| HinfI | GANTC | 7 cut(s) | 315, 371, 554, 616, 1709, 2065, 2287 |
| HpaII | CCGG | 1 cut(s) | 653 |
| HphI | GGTGA | 4 cut(s) | 283, 319, 1323, 1336 |
| Hpy166II | GTNNAC | 8 cut(s) | 291, 424, 574, 684, 1344, 1860, 2190, 2368 |
| Hpy188I | TCNGA | 3 cut(s) | 54, 515, 1714 |
| Hpy188III | TCNNGA | 7 cut(s) | 353, 781, 1424, 1481, 2069, 2126, 2279 |
| Hpy8I | GTNNAC | 8 cut(s) | 291, 424, 574, 684, 1344, 1860, 2190, 2368 |
| Hpy99I | CGWCG | 1 cut(s) | 18 |
| HpyCH4III | ACNGT | 2 cut(s) | 1864, 2003 |
| HpyCH4IV | ACGT | 1 cut(s) | 1128 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 649, 814, 850, 960, 1837 |
| HpyF3I | CTNAG | 6 cut(s) | 377, 479, 1590, 1713, 2028, 2306 |
| HpySE526I | ACGT | 1 cut(s) | 1128 |
| Hsp92I | GRCGYC | 1 cut(s) | 446 |
| Hsp92II | CATG | 5 cut(s) | 38, 614, 1315, 1577, 2117 |
| HspAI | GCGC | 2 cut(s) | 75, 446 |
| KasI | GGCGCC | 1 cut(s) | 445 |
| Kzo9I | GATC | 3 cut(s) | 409, 1745, 2176 |
| LmnI | GCTCC | 4 cut(s) | 61, 1694, 1917, 2032 |
| Lsp1109I | GCAGC | 2 cut(s) | 2036, 2065 |
| MaeI | CTAG | 4 cut(s) | 591, 978, 2051, 2324 |
| MaeII | ACGT | 1 cut(s) | 1128 |
| MaeIII | GTNAC | 6 cut(s) | 325, 1027, 1447, 1656, 1867, 1997 |
| MalI | GATC | 3 cut(s) | 411, 1747, 2178 |
| MboI | GATC | 3 cut(s) | 409, 1745, 2176 |
| MboII | GAAGA | 9 cut(s) | 79, 122, 133, 180, 802, 1109, 1504, 1718, 2114 |
| Mly113I | GGCGCC | 1 cut(s) | 446 |
| MlyI | GAGTC | 1 cut(s) | 1718 |
| MmeI | TCCRAC | 1 cut(s) | 1045 |
| MroXI | GAANNNNTTC | 1 cut(s) | 509 |
| MspI | CCGG | 1 cut(s) | 653 |
| MspR9I | CCNGG | 2 cut(s) | 654, 855 |
| Mva1269I | GAATGC | 2 cut(s) | 759, 1609 |
| MvaI | CCWGG | 1 cut(s) | 855 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 649, 814, 850, 960, 1837 |
| NarI | GGCGCC | 1 cut(s) | 446 |
| NciI | CCSGG | 1 cut(s) | 654 |
| NcoI | CCATGG | 1 cut(s) | 34 |
| NdeII | GATC | 3 cut(s) | 409, 1745, 2176 |
| NlaIII | CATG | 5 cut(s) | 38, 614, 1315, 1577, 2117 |
| NlaIV | GGNNCC | 5 cut(s) | 447, 1669, 1682, 1962, 2406 |
| NmeAIII | GCCGAG | 1 cut(s) | 182 |
| NmuCI | GTSAC | 3 cut(s) | 325, 1027, 1997 |
| PceI | AGGCCT | 1 cut(s) | 1187 |
| PctI | GAATGC | 2 cut(s) | 759, 1609 |
| PdmI | GAANNNNTTC | 1 cut(s) | 509 |
| PfeI | GAWTC | 6 cut(s) | 315, 371, 554, 616, 2065, 2287 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1677 |
| PkrI | GCNGC | 2 cut(s) | 2026, 2080 |
| PleI | GAGTC | 1 cut(s) | 1717 |
| PluTI | GGCGCC | 1 cut(s) | 449 |
| PpsI | GAGTC | 1 cut(s) | 1717 |
| PshBI | ATTAAT | 4 cut(s) | 1152, 1253, 1883, 1926 |
| Psp6I | CCWGG | 1 cut(s) | 853 |
| PspFI | CCCAGC | 2 cut(s) | 902, 1379 |
| PspGI | CCWGG | 1 cut(s) | 853 |
| PspN4I | GGNNCC | 5 cut(s) | 447, 1669, 1682, 1962, 2406 |
| PspPI | GGNCC | 2 cut(s) | 1009, 1681 |
| RsaI | GTAC | 3 cut(s) | 1524, 2229, 2315 |
| RsaNI | GTAC | 3 cut(s) | 1523, 2228, 2314 |
| SatI | GCNGC | 2 cut(s) | 2025, 2079 |
| Sau3AI | GATC | 3 cut(s) | 409, 1745, 2176 |
| Sau96I | GGNCC | 2 cut(s) | 1009, 1681 |
| ScaI | AGTACT | 2 cut(s) | 1524, 2315 |
| SchI | GAGTC | 1 cut(s) | 1718 |
| ScrFI | CCNGG | 2 cut(s) | 654, 855 |
| SfoI | GGCGCC | 1 cut(s) | 447 |
| SmiI | ATTTAAAT | 1 cut(s) | 363 |
| SmlI | CTYRAG | 2 cut(s) | 758, 781 |
| SmoI | CTYRAG | 2 cut(s) | 758, 781 |
| SseBI | AGGCCT | 1 cut(s) | 1187 |
| SsiI | CCGC | 3 cut(s) | 643, 817, 2402 |
| SspDI | GGCGCC | 1 cut(s) | 445 |
| SspI | AATATT | 2 cut(s) | 1557, 2244 |
| SspMI | CTAG | 4 cut(s) | 591, 978, 2051, 2324 |
| StuI | AGGCCT | 1 cut(s) | 1187 |
| StyD4I | CCNGG | 2 cut(s) | 652, 853 |
| StyI | CCWWGG | 2 cut(s) | 34, 1809 |
| SwaI | ATTTAAAT | 1 cut(s) | 363 |
| TaaI | ACNGT | 2 cut(s) | 1864, 2003 |
| TaiI | ACGT | 1 cut(s) | 1131 |
| TaqI | TCGA | 5 cut(s) | 172, 191, 313, 521, 1439 |
| TatI | WGTACW | 2 cut(s) | 1522, 2313 |
| TfiI | GAWTC | 6 cut(s) | 315, 371, 554, 616, 2065, 2287 |
| TscAI | CASTG | 4 cut(s) | 1404, 1732, 1867, 2006 |
| TseFI | GTSAC | 3 cut(s) | 325, 1027, 1997 |
| TseI | GCWGC | 2 cut(s) | 2024, 2078 |
| Tsp45I | GTSAC | 3 cut(s) | 325, 1027, 1997 |
| TspGWI | ACGGA | 1 cut(s) | 1190 |
| TspRI | CASTG | 4 cut(s) | 1404, 1732, 1867, 2006 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1677 |
| VspI | ATTAAT | 4 cut(s) | 1152, 1253, 1883, 1926 |
| XapI | RAATTY | 5 cut(s) | 865, 1166, 1192, 1384, 2104 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 469 |
| XmiI | GTMKAC | 1 cut(s) | 2189 |
| XmnI | GAANNNNTTC | 1 cut(s) | 509 |
| XspI | CTAG | 4 cut(s) | 591, 978, 2051, 2324 |
| ZrmI | AGTACT | 2 cut(s) | 1524, 2315 |