Rh4AG429000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018308
Physical Location & Seq
Reverse (-)
72462907 .. 72463678
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG429000.1

Sequence Viewer

Length: 495 bp
ATGCCAACTCCTCCTCCTCCTCCTCCAAACCCTCTCACATTTCAATCTGTCGTTGCAGCTCTTTGTATTGCACCTATATTTTTTCTAATAACCGAAGCATTAGATCATACAACTTGTGCAGTTTTGATCCCATTTATCTTTGTAGCTGTTTGTTTAGTGGTCTTCTATGCTGTTGCAATTGTTGCTCAGATTATTGGCGCCGGACGATTCTCAAGTCTCTTGTTATCTCAAACACACAGACGGCTTAATTATCCTGATCAAATTCAGATCTACGTGTATCCGGCCGTCCGGCCTGGACACAATGACCAAGCTTGGCAAGATGGCTTGGAGAAGGTGCTACCACCACCCACTATTTACAGTAAAACTCAACATGAAGGTGAAGCTCATGAAGAAGGAGGGGTAGTGAAAAGTTGTAAAAGGAGTAGTAGTTGGAAACAGTGTGCTATTTGCATGGAGGATTTTGTGGAGGATTTTGTGAATAACCGTAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

6.18

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53010
rosa_chinensis RchiOBHm_Chr4g0446061
rosa_multiflora Rmu_co8105996.1_g000001 Rmu_sc0007511.1_g000003
rosa_roxburghii Rroxscaffold_5G00386470
rosa_rugosa Rorug04G0366900
rosa_samantha Rh4AG429000 Rh4BG438500 Rh4CG455800
rosa_wichuraiana Rw4G036660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 198
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 4 cut(s) 59, 146, 311, 383
AluI AGCT 4 cut(s) 59, 146, 311, 383
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 121
AoxI GGCC 2 cut(s) 282, 290
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 389
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 314
BceAI ACGGC 2 cut(s) 257, 269
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 201
BfuI GTATCC 1 cut(s) 288
BglII AGATCT 1 cut(s) 267
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 198
BsaXI ACNNNNNCTCC 5 cut(s) 28, 387, 412, 417, 442
BseBI CCWGG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 3 cut(s) 6, 9, 12
BseX3I CGGCCG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 284, 292
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 201, 281, 289
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 284, 292
Bsp143I GATC 4 cut(s) 103, 126, 256, 267
BspANI GGCC 2 cut(s) 284, 292
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 197
BssMI GATC 4 cut(s) 103, 126, 256, 267
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 359, 438, 485
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 4 cut(s) 106, 129, 259, 270
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 103, 126, 256, 267
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BstZI CGGCCG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 284, 292
BtsIMutI CAGTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 200
CviAII CATG 3 cut(s) 371, 386, 451
CviJI RGCY 8 cut(s) 59, 146, 244, 284, 292, 311, 324, 383
CviKI_1 RGCY 8 cut(s) 59, 146, 244, 284, 292, 311, 324, 383
DdeI CTNAG 1 cut(s) 186
DinI GGCGCC 1 cut(s) 199
DpnI GATC 4 cut(s) 105, 128, 258, 269
DpnII GATC 4 cut(s) 103, 126, 256, 267
EaeI YGGCCR 1 cut(s) 282
EagI CGGCCG 1 cut(s) 282
EclXI CGGCCG 1 cut(s) 282
Eco52I CGGCCG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 292
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FaeI CATG 3 cut(s) 374, 389, 454
FaiI YATR 6 cut(s) 77, 108, 168, 372, 387, 452
FatI CATG 3 cut(s) 370, 385, 450
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 2 cut(s) 284, 292
HapII CCGG 3 cut(s) 201, 281, 289
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 374, 389, 454
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 1 cut(s) 207
HpaII CCGG 3 cut(s) 201, 281, 289
HphI GGTGA 1 cut(s) 389
Hpy188I TCNGA 2 cut(s) 189, 267
Hpy188III TCNNGA 2 cut(s) 254, 386
HpyAV CCTTC 3 cut(s) 325, 368, 386
HpyCH4III ACNGT 3 cut(s) 359, 438, 485
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 56, 71, 119, 176, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 374, 389, 454
HspAI GCGC 1 cut(s) 198
KasI GGCGCC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 103, 126, 256, 267
LpnPI CCDG 6 cut(s) 214, 267, 279, 294, 302, 306
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 1 cut(s) 273
MalI GATC 4 cut(s) 105, 128, 258, 269
MboI GATC 4 cut(s) 103, 126, 256, 267
MboII GAAGA 2 cut(s) 154, 401
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 267
MluCI AATT 3 cut(s) 177, 247, 261
Mly113I GGCGCC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 9 cut(s) 21, 24, 27, 30, 33, 42, 389, 448, 460
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 3 cut(s) 201, 281, 289
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 182
NarI GGCGCC 1 cut(s) 198
NdeII GATC 4 cut(s) 103, 126, 256, 267
NlaIII CATG 3 cut(s) 374, 389, 454
NlaIV GGNNCC 1 cut(s) 199
PagI TCATGA 1 cut(s) 385
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 58
PluTI GGCGCC 1 cut(s) 201
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 103, 126, 256, 267
ScrFI CCNGG 1 cut(s) 294
SetI ASST 8 cut(s) 61, 76, 148, 276, 313, 336, 379, 385
SfoI GGCGCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 3 cut(s) 177, 247, 261
SspDI GGCGCC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 3 cut(s) 359, 438, 485
TaiI ACGT 1 cut(s) 276
TasI AATT 3 cut(s) 177, 247, 261
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 443
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 387, 402
TspRI CASTG 1 cut(s) 443
XapI RAATTY 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.