Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8105996.1

Orthogroup ID

OG0018308

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 574

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8105996.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

tggtcttctatgctgttgcaattgttgctcagattattggcgccggacgattctcaagtctcttgttatctcaaacacacagacggcttaattatcgtgatcaaattcagatctacgtgtatccggccgtccggcctggacacaatgaccaagcttggcaagatggctcggagaaggtgctaccaccacccactatttacagtaaaactcaacatgaaggtgaagctcatgaagacgaaggaggggtagtgaaaagttgtaaaaggagtagtagttggaaacagtgtgctatttgcatggaggattttgtggagggtgagtcttgccgtgttctgcctacatgtgatcatatcttccatttgatttgtatcgactcttggttgaagcttcatccatcttgccctctttgtcgcaaatctatctgcaaatgtacctcttgtgttcttgatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001704 GO:0001707 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006464 GO:0006807 GO:0007275 GO:0007369 GO:0007498 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009653 GO:0009790 GO:0009888 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031224 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048332 GO:0048598 GO:0048646 GO:0048729 GO:0048856 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

150

Amino Acids

16.89

Weight (kDa)

7.13

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53010
rosa_chinensis	RchiOBHm_Chr4g0446061
rosa_multiflora	Rmu_co8105996.1_g000001 Rmu_sc0007511.1_g000003
rosa_roxburghii	Rroxscaffold_5G00386470
rosa_rugosa	Rorug04G0366900
rosa_samantha	Rh4AG429000 Rh4BG438500 Rh4CG455800
rosa_wichuraiana	Rw4G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	432
AflIII	ACRYGT	2 cut(s)	116, 340
AgsI	TTSAA	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	154, 226, 387
AluI	AGCT	3 cut(s)	154, 226, 387
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	125, 133
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	232, 328
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	2 cut(s)	157, 402
BceAI	ACGGC	3 cut(s)	100, 112, 311
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	2 cut(s)	99, 345
BcoDI	GTCTC	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	41
BsaXI	ACNNNNNCTCC	6 cut(s)	233, 258, 263, 288, 304, 334
Bse8I	GATNNNNATC	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	43
BseX3I	CGGCCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	127, 135
BshNI	GGYRCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	44, 124, 132
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	127, 135
Bsp143I	GATC	3 cut(s)	99, 110, 345
BspANI	GGCC	2 cut(s)	127, 135
BspCNI	CTCAG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	40
BssMI	GATC	3 cut(s)	99, 110, 345
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	202, 284
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	3 cut(s)	102, 113, 348
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	3 cut(s)	99, 110, 345
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	127, 135
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	4 cut(s)	214, 229, 297, 341
CviJI	RGCY	7 cut(s)	87, 127, 135, 154, 167, 226, 387
CviKI_1	RGCY	7 cut(s)	87, 127, 135, 154, 167, 226, 387
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	1 cut(s)	29
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	3 cut(s)	101, 112, 347
DpnII	GATC	3 cut(s)	99, 110, 345
EaeI	YGGCCR	1 cut(s)	125
EagI	CGGCCG	1 cut(s)	125
EclXI	CGGCCG	1 cut(s)	125
Eco52I	CGGCCG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaeI	CATG	4 cut(s)	217, 232, 300, 344
FaiI	YATR	6 cut(s)	11, 215, 230, 298, 342, 350
FatI	CATG	4 cut(s)	213, 228, 296, 340
FbaI	TGATCA	2 cut(s)	99, 345
FokI	GGATG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	127, 135
HapII	CCGG	3 cut(s)	44, 124, 132
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	217, 232, 300, 344
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	2 cut(s)	152, 385
HinfI	GANTC	3 cut(s)	50, 319, 373
HpaII	CCGG	3 cut(s)	44, 124, 132
HphI	GGTGA	2 cut(s)	232, 328
Hpy188I	TCNGA	3 cut(s)	32, 110, 171
Hpy188III	TCNNGA	3 cut(s)	97, 229, 445
HpyAV	CCTTC	3 cut(s)	168, 211, 232
HpyCH4III	ACNGT	2 cut(s)	202, 284
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	19, 296, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	217, 232, 300, 344
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Ksp22I	TGATCA	2 cut(s)	99, 345
Kzo9I	GATC	3 cut(s)	99, 110, 345
LpnPI	CCDG	5 cut(s)	57, 122, 137, 145, 149
MaeII	ACGT	1 cut(s)	116
MalI	GATC	3 cut(s)	101, 112, 347
MboI	GATC	3 cut(s)	99, 110, 345
MboII	GAAGA	2 cut(s)	244, 345
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	3 cut(s)	20, 90, 104
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	328, 367
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	235, 294, 306, 413, 444
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	3 cut(s)	44, 124, 132
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	25
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	3 cut(s)	99, 110, 345
NlaIII	CATG	4 cut(s)	217, 232, 300, 344
NlaIV	GGNNCC	1 cut(s)	42
NspI	RCATGY	1 cut(s)	344
PagI	TCATGA	1 cut(s)	228
PciI	ACATGT	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	50
PleI	GAGTC	2 cut(s)	327, 367
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	327, 367
Ppu21I	YACGTR	1 cut(s)	117
PscI	ACATGT	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	99, 110, 345
SchI	GAGTC	2 cut(s)	328, 367
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	7 cut(s)	119, 156, 179, 222, 228, 389, 436
SfoI	GGCGCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	20, 90, 104
SspDI	GGCGCC	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	202, 284
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	371
TasI	AATT	3 cut(s)	20, 90, 104
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	230, 245, 379
TspRI	CASTG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.