Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0018308

Physical Location & Seq

Genomic Coordinates Reverse (-)

63498154 .. 63498765

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCAACTCCTCCTCCTCCTTCTTCAAACCCTCTCACATTTCAATCTGTCGTTGCAGCTCTTTGTATTGCACCTATATTTTTTCTAATAACCGAAGCATTAGATCATACAACTTGTGCAGTTTTGATCCCATTTATCTTTGTAGCTGTTTGTTTAGTGGTCTTCTATGCTGTTGCAATTGTTGTTCAGATTATTGGCGCCGGACGATTCTCAAGTCTCTTGTTATCTCAAACACACAGACGGCTTAATTATCGTGATCAAATTCAGATCTACGTGTATCCGGCCGTCCGGCCTGGACACAATGACCAAGCTTGGCAAGATGGCTCGGAGAATGTGCTACCACCACCCACTATTTACAGTAAAACTCAACATGAAGGTGAAGCTCATGAAGACGAAGGAGGGGTAGTGAAAAGTTGTAAAAGGAGTAGTAGTTGGAAACAGTGTGCTATTTGCATGGAGGATTTTGTGGAGGGTGAGTCTTGCCGTGTTCTGCCTACATGTGATCATATCTTCCATTTGATTTGTATCGACTCTTGGTTGAAGCTTCATCCATCTTGCCCTATTTGTCGCAAATCTATCTGCAAATGTACCTCTTGTGTTCTTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001704 GO:0001707 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006464 GO:0006807 GO:0007275 GO:0007369 GO:0007498 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009653 GO:0009790 GO:0009888 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031224 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048332 GO:0048598 GO:0048646 GO:0048729 GO:0048856 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

203

Amino Acids

22.52

Weight (kDa)

6.21

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	147 - 190	1.9e-13	Ring finger domain
zf-RING_11	PF17123	147 - 176	3.5e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	147 - 189	3.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	151 - 190	2.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53010
rosa_chinensis	RchiOBHm_Chr4g0446061
rosa_multiflora	Rmu_co8105996.1_g000001 Rmu_sc0007511.1_g000003
rosa_roxburghii	Rroxscaffold_5G00386470
rosa_rugosa	Rorug04G0366900
rosa_samantha	Rh4AG429000 Rh4BG438500 Rh4CG455800
rosa_wichuraiana	Rw4G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	589
AflIII	ACRYGT	2 cut(s)	273, 497
AgsI	TTSAA	3 cut(s)	27, 44, 541
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	5 cut(s)	59, 146, 311, 383, 544
AluI	AGCT	5 cut(s)	59, 146, 311, 383, 544
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	282, 290
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	389, 485
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	154, 396
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	314, 559
BceAI	ACGGC	3 cut(s)	257, 269, 468
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	288
BclI	TGATCA	2 cut(s)	256, 502
BcoDI	GTCTC	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	154, 396
BpuEI	CTTGAG	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	198
BsaXI	ACNNNNNCTCC	7 cut(s)	28, 390, 415, 420, 445, 461, 491
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	547
BseJI	GATNNNNATC	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	6
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	284, 292
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	201, 281, 289
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	284, 292
Bsp143I	GATC	5 cut(s)	103, 126, 256, 267, 502
BspANI	GGCC	2 cut(s)	284, 292
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	197
BssMI	GATC	5 cut(s)	103, 126, 256, 267, 502
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	359, 441
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	547
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	5 cut(s)	106, 129, 259, 270, 505
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	103, 126, 256, 267, 502
BstMCI	CGRYCG	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	2 cut(s)	154, 396
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	284, 292
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	4 cut(s)	371, 386, 454, 498
CviJI	RGCY	9 cut(s)	59, 146, 244, 284, 292, 311, 324, 383, 544
CviKI_1	RGCY	9 cut(s)	59, 146, 244, 284, 292, 311, 324, 383, 544
CviQI	GTAC	1 cut(s)	588
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	5 cut(s)	105, 128, 258, 269, 504
DpnII	GATC	5 cut(s)	103, 126, 256, 267, 502
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
EclXI	CGGCCG	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaeI	CATG	4 cut(s)	374, 389, 457, 501
FaiI	YATR	8 cut(s)	77, 108, 168, 372, 387, 455, 499, 507
FatI	CATG	4 cut(s)	370, 385, 453, 497
FbaI	TGATCA	2 cut(s)	256, 502
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	284, 292
HapII	CCGG	3 cut(s)	201, 281, 289
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	374, 389, 457, 501
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	2 cut(s)	309, 542
HinfI	GANTC	3 cut(s)	207, 476, 530
HpaII	CCGG	3 cut(s)	201, 281, 289
HphI	GGTGA	2 cut(s)	389, 485
Hpy188I	TCNGA	3 cut(s)	189, 267, 328
Hpy188III	TCNNGA	3 cut(s)	254, 386, 602
HpyAV	CCTTC	3 cut(s)	30, 368, 389
HpyCH4III	ACNGT	2 cut(s)	359, 441
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	6 cut(s)	56, 71, 119, 176, 453, 582
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	374, 389, 457, 501
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
Ksp22I	TGATCA	2 cut(s)	256, 502
Kzo9I	GATC	5 cut(s)	103, 126, 256, 267, 502
LpnPI	CCDG	5 cut(s)	214, 279, 294, 302, 306
Lsp1109I	GCAGC	1 cut(s)	68
MaeII	ACGT	1 cut(s)	273
MalI	GATC	5 cut(s)	105, 128, 258, 269, 504
MboI	GATC	5 cut(s)	103, 126, 256, 267, 502
MboII	GAAGA	4 cut(s)	15, 154, 401, 502
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	3 cut(s)	177, 247, 261
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	485, 524
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	8 cut(s)	21, 24, 27, 42, 392, 451, 463, 601
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	3 cut(s)	201, 281, 289
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	294
NarI	GGCGCC	1 cut(s)	198
NdeII	GATC	5 cut(s)	103, 126, 256, 267, 502
NlaIII	CATG	4 cut(s)	374, 389, 457, 501
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	501
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	484, 524
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	2 cut(s)	484, 524
Ppu21I	YACGTR	1 cut(s)	274
PscI	ACATGT	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	103, 126, 256, 267, 502
SchI	GAGTC	2 cut(s)	485, 524
ScrFI	CCNGG	1 cut(s)	294
SetI	ASST	9 cut(s)	61, 76, 148, 276, 313, 379, 385, 546, 593
SfoI	GGCGCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	177, 247, 261
SspDI	GGCGCC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	359, 441
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	177, 247, 261
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	446
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	387, 402, 536
TspRI	CASTG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.