Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0018308

Physical Location & Seq

Genomic Coordinates Reverse (-)

57966211 .. 57968117

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG438500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATGAGTTTAATATGGTCAAAGTCGTTGTGTTTAAAAAGCCAAATATGATAATTTCTCCATGTGGAGTGGTCTTCTATGCTGTTGCAATTGTTGCTCACATTATTGGCGCCGGACGATTCTCAAGTCTCTTGTTATCTCAAACACACAGACGGCTTAATTATCGTGATCAAATTCAGATCTACGTGTATCCGGCCGTCCGGCCTGGACACGATGACCAAGCTTGGCAAGATGGCTTGGAGAAGGTGCTACCACCACCCACTATTTACAGTAAAACTCAACATGAAGGTGAAGCTCATGAAGACGAAGGAGGGGTAGTGAAAAGTTGTAAAAGGAGTAGTAGTTGGAAACAGTGTGCTATTTGCATGGAGGATTTTGTGGAGGGTGAGTCTTGCCGTGTTCTGCCTACATGTGATCATATCTTCCATTTGATTTGTATCGACTCTTGGTTGAAGCTTCATCCATCTTGCCCTATTTGTCGCAAATCTATCTGCAAATGTACCTCTTGTGTTCTTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001704 GO:0001707 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006464 GO:0006807 GO:0007275 GO:0007369 GO:0007498 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009653 GO:0009790 GO:0009888 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031224 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048332 GO:0048598 GO:0048646 GO:0048729 GO:0048856 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

174

Amino Acids

19.64

Weight (kDa)

7.04

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	118 - 161	1.4e-13	Ring finger domain
zf-RING_11	PF17123	118 - 147	2.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	118 - 160	2.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	122 - 161	2.5e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53010
rosa_chinensis	RchiOBHm_Chr4g0446061
rosa_multiflora	Rmu_co8105996.1_g000001 Rmu_sc0007511.1_g000003
rosa_roxburghii	Rroxscaffold_5G00386470
rosa_rugosa	Rorug04G0366900
rosa_samantha	Rh4AG429000 Rh4BG438500 Rh4CG455800
rosa_wichuraiana	Rw4G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	502
AflIII	ACRYGT	2 cut(s)	186, 410
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	224, 296, 457
AluI	AGCT	3 cut(s)	224, 296, 457
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	195, 203
ApoI	RAATTY	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	302, 398
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	67, 309
BccI	CCATC	2 cut(s)	227, 472
BceAI	ACGGC	3 cut(s)	170, 182, 381
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	201
BclI	TGATCA	2 cut(s)	169, 415
BcoDI	GTCTC	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	67, 309
BpuEI	CTTGAG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	111
BsaXI	ACNNNNNCTCC	6 cut(s)	303, 328, 333, 358, 374, 404
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	10, 460
BseJI	GATNNNNATC	1 cut(s)	437
BseX3I	CGGCCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	197, 205
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	114, 194, 202
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	197, 205
Bsp143I	GATC	3 cut(s)	169, 180, 415
BspANI	GGCC	2 cut(s)	197, 205
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	110
BssMI	GATC	3 cut(s)	169, 180, 415
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	272, 354
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	10, 460
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	3 cut(s)	172, 183, 418
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	169, 180, 415
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	205
BstV2I	GAAGAC	2 cut(s)	67, 309
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	197, 205
BtsCI	GGATG	2 cut(s)	10, 460
BtsIMutI	CAGTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	5 cut(s)	63, 284, 299, 367, 411
CviJI	RGCY	8 cut(s)	43, 157, 197, 205, 224, 237, 296, 457
CviKI_1	RGCY	8 cut(s)	43, 157, 197, 205, 224, 237, 296, 457
CviQI	GTAC	1 cut(s)	501
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	3 cut(s)	171, 182, 417
DpnII	GATC	3 cut(s)	169, 180, 415
DraI	TTTAAA	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
FaeI	CATG	5 cut(s)	66, 287, 302, 370, 414
FaiI	YATR	9 cut(s)	17, 50, 64, 81, 285, 300, 368, 412, 420
FatI	CATG	5 cut(s)	62, 283, 298, 366, 410
FbaI	TGATCA	2 cut(s)	169, 415
FokI	GGATG	2 cut(s)	17, 447
GlaI	GCGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	197, 205
HapII	CCGG	3 cut(s)	114, 194, 202
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	66, 287, 302, 370, 414
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	2 cut(s)	222, 455
HinfI	GANTC	3 cut(s)	120, 389, 443
HpaII	CCGG	3 cut(s)	114, 194, 202
HphI	GGTGA	2 cut(s)	302, 398
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	167, 299, 515
HpyAV	CCTTC	3 cut(s)	238, 281, 302
HpyCH4III	ACNGT	2 cut(s)	272, 354
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	89, 366, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	66, 287, 302, 370, 414
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
Ksp22I	TGATCA	2 cut(s)	169, 415
Kzo9I	GATC	3 cut(s)	169, 180, 415
LpnPI	CCDG	5 cut(s)	127, 192, 207, 215, 219
MaeII	ACGT	1 cut(s)	186
MalI	GATC	3 cut(s)	171, 182, 417
MboI	GATC	3 cut(s)	169, 180, 415
MboII	GAAGA	3 cut(s)	67, 314, 415
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	4 cut(s)	54, 90, 160, 174
Mly113I	GGCGCC	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	398, 437
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	4 cut(s)	305, 364, 376, 514
MseI	TTAA	3 cut(s)	12, 36, 159
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	3 cut(s)	114, 194, 202
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	111
NdeII	GATC	3 cut(s)	169, 180, 415
NlaIII	CATG	5 cut(s)	66, 287, 302, 370, 414
NlaIV	GGNNCC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	298
PciI	ACATGT	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	397, 437
PluTI	GGCGCC	1 cut(s)	114
PpsI	GAGTC	2 cut(s)	397, 437
Ppu21I	YACGTR	1 cut(s)	187
PscI	ACATGT	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	12, 36, 159
Sau3AI	GATC	3 cut(s)	169, 180, 415
SchI	GAGTC	2 cut(s)	398, 437
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	7 cut(s)	189, 226, 249, 292, 298, 459, 506
SfoI	GGCGCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	54, 90, 160, 174
SspDI	GGCGCC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	272, 354
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	441
TasI	AATT	4 cut(s)	54, 90, 160, 174
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	12, 36, 159
Tru9I	TTAA	3 cut(s)	12, 36, 159
TscAI	CASTG	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	300, 315, 449
TspRI	CASTG	1 cut(s)	359
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.