Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018308

Physical Location & Seq

Genomic Coordinates Reverse (-)

65381476 .. 65382084

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCCAACTCCTCCTCCTCCTTCAAACCCTCTCACATTTCAATCTGTCATTGCAGCTCTTTGTATTGCACCTATATGTTTTCTAATAACCGAAGCATTAGATCATACAACTTGGGCAGTTTTGATCCCATTTATCTTTCTAGCTGTTTGTTTAGTGGTCTTCTATGCTGTTGCAATTGTTGCTCAGATTATTGGCGCCGGACGATTCTCAAGTCTCTTGTTATCTCAAACACACAGACGGCTTAATTATCGTGGTCAAATTCAGATCTACGTGTATCCGGCCGTCCGGCCTGGACACGATGACCAAGCTTGGCAAGATGGCTTGGAGAAGGTGCTACCACCACCCACTATTTACAGTAAAACTCAACAAACCCTTTTCACTACCCTAGACGAAGGAGGGGTAGTGAAAAGTTGTAAAAGGAGTAGTAGTTGGAAGCAGTGTGCTATTTGTATGGAGGATTTTGTGGAGGGTGAGTCTTGCCGTGTTCTGCCTACATGTGATCATATCTTCCATTTGATTTGTATTGACTCTTGGTTGAAGCTTCATCCATCTTGCCCTATTTGTCGCAAATCCATCTGCAAATGTACCTCTTGTGTTCTTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001704 GO:0001707 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006464 GO:0006807 GO:0007275 GO:0007369 GO:0007498 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009653 GO:0009790 GO:0009888 GO:0009987 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031224 GO:0031410 GO:0031982 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048332 GO:0048598 GO:0048646 GO:0048729 GO:0048856 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

202

Amino Acids

22.47

Weight (kDa)

7.48

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	146 - 189	1.9e-13	Ring finger domain
zf-RING_11	PF17123	146 - 175	3.4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	146 - 188	3.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	150 - 189	2.6e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53010
rosa_chinensis	RchiOBHm_Chr4g0446061
rosa_multiflora	Rmu_co8105996.1_g000001 Rmu_sc0007511.1_g000003
rosa_roxburghii	Rroxscaffold_5G00386470
rosa_rugosa	Rorug04G0366900
rosa_samantha	Rh4AG429000 Rh4BG438500 Rh4CG455800
rosa_wichuraiana	Rw4G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	586
AflIII	ACRYGT	2 cut(s)	270, 494
AgsI	TTSAA	3 cut(s)	24, 41, 538
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	4 cut(s)	56, 143, 308, 541
AluI	AGCT	4 cut(s)	56, 143, 308, 541
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	2 cut(s)	279, 287
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	3 cut(s)	311, 556, 581
BceAI	ACGGC	3 cut(s)	254, 266, 465
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	2 cut(s)	140, 386
BfoI	RGCGCY	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	195
BsaXI	ACNNNNNCTCC	7 cut(s)	28, 387, 412, 417, 442, 458, 488
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	6
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	281, 289
BshNI	GGYRCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	198, 278, 286
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	281, 289
Bsp143I	GATC	4 cut(s)	100, 123, 264, 499
BspANI	GGCC	2 cut(s)	281, 289
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	48
BssMI	GATC	4 cut(s)	100, 123, 264, 499
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	544
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	4 cut(s)	103, 126, 267, 502
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	4 cut(s)	100, 123, 264, 499
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BstZI	CGGCCG	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	281, 289
BtsCI	GGATG	1 cut(s)	544
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	8 cut(s)	56, 143, 241, 281, 289, 308, 321, 541
CviKI_1	RGCY	8 cut(s)	56, 143, 241, 281, 289, 308, 321, 541
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	1 cut(s)	183
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	4 cut(s)	102, 125, 266, 501
DpnII	GATC	4 cut(s)	100, 123, 264, 499
EaeI	YGGCCR	1 cut(s)	279
EagI	CGGCCG	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
FaeI	CATG	1 cut(s)	498
FaiI	YATR	7 cut(s)	74, 76, 105, 165, 452, 496, 504
FatI	CATG	1 cut(s)	494
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	531
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	140, 386
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	281, 289
HapII	CCGG	3 cut(s)	198, 278, 286
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	498
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	2 cut(s)	306, 539
HinfI	GANTC	3 cut(s)	204, 473, 527
HpaII	CCGG	3 cut(s)	198, 278, 286
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	2 cut(s)	186, 264
Hpy188III	TCNNGA	1 cut(s)	599
HpyAV	CCTTC	3 cut(s)	30, 322, 386
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	53, 68, 173, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	498
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	100, 123, 264, 499
LpnPI	CCDG	5 cut(s)	211, 276, 291, 299, 303
Lsp1109I	GCAGC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	140, 386
MaeII	ACGT	1 cut(s)	270
MalI	GATC	4 cut(s)	102, 125, 266, 501
MboI	GATC	4 cut(s)	100, 123, 264, 499
MboII	GAAGA	2 cut(s)	151, 499
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	3 cut(s)	174, 244, 258
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	482, 521
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	8 cut(s)	21, 24, 27, 39, 389, 448, 460, 598
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	73
MspI	CCGG	3 cut(s)	198, 278, 286
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	179
NarI	GGCGCC	1 cut(s)	195
NdeII	GATC	4 cut(s)	100, 123, 264, 499
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	498
PciI	ACATGT	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	481, 521
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	2 cut(s)	481, 521
Ppu21I	YACGTR	1 cut(s)	271
PscI	ACATGT	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	100, 123, 264, 499
SchI	GAGTC	2 cut(s)	482, 521
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	8 cut(s)	58, 73, 145, 273, 310, 333, 543, 590
SfoI	GGCGCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	3 cut(s)	174, 244, 258
SspDI	GGCGCC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	140, 386
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	273
TasI	AATT	3 cut(s)	174, 244, 258
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	443
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	533
TspRI	CASTG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	498
XspI	CTAG	2 cut(s)	140, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.