Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011138

Physical Location & Seq

Genomic Coordinates Reverse (-)

19760001 .. 19761496

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAGTGGTTTACAAGCACAAGACAGTGCGTGTTCTTTGGACAAGCCAAGCAAAGATGTAGTTGCCACAGAGACAAAACCAAAGAAGAGGATATGTTGTGCTTGTCCTGATACAAAGAAACTTAGAGATGAATGCATTGTAGAACACGGTGAATCCGCTTGCACGAAATGGATCGAAGCTCATATTTTGTGTCTTCGATCAGAGGGTTTCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0006873 GO:0006875 GO:0006878 GO:0006996 GO:0007005 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0008535 GO:0009605 GO:0009607 GO:0009617 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010155 GO:0015680 GO:0016043 GO:0016530 GO:0016531 GO:0017004 GO:0019222 GO:0019725 GO:0022607 GO:0022898 GO:0030001 GO:0030003 GO:0030234 GO:0031323 GO:0031325 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032879 GO:0033108 GO:0033617 GO:0034622 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0042127 GO:0042221 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043270 GO:0043467 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046688 GO:0046872 GO:0046907 GO:0046914 GO:0046916 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051234 GO:0051341 GO:0051353 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0098771 GO:0098772 GO:0140104 GO:1903136 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko03460 ko04150 ko04714 map00190 map01100 map03460 map04150 map04714

Pfam Domains

Protein Families

COX17

Protein Analysis

72

Amino Acids

7.94

Weight (kDa)

7.56

Isoelectric Point (pI)

84.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX17	PF05051	28 - 72	5.6e-20	Cytochrome C oxidase copper chaperone (COX17)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53030 AT3G15352 AT3G15352 AT3G15352 AT3G15352
fragaria_vesca	FvH4_3g19981 FvH4_3g19981
malus_domestica	MD03G1227400.v1.1 MD03G1227600.v1.1 MD11G1246900.v1.1
prunus_persica	Prupe.4G181400_v2.0.a1 Prupe.4G181400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033731
rosa_multiflora	Rmu_sc0004596.1_g000030
rosa_roxburghii	Rroxscaffold_1G00046410
rosa_rugosa	Rorug05G0141600 Rorug05G0141700
rosa_samantha	Rh5BG233300 Rh5DG240100
rosa_wichuraiana	Rw5G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	171, 197
BspACI	CCGC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	179
BssMI	GATC	2 cut(s)	171, 197
Bst4CI	ACNGT	2 cut(s)	26, 149
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	122
BstKTI	GATC	2 cut(s)	174, 200
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	171, 197
BstV2I	GAAGAC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	160
CviJI	RGCY	2 cut(s)	46, 179
CviKI_1	RGCY	2 cut(s)	46, 179
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	173, 199
DpnII	GATC	2 cut(s)	171, 197
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	137
FaiI	YATR	2 cut(s)	94, 183
HinfI	GANTC	1 cut(s)	152
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	11
HpyCH4III	ACNGT	2 cut(s)	26, 149
HpyCH4V	TGCA	2 cut(s)	135, 162
HpyF3I	CTNAG	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	171, 197
LpnPI	CCDG	1 cut(s)	120
MalI	GATC	2 cut(s)	173, 199
MboI	GATC	2 cut(s)	171, 197
MboII	GAAGA	2 cut(s)	97, 185
MnlI	CCTC	2 cut(s)	81, 196
Mph1103I	ATGCAT	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	171, 197
NsiI	ATGCAT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	171, 197
SetI	ASST	1 cut(s)	181
SsiI	CCGC	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	26, 149
TaqI	TCGA	2 cut(s)	174, 196
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.