Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011138

Physical Location & Seq

Genomic Coordinates Reverse (-)

12934976 .. 12940703

Gene Structure 5728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0141600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3801 bp

ATGTCAGGGTCATCTGGAAGAAGAAAGAGGAAGATAAGATGGAGCAAGCTGTATTCCTATGGATGCTTCAGACCACCCCACACTCTTGATTCTGATCCTGGCCAACAGCTACTGGGTCAACCAGGGTTTTCACGGGTTGTTTTCTGCAATGAACCTCAGCTGCACAAGGCTAAGCCTTACAAGTACCCCAATAACTATGTATCCACAACCAAGTACAACATTGTCACTTTTCTTCCCAAAGCTCTTTTCGAGCAGTTTCGCAGAGTTGCCAATCTTTATTTTCTTCTAGCAGCAGTTTTGTCTCTCAATTCTTTCGCTCCCTTTAATCCAATAAGTTTGATTGCTCCTTTGGTGTTTGTTGTGGGAGTTAGCATGATTAAAGAGGCTGTCGAAGATTGGCACCGATTCTTGCAGGATTTGAATGTGAATTCAAGAACTGTAAGAGCTCATGTTGGAGGTGGCTTATTTGTTGAAAAGACATGGCAAGGGCTTTGTGTTGGAGATGTTGTTAAAGTTAACAAGAATGAATATTTTCCAAGTGATCTTCTCTTGCTATCTTCTAGCTTTGAGGATGGTATATGTTATGTCGAGACCATGAACCTCGATGGAGAAACTAATCTGAAAGTTAAGAGAAGCTCAGAAGCCACACTTGACTTGGCAAATGATCAAGCATTTAGTGAATTCAAGGCCACAATTCGCTGTGAGGATCCAAATCCTCATCTTTACACCTTTGTTGGGAATTTAGAGTTGAACAGTGTAACACATCCCTTGTGCCCTGCCACACTGCTTCTAAGAGATTCGAAACTTAGAAATACTGATTACATTTATGGGGTTGTGATCTTTAGTGGACCTGACACAAAAGCAGTGAGGAACTCAACAAGATCACCATCCAAGCGTAGTCGGATTGAAAGAAAGATGGACCTTGTCATTTACCTTCTCTTTTCAATGCTTCTTCTTATTTCGCTCATCACTTCGACTGGTTTCGCGGTGTTACTGAAATCACAAATGGTCAAATGGTGGTACCTTTTTCTGCAAGATGATGATCCACTGTTCAAACCTGATCCACTCTTCAAACCATCAGCTCCTGAAGTATCTGGTTTCCTACAATTTGTAAGGGCCCTTATTTTGTATGGCTACTTGATCCCCATTTCTCTCTATGTCTCTATAGAGGTTGTCAAAGTTTTGCAAGCCATGCTCATTAACAAGGATATAGAGTTGTATGATGAAGTTACATGCAAGTCAGTTCAAACCAGAACATCCAACTTGAATGAAGAACTTGGTCAAGTAGAGATGATTCTGACGGATAAAACGGGGACTTTGACGTGTAATCAGATGGAATTTAGGAAATGCTCTATTGCTGGAGCTTCATATGGGGGTAACATTAATAATATCGATCGTGCAGCATCTAAAAGGATGAATGTTGAGGTTGAGTCGTATCGTTTTAGTATGGATGAATTTGAAACACAATGCCAAAGCTTTGAAATGTTTGACTTTTCAGTGGCGGATGTTAGCACTGAAAAAGCTGCTCTTGCTGGACAGAAGCACATGCAGAACTCGAGTGCAGACTGTTCCAGAATCTCTAGTGCGGAGGGAGAACCTGCCATCAAAGGTTTCAACTTTAGGGATGATAGGCTTATGAACAGAAAGTGGGTTTATAGGTCCAACTTATTTGATGTAACAATGTTCTTTAGAGTCATGGCTCTATGTCACACAGGCATACCTGTTGATGGTGATCAGGCTCATAAGATAAAGTATGAGGCAGAGTCACCAGAAGAAGTATCTTTTCTAATTGCTGCACAAGAGTTTGGATTTCAATTTTTTCAAAGAAGTCAGTCCGTCATGTATCTCAAGGAGTTTGATCCGTCCTCTGGAAAGGTGGTTGAGAGGAAGTACAAACTTTTAAACCTTCTAGAATTCTGTAGTGCTCGAAAGAGGATGTCAGTTATTGTAAGCAATGAAGATGGTGAAATCTTTCTTCTCTGCAAAGGGGCAGATAACATTATCTTTGATAGACTTGCAGACAATGGTAGGTCTTACCAACAGGCTACAACTCTACACCTTTCAGATTATGCAGAAGATGGATTTCGAACTCTAGCATTTGCTTATCGAAAACTTGATGCTGTCGAGTATGAAAAATGGAACTCAATATTTACCGAGGCTAAGACCACAATAGGTCCTGAAAGAGAAGAAGTACTAATAGAAGCATCTGAAATGATTGAAAAGGATTTAATTCTATTAGGGGTTGCTGCTGTTGAAGACAAGTTACAAAAAGGGGTTCCAGAATGCATAGATAAACTTGCACAAGCAGGAATGAAAATATGGCTGCTTACTGGTGACAAGAAAGAAACTGCAATAAATATTGGATTTTCTTGCAGCTTACTTCGGGAGGATATGAAACAGTTTCATCTAATTTTGGGCAAAGAAAGTGCATCTAGTAACCGACTGAAGATGAAGGAAGACATTTTAAACCAACTTGAAGGCTTTCAGAAAGTGAAGTCTGAAGAAAGCAACAAAGATGCACCCTTGGCTTTGATAGTAGATGGAAAAGCTCTTGAAATTGCTCTGAGAAGTGATGTGAAGGACCAGTTCTTACCGTTGGCCGTTGATTGTGCTTCTGTTATATGCTGCAGGGTGTCTCCAAAACAAAAGGCTCTGATTACTCGATTGGTAAAGGAACATACAGGCAAGACAACCTTGGCTATTGGAGATGGGGCAAATGATGTTGGCATGATTCAAGAAGCTGATATTGGAGTAGGAATCAGTGGCATGGAAGGAATGCAGGCAGTCATGGCCAGTGACATCTCATTGCCTCAATTCCGATTTTTGGGGAGATTACTTATTGTTCATGGGCACTGGTGTTACAAGAGGATTTCGAAAATGATTCTCTACTTCGTGTACAAAAACATTGCATTTGGCCTCACACTGTTCTACTATGAAGTATACACAAGTTTCTCAGGGGAGGTCTTATATGATGACTGGTATATGGCACTATTCAATGTAATTTTGACATCTTTGCCTGTTATATCATTGGGAGTCCTTGAGCAAGATGTTTCATCCGAAGTGTGCCTCAAGTTTCCGGCTCTCTACCAACAGGGCCAAAAGAACATATACTTCACTTGGAGCCGGATCATCGGTTGGATACTCAACGGCATTGTAGCATCTCTAGTCATCTTCCTTGCAAACATATGCACACTTTCTACCTTCAACAAAGATGGTAGTTTTGCAGAGAAAGCCTTCGCCAAAGATGGTAATGTTGCAGACATCACACACCTCGGTGCCATGACATACACATGCATAATCTGGACAGTCAATTGCCAGATATCCCTCATCATCACCCACTTCACTTGGATCCAACATCTCTTCATATGGGGCAGCATCATCATCTGGTACATCTTCCTGTTCATCTACGGTGCTCTACCTCCTGACATTTCGAAAAGAGGCTTTCGTGTTCTTGCAGAAGCTCTTGGCCCTGCACCCATTTACTGGCTTGTCACATTGCTAGTTGTGGTTGTTGCTCTTCTTCCTTATTTCATCCACATTGCGATCCAACGGTCGTTTTATCCTTTGGATGACCATGTGATTCAAGAAATGAAGTATTGCAGGAAAGATATTGCGAAAAATAATCTAATTTGGGAGAGGGAACAGAACAACTCAGTGATGATGACCCAGATAGGATTTTCGGCTAGAGTCGATGCAAGGATTCGGATTATGAAGGAAAACTTGAACCAGAAGGGACAGTTGATATATAGATCAGTAACAAGCAGTCCAATATTTAGGTCACTGACAAGCAGTCCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0006996 GO:0007005 GO:0008150 GO:0008535 GO:0009987 GO:0016043 GO:0016530 GO:0016531 GO:0017004 GO:0022607 GO:0030001 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0065003 GO:0070013 GO:0071840 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

COX17

Protein Analysis

1266

Amino Acids

143.38

Weight (kDa)

7.01

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	47 - 113	1.9e-22	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	561 - 757	1e-16	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	929 - 1188	1.9e-85	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53030 AT3G15352 AT3G15352 AT3G15352 AT3G15352
fragaria_vesca	FvH4_3g19981 FvH4_3g19981
malus_domestica	MD03G1227400.v1.1 MD03G1227600.v1.1 MD11G1246900.v1.1
prunus_persica	Prupe.4G181400_v2.0.a1 Prupe.4G181400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033731
rosa_multiflora	Rmu_sc0004596.1_g000030
rosa_roxburghii	Rroxscaffold_1G00046410
rosa_rugosa	Rorug05G0141600 Rorug05G0141700
rosa_samantha	Rh5BG233300 Rh5DG240100
rosa_wichuraiana	Rw5G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1606
Acc65I	GGTACC	1 cut(s)	1020
AccB1I	GGYRCC	3 cut(s)	399, 1020, 3275
AccB7I	CCANNNNNTGG	1 cut(s)	3483
AccI	GTMKAC	1 cut(s)	2940
AccII	CGCG	1 cut(s)	986
AciI	CCGC	3 cut(s)	986, 1502, 1586
AcoI	YGGCCR	3 cut(s)	100, 2598, 2790
AcsI	RAATTY	6 cut(s)	427, 680, 739, 1337, 1454, 1913
AcuI	CTGAAG	4 cut(s)	52, 1107, 2465, 2520
AfaI	GTAC	7 cut(s)	185, 215, 1022, 1892, 2193, 2897, 3389
AfiI	CCNNNNNNNGG	5 cut(s)	735, 1727, 1868, 2824, 3483
AflIII	ACRYGT	1 cut(s)	1322
AhdI	GACNNNNNGTC	1 cut(s)	3789
AjiI	CACGTC	1 cut(s)	1323
AjnI	CCWGG	2 cut(s)	97, 121
AjuI	GAANNNNNNNTTGG	4 cut(s)	230, 262, 2730, 2762
AleI	CACNNNNGTG	1 cut(s)	3273
Alw21I	GWGCWC	3 cut(s)	448, 1927, 3415
Alw26I	GTCTC	4 cut(s)	306, 584, 1165, 2640
AlwNI	CAGNNNCTG	2 cut(s)	112, 1085
Ama87I	CYCGRG	1 cut(s)	1555
AoxI	GGCC	8 cut(s)	100, 687, 1116, 2598, 2790, 2914, 3094, 3466
ApaI	GGGCCC	1 cut(s)	1120
ApoI	RAATTY	6 cut(s)	427, 680, 739, 1337, 1454, 1913
AseI	ATTAAT	1 cut(s)	1383
Asp700I	GAANNNNTTC	4 cut(s)	531, 1971, 2481, 3233
Asp718I	GGTACC	1 cut(s)	1020
AspS9I	GGNCC	9 cut(s)	848, 919, 1116, 1117, 1659, 2174, 2581, 3094, 3467
AsuHPI	GGTGA	6 cut(s)	876, 1742, 1758, 1976, 2345, 3325
AsuII	TTCGAA	4 cut(s)	800, 2086, 2873, 3431
AvaI	CYCGRG	1 cut(s)	1555
AvaII	GGWCC	5 cut(s)	848, 919, 1659, 2174, 2581
BaeGI	GKGCMC	3 cut(s)	776, 1120, 2853
BalI	TGGCCA	2 cut(s)	102, 2792
BamHI	GGATCC	2 cut(s)	706, 3348
BanI	GGYRCC	3 cut(s)	399, 1020, 3275
BanII	GRGCYC	2 cut(s)	448, 1120
BarI	GAAGNNNNNNTAC	2 cut(s)	2247, 2279
BbsI	GAAGAC	2 cut(s)	2262, 2463
Bbv12I	GWGCWC	3 cut(s)	448, 1927, 3415
BbvCI	CCTCAGC	1 cut(s)	156
BceAI	ACGGC	2 cut(s)	2585, 3163
BciT130I	CCWGG	2 cut(s)	99, 123
BciVI	GTATCC	2 cut(s)	211, 3132
BclI	TGATCA	2 cut(s)	664, 1732
BcoDI	GTCTC	4 cut(s)	306, 584, 1165, 2640
BfaI	CTAG	9 cut(s)	287, 561, 1581, 1910, 2093, 2433, 3164, 3500, 3684
BfmI	CTRYAG	3 cut(s)	1164, 1918, 2626
BfuAI	ACCTGC	1 cut(s)	1606
BfuI	GTATCC	2 cut(s)	211, 3132
BlpI	GCTNAGC	1 cut(s)	171
BmcAI	AGTACT	1 cut(s)	2193
Bme1390I	CCNGG	2 cut(s)	99, 123
Bme18I	GGWCC	5 cut(s)	848, 919, 1659, 2174, 2581
BmeRI	GACNNNNNGTC	1 cut(s)	3789
BmeT110I	CYCGRG	1 cut(s)	1555
BmgBI	CACGTC	1 cut(s)	1323
BmgT120I	GGNCC	9 cut(s)	848, 919, 1116, 1117, 1659, 2174, 2581, 3094, 3467
BmiI	GGNNCC	8 cut(s)	401, 708, 1022, 1118, 2277, 3122, 3277, 3350
BmrFI	CCNGG	2 cut(s)	99, 123
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	9 cut(s)	53, 1412, 2107, 2213, 2438, 2506, 3167, 3384, 3682
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	2 cut(s)	2262, 2463
BpmI	CTGGAG	1 cut(s)	1380
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	4 cut(s)	800, 2086, 2873, 3431
BpuEI	CTTGAG	3 cut(s)	1832, 3053, 3059
Bsa29I	ATCGAT	1 cut(s)	1392
BsaBI	GATNNNNATC	5 cut(s)	93, 711, 886, 1041, 1731
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	122, 2154, 2523, 2694, 3271
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	5 cut(s)	735, 1727, 1868, 2824, 3483
Bse1I	ACTGG	8 cut(s)	117, 982, 2335, 2584, 2793, 2858, 2981, 3488
Bse3DI	GCAATG	6 cut(s)	154, 1960, 2804, 2904, 3494, 3537
Bse8I	GATNNNNATC	5 cut(s)	93, 711, 886, 1041, 1731
BseBI	CCWGG	2 cut(s)	99, 123
BseCI	ATCGAT	1 cut(s)	1392
BseDI	CCNNGG	5 cut(s)	122, 2154, 2523, 2694, 3271
BseJI	GATNNNNATC	5 cut(s)	93, 711, 886, 1041, 1731
BseLI	CCNNNNNNNGG	5 cut(s)	735, 1727, 1868, 2824, 3483
BseMI	GCAATG	6 cut(s)	154, 1960, 2804, 2904, 3494, 3537
BseMII	CTCAG	5 cut(s)	170, 651, 2555, 2967, 3666
BseNI	ACTGG	8 cut(s)	117, 982, 2335, 2584, 2793, 2858, 2981, 3488
BseSI	GKGCMC	3 cut(s)	776, 1120, 2853
BsgI	GTGCAG	5 cut(s)	146, 1419, 1581, 1779, 3456
Bsh1236I	CGCG	1 cut(s)	986
Bsh1285I	CGRYCG	2 cut(s)	1396, 3554
BshFI	GGCC	8 cut(s)	102, 689, 1118, 2600, 2792, 2916, 3096, 3468
BshNI	GGYRCC	3 cut(s)	399, 1020, 3275
BshVI	ATCGAT	1 cut(s)	1392
BsiEI	CGRYCG	2 cut(s)	1396, 3554
BsiHKAI	GWGCWC	3 cut(s)	448, 1927, 3415
BsiHKCI	CYCGRG	1 cut(s)	1555
BsiSI	CCGG	2 cut(s)	3077, 3124
BslFI	GGGAC	2 cut(s)	1327, 3747
BslI	CCNNNNNNNGG	5 cut(s)	735, 1727, 1868, 2824, 3483
BsmAI	GTCTC	4 cut(s)	306, 584, 1165, 2640
BsmFI	GGGAC	2 cut(s)	1327, 3747
BsmI	GAATGC	2 cut(s)	2288, 2781
BsnI	GGCC	8 cut(s)	102, 689, 1118, 2600, 2792, 2916, 3096, 3468
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	1555
Bsp119I	TTCGAA	4 cut(s)	800, 2086, 2873, 3431
Bsp120I	GGGCCC	1 cut(s)	1116
Bsp1286I	GDGCHC	6 cut(s)	448, 776, 1120, 1927, 2853, 3415
Bsp1407I	TGTACA	1 cut(s)	2895
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	986, 1502, 1586
BspANI	GGCC	8 cut(s)	102, 689, 1118, 2600, 2792, 2916, 3096, 3468
BspCNI	CTCAG	5 cut(s)	169, 650, 2556, 2966, 3665
BspDI	ATCGAT	1 cut(s)	1392
BspFNI	CGCG	1 cut(s)	986
BspLI	GGNNCC	8 cut(s)	401, 708, 1022, 1118, 2277, 3122, 3277, 3350
BspMAI	CTGCAG	1 cut(s)	2630
BspMI	ACCTGC	1 cut(s)	1606
BspQI	GCTCTTC	1 cut(s)	3522
BspT104I	TTCGAA	4 cut(s)	800, 2086, 2873, 3431
BspT107I	GGYRCC	3 cut(s)	399, 1020, 3275
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	6 cut(s)	154, 1960, 2804, 2904, 3494, 3537
BsrGI	TGTACA	1 cut(s)	2895
BsrI	ACTGG	8 cut(s)	117, 982, 2335, 2584, 2793, 2858, 2981, 3488
BssECI	CCNNGG	5 cut(s)	122, 2154, 2523, 2694, 3271
BssNAI	GTATAC	1 cut(s)	2941
BssT1I	CCWWGG	2 cut(s)	2523, 2694
Bst1107I	GTATAC	1 cut(s)	2941
Bst2UI	CCWGG	2 cut(s)	99, 123
Bst6I	CTCTTC	3 cut(s)	1073, 3365, 3522
BstAPI	GCANNNNNTGC	1 cut(s)	1192
BstAUI	TGTACA	1 cut(s)	2895
BstBI	TTCGAA	4 cut(s)	800, 2086, 2873, 3431
BstC8I	GCNNGC	3 cut(s)	47, 1188, 2781
BstDEI	CTNAG	9 cut(s)	156, 171, 637, 791, 806, 2160, 2564, 2953, 3652
BstFNI	CGCG	1 cut(s)	986
BstMAI	GTCTC	4 cut(s)	306, 584, 1165, 2640
BstMCI	CGRYCG	2 cut(s)	1396, 3554
BstMWI	GCNNNNNNNGC	5 cut(s)	1192, 1529, 2525, 2789, 3230
BstNI	CCWGG	2 cut(s)	99, 123
BstNSI	RCATGY	3 cut(s)	1236, 1549, 3294
BstSCI	CCNGG	2 cut(s)	97, 121
BstSFI	CTRYAG	3 cut(s)	1164, 1918, 2626
BstSLI	GKGCMC	3 cut(s)	776, 1120, 2853
BstUI	CGCG	1 cut(s)	986
BstV2I	GAAGAC	2 cut(s)	2262, 2463
BstX2I	RGATCY	2 cut(s)	706, 3348
BstYI	RGATCY	2 cut(s)	706, 3348
BstZ17I	GTATAC	1 cut(s)	2941
Bsu15I	ATCGAT	1 cut(s)	1392
BsuI	GTATCC	2 cut(s)	211, 3132
BsuRI	GGCC	8 cut(s)	102, 689, 1118, 2600, 2792, 2916, 3096, 3468
BsuTUI	ATCGAT	1 cut(s)	1392
BtrI	CACGTC	1 cut(s)	1323
BtsI	GCAGTG	2 cut(s)	782, 870
BveI	ACCTGC	1 cut(s)	1606
Cac8I	GCNNGC	3 cut(s)	47, 1188, 2781
CaiI	CAGNNNCTG	2 cut(s)	112, 1085
Cfr13I	GGNCC	9 cut(s)	848, 919, 1116, 1117, 1659, 2174, 2581, 3094, 3467
ClaI	ATCGAT	1 cut(s)	1392
Csp6I	GTAC	7 cut(s)	184, 214, 1021, 1891, 2192, 2896, 3388
CspCI	CAANNNNNGTGG	2 cut(s)	3326, 3361
CviQI	GTAC	7 cut(s)	184, 214, 1021, 1891, 2192, 2896, 3388
DdeI	CTNAG	9 cut(s)	156, 171, 637, 791, 806, 2160, 2564, 2953, 3652
DraI	TTTAAA	2 cut(s)	1902, 2466
DriI	GACNNNNNGTC	1 cut(s)	3789
EaeI	YGGCCR	3 cut(s)	100, 2598, 2790
Eam1104I	CTCTTC	3 cut(s)	1073, 3365, 3522
Eam1105I	GACNNNNNGTC	1 cut(s)	3789
EarI	CTCTTC	3 cut(s)	1073, 3365, 3522
EciI	GGCGGA	1 cut(s)	1517
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	2523, 2694
Eco24I	GRGCYC	2 cut(s)	448, 1120
Eco31I	GGTCTC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	3321
Eco47I	GGWCC	5 cut(s)	848, 919, 1659, 2174, 2581
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	4 cut(s)	52, 1107, 2465, 2520
Eco88I	CYCGRG	1 cut(s)	1555
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	3 cut(s)	1116, 1117, 2174
EcoRI	GAATTC	3 cut(s)	427, 680, 1913
EcoRII	CCWGG	2 cut(s)	97, 121
EcoRV	GATATC	1 cut(s)	3321
EcoT14I	CCWWGG	2 cut(s)	2523, 2694
EcoT22I	ATGCAT	2 cut(s)	2288, 3296
EcoT38I	GRGCYC	2 cut(s)	448, 1120
ErhI	CCWWGG	2 cut(s)	2523, 2694
FalI	AAGNNNNNCTT	8 cut(s)	633, 665, 1512, 1544, 2678, 2710, 3704, 3736
FaqI	GGGAC	2 cut(s)	1327, 3747
FauNDI	CATATG	3 cut(s)	1369, 3185, 3365
FbaI	TGATCA	2 cut(s)	664, 1732
FblI	GTMKAC	1 cut(s)	2940
FriOI	GRGCYC	2 cut(s)	448, 1120
FspBI	CTAG	9 cut(s)	287, 561, 1581, 1910, 2093, 2433, 3164, 3500, 3684
GsuI	CTGGAG	1 cut(s)	1380
HaeIII	GGCC	8 cut(s)	102, 689, 1118, 2600, 2792, 2916, 3096, 3468
HapII	CCGG	2 cut(s)	3077, 3124
HincII	GTYRAC	2 cut(s)	119, 517
HindII	GTYRAC	2 cut(s)	119, 517
HindIII	AAGCTT	1 cut(s)	1474
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	2 cut(s)	3077, 3124
HphI	GGTGA	6 cut(s)	876, 1742, 1758, 1976, 2345, 3325
Hpy166II	GTNNAC	5 cut(s)	119, 517, 848, 2896, 2941
Hpy8I	GTNNAC	5 cut(s)	119, 517, 848, 2896, 2941
HpyCH4IV	ACGT	1 cut(s)	1322
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1192, 1529, 2525, 2789, 3230
HpyF3I	CTNAG	9 cut(s)	156, 171, 637, 791, 806, 2160, 2564, 2953, 3652
HpySE526I	ACGT	1 cut(s)	1322
KpnI	GGTACC	1 cut(s)	1024
Ksp22I	TGATCA	2 cut(s)	664, 1732
KspAI	GTTAAC	1 cut(s)	517
LguI	GCTCTTC	1 cut(s)	3522
LmnI	GCTCC	6 cut(s)	42, 322, 349, 1087, 1361, 3120
LweI	GCATC	9 cut(s)	53, 1412, 2107, 2213, 2438, 2506, 3167, 3384, 3682
MaeI	CTAG	9 cut(s)	287, 561, 1581, 1910, 2093, 2433, 3164, 3500, 3684
MaeII	ACGT	1 cut(s)	1322
MfeI	CAATTG	1 cut(s)	3310
MflI	RGATCY	2 cut(s)	706, 3348
MhlI	GDGCHC	6 cut(s)	448, 776, 1120, 1927, 2853, 3415
MlsI	TGGCCA	2 cut(s)	102, 2792
MluNI	TGGCCA	2 cut(s)	102, 2792
MlyI	GAGTC	5 cut(s)	1439, 1701, 1772, 3042, 3696
MmeI	TCCRAC	8 cut(s)	433, 478, 881, 1284, 1686, 3116, 3376, 3571
Mox20I	TGGCCA	2 cut(s)	102, 2792
Mph1103I	ATGCAT	2 cut(s)	2288, 3296
MroXI	GAANNNNTTC	4 cut(s)	531, 1971, 2481, 3233
MscI	TGGCCA	2 cut(s)	102, 2792
MslI	CAYNNNNRTG	2 cut(s)	3273, 3289
Msp20I	TGGCCA	2 cut(s)	102, 2792
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	2 cut(s)	3077, 3124
MspR9I	CCNGG	2 cut(s)	99, 123
MunI	CAATTG	1 cut(s)	3310
Mva1269I	GAATGC	2 cut(s)	2288, 2781
MvaI	CCWGG	2 cut(s)	99, 123
MvnI	CGCG	1 cut(s)	986
MwoI	GCNNNNNNNGC	5 cut(s)	1192, 1529, 2525, 2789, 3230
NdeI	CATATG	3 cut(s)	1369, 3185, 3365
NlaIV	GGNNCC	8 cut(s)	401, 708, 1022, 1118, 2277, 3122, 3277, 3350
NmuCI	GTSAC	7 cut(s)	223, 1706, 1764, 2333, 2795, 3490, 3777
NsiI	ATGCAT	2 cut(s)	2288, 3296
NspI	RCATGY	3 cut(s)	1236, 1549, 3294
NspV	TTCGAA	4 cut(s)	800, 2086, 2873, 3431
OliI	CACNNNNGTG	1 cut(s)	3273
PaeR7I	CTCGAG	1 cut(s)	1555
PciSI	GCTCTTC	1 cut(s)	3522
PctI	GAATGC	2 cut(s)	2288, 2781
PdmI	GAANNNNTTC	4 cut(s)	531, 1971, 2481, 3233
PflFI	GACNNNGTC	1 cut(s)	923
PflMI	CCANNNNNTGG	1 cut(s)	3483
Ple19I	CGATCG	1 cut(s)	1396
PleI	GAGTC	5 cut(s)	1438, 1700, 1771, 3041, 3695
PpsI	GAGTC	5 cut(s)	1438, 1700, 1771, 3041, 3695
PpuMI	RGGWCCY	1 cut(s)	2174
PshBI	ATTAAT	1 cut(s)	1383
Psp124BI	GAGCTC	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	2174
Psp6I	CCWGG	2 cut(s)	97, 121
PspGI	CCWGG	2 cut(s)	97, 121
PspN4I	GGNNCC	8 cut(s)	401, 708, 1022, 1118, 2277, 3122, 3277, 3350
PspOMI	GGGCCC	1 cut(s)	1116
PspPI	GGNCC	9 cut(s)	848, 919, 1116, 1117, 1659, 2174, 2581, 3094, 3467
PspPPI	RGGWCCY	1 cut(s)	2174
PspXI	VCTCGAGB	1 cut(s)	1555
PstI	CTGCAG	1 cut(s)	2630
PstNI	CAGNNNCTG	2 cut(s)	112, 1085
PsuI	RGATCY	2 cut(s)	706, 3348
PsyI	GACNNNGTC	1 cut(s)	923
PvuI	CGATCG	1 cut(s)	1396
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	7 cut(s)	185, 215, 1022, 1892, 2193, 2897, 3389
RsaNI	GTAC	7 cut(s)	184, 214, 1021, 1891, 2192, 2896, 3388
RseI	CAYNNNNRTG	2 cut(s)	3273, 3289
SacI	GAGCTC	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	3522
Sau96I	GGNCC	9 cut(s)	848, 919, 1116, 1117, 1659, 2174, 2581, 3094, 3467
ScaI	AGTACT	1 cut(s)	2193
SchI	GAGTC	5 cut(s)	1439, 1701, 1772, 3042, 3696
ScrFI	CCNGG	2 cut(s)	99, 123
SduI	GDGCHC	6 cut(s)	448, 776, 1120, 1927, 2853, 3415
SfaNI	GCATC	9 cut(s)	53, 1412, 2107, 2213, 2438, 2506, 3167, 3384, 3682
SfcI	CTRYAG	3 cut(s)	1164, 1918, 2626
Sfr274I	CTCGAG	1 cut(s)	1555
SfuI	TTCGAA	4 cut(s)	800, 2086, 2873, 3431
SinI	GGWCC	5 cut(s)	848, 919, 1659, 2174, 2581
SlaI	CTCGAG	1 cut(s)	1555
SmiMI	CAYNNNNRTG	2 cut(s)	3273, 3289
SmlI	CTYRAG	4 cut(s)	1555, 1847, 3038, 3068
SmoI	CTYRAG	4 cut(s)	1555, 1847, 3038, 3068
SsiI	CCGC	3 cut(s)	986, 1502, 1586
SspI	AATATT	4 cut(s)	530, 2148, 2359, 3771
SspMI	CTAG	9 cut(s)	287, 561, 1581, 1910, 2093, 2433, 3164, 3500, 3684
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	2 cut(s)	97, 121
StyI	CCWWGG	2 cut(s)	2523, 2694
TaiI	ACGT	1 cut(s)	1325
TatI	WGTACW	4 cut(s)	213, 1890, 2191, 2895
TseFI	GTSAC	7 cut(s)	223, 1706, 1764, 2333, 2795, 3490, 3777
Tsp45I	GTSAC	7 cut(s)	223, 1706, 1764, 2333, 2795, 3490, 3777
TspGWI	ACGGA	3 cut(s)	1316, 1825, 1851
Tth111I	GACNNNGTC	1 cut(s)	923
Van91I	CCANNNNNTGG	1 cut(s)	3483
VpaK11BI	GGWCC	5 cut(s)	848, 919, 1659, 2174, 2581
VspI	ATTAAT	1 cut(s)	1383
XapI	RAATTY	6 cut(s)	427, 680, 739, 1337, 1454, 1913
XbaI	TCTAGA	1 cut(s)	1909
XceI	RCATGY	3 cut(s)	1236, 1549, 3294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	1555
XmiI	GTMKAC	1 cut(s)	2940
XmnI	GAANNNNTTC	4 cut(s)	531, 1971, 2481, 3233
XspI	CTAG	9 cut(s)	287, 561, 1581, 1910, 2093, 2433, 3164, 3500, 3684
ZrmI	AGTACT	1 cut(s)	2193
Zsp2I	ATGCAT	2 cut(s)	2288, 3296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.