Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011138

Physical Location & Seq

Genomic Coordinates Forward (+)

10765095 .. 10766926

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G181400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGTGGAATGCCAACAGAAAATACTTCGTCTGCCTTGGCTTTCCCAGGGTCGCAGCCAACGCAAGGATCAGCAGTCACTACTGCACCTAGCCTGGATACAAAGCCGAAGAAGAAGATCTGCTGTGCTTGCCCGGATACTAAGAAGCTGCGCGATGAATGCATTGTGGAGCATGGTCAAGAGGCTTGCACAAAATGGATCGATGCTCATCTCAGGTGCCTTCGTGCAGAGGGCTTCAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0006996 GO:0007005 GO:0008150 GO:0008535 GO:0009987 GO:0016043 GO:0016530 GO:0016531 GO:0017004 GO:0022607 GO:0030001 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0065003 GO:0070013 GO:0071840 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

COX17

Protein Analysis

82

Amino Acids

8.68

Weight (kDa)

7.6

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53030 AT3G15352 AT3G15352 AT3G15352 AT3G15352
fragaria_vesca	FvH4_3g19981 FvH4_3g19981
malus_domestica	MD03G1227400.v1.1 MD03G1227600.v1.1 MD11G1246900.v1.1
prunus_persica	Prupe.4G181400_v2.0.a1 Prupe.4G181400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033731
rosa_multiflora	Rmu_sc0004596.1_g000030
rosa_roxburghii	Rroxscaffold_1G00046410
rosa_rugosa	Rorug05G0141600 Rorug05G0141700
rosa_samantha	Rh5BG233300 Rh5DG240100
rosa_wichuraiana	Rw5G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	2 cut(s)	76, 206
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	46, 93
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AlwI	GGATC	2 cut(s)	76, 206
ApeKI	GCWGC	2 cut(s)	55, 148
AspLEI	GCGC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	67, 135
BciT130I	CCWGG	2 cut(s)	48, 95
BciVI	GTATCC	2 cut(s)	91, 130
BcnI	CCSGG	1 cut(s)	134
BfaI	CTAG	1 cut(s)	90
BfuI	GTATCC	2 cut(s)	91, 130
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	2 cut(s)	56, 149
BlsI	GCNGC	2 cut(s)	57, 150
Bme1390I	CCNGG	3 cut(s)	48, 95, 134
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	3 cut(s)	48, 95, 134
BmsI	GCATC	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	36, 46, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	48, 95
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	36, 46, 47
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	67, 135
BsgI	GTGCAG	2 cut(s)	69, 246
Bsh1236I	CGCG	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmI	GAATGC	2 cut(s)	15, 164
Bsp143I	GATC	3 cut(s)	68, 117, 198
BspCNI	CTCAG	1 cut(s)	225
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	76, 206
BspT107I	GGYRCC	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	36, 46, 47
BssMI	GATC	3 cut(s)	68, 117, 198
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	48, 95
BstC8I	GCNNGC	2 cut(s)	130, 187
BstDEI	CTNAG	2 cut(s)	141, 212
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	3 cut(s)	71, 120, 201
BstMBI	GATC	3 cut(s)	68, 117, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 129, 159
BstNI	CCWGG	2 cut(s)	48, 95
BstSCI	CCNGG	3 cut(s)	46, 93, 132
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	67, 135
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	201
BsuI	GTATCC	2 cut(s)	91, 130
BsuTUI	ATCGAT	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	130, 187
CfoI	GCGC	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	201
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	7 cut(s)	41, 58, 93, 106, 148, 185, 234
CviKI_1	RGCY	7 cut(s)	41, 58, 93, 106, 148, 185, 234
DdeI	CTNAG	2 cut(s)	141, 212
DpnI	GATC	3 cut(s)	70, 119, 200
DpnII	GATC	3 cut(s)	68, 117, 198
Eco130I	CCWWGG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	46, 93
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	176
FaiI	YATR	1 cut(s)	174
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	56, 149
Fsp4HI	GCNGC	2 cut(s)	56, 149
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	56, 149
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	230
HpyCH4V	TGCA	4 cut(s)	86, 162, 189, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 129, 159
HpyF3I	CTNAG	2 cut(s)	141, 212
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	68, 117, 198
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	33, 60, 80, 107, 147, 199
Lsp1109I	GCAGC	2 cut(s)	67, 135
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	70, 119, 200
MboI	GATC	3 cut(s)	68, 117, 198
MboII	GAAGA	3 cut(s)	121, 124, 127
MflI	RGATCY	1 cut(s)	117
MnlI	CCTC	2 cut(s)	175, 223
Mph1103I	ATGCAT	1 cut(s)	164
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	3 cut(s)	48, 95, 134
Mva1269I	GAATGC	2 cut(s)	15, 164
MvaI	CCWGG	2 cut(s)	48, 95
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	61, 129, 159
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	3 cut(s)	68, 117, 198
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	164
PasI	CCCWGGG	1 cut(s)	47
PctI	GAATGC	2 cut(s)	15, 164
PkrI	GCNGC	2 cut(s)	57, 150
Psp6I	CCWGG	2 cut(s)	46, 93
PspGI	CCWGG	2 cut(s)	46, 93
PspN4I	GGNNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	117
SatI	GCNGC	2 cut(s)	56, 149
Sau3AI	GATC	3 cut(s)	68, 117, 198
ScrFI	CCNGG	3 cut(s)	48, 95, 134
SetI	ASST	3 cut(s)	91, 150, 218
SfaNI	GCATC	1 cut(s)	193
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	46, 93, 132
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	55, 148
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	171
XspI	CTAG	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.