Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011138

Physical Location & Seq

Genomic Coordinates Forward (+)

27688107 .. 27689648

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG233300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGTGGACTGCCAACTGAAAATACTTCCTCTGCCTTGGCTCTGCCAGCCTTGCAGCCAAATCAAGGGTTGGCTGTCGCAAAGTCCGGCTTGGACACTAAGCCAAAGAAGAAGATCTGCTGTGCTTGCCCTGATACAAAGAAGCTGCGAGATGAATGCATTGTGCAGCATGGTGAAGATGCTTGCTCAAAATGGATTGAGGCTCATAAGACGTGCCTTCGTGCGGAGGGCTTCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0006996 GO:0007005 GO:0008150 GO:0008535 GO:0009987 GO:0016043 GO:0016530 GO:0016531 GO:0017004 GO:0022607 GO:0030001 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0065003 GO:0070013 GO:0071840 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

COX17

Protein Analysis

80

Amino Acids

8.55

Weight (kDa)

8.25

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX17	PF05051	36 - 80	5.9e-21	Cytochrome C oxidase copper chaperone (COX17)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53030 AT3G15352 AT3G15352 AT3G15352 AT3G15352
fragaria_vesca	FvH4_3g19981 FvH4_3g19981
malus_domestica	MD03G1227400.v1.1 MD03G1227600.v1.1 MD11G1246900.v1.1
prunus_persica	Prupe.4G181400_v2.0.a1 Prupe.4G181400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033731
rosa_multiflora	Rmu_sc0004596.1_g000030
rosa_roxburghii	Rroxscaffold_1G00046410
rosa_rugosa	Rorug05G0141600 Rorug05G0141700
rosa_samantha	Rh5BG233300 Rh5DG240100
rosa_wichuraiana	Rw5G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	65, 223
AgsI	TTSAA	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	213
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	55, 145, 166
AsuHPI	GGTGA	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	67, 132, 178
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	3 cut(s)	56, 146, 167
BlsI	GCNGC	3 cut(s)	57, 147, 168
BmgBI	CACGTC	1 cut(s)	213
BmsI	GCATC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 223
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	65, 223
BseXI	GCAGC	3 cut(s)	67, 132, 178
BsgI	GTGCAG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	65, 223
BsmI	GAATGC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	48, 127, 184
BstDEI	CTNAG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 52, 126
BstV1I	GCAGC	3 cut(s)	67, 132, 178
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	48, 127, 184
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	9 cut(s)	41, 50, 58, 74, 90, 103, 145, 203, 231
CviKI_1	RGCY	9 cut(s)	41, 50, 58, 74, 90, 103, 145, 203, 231
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	173
FaiI	YATR	2 cut(s)	171, 207
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	56, 146, 167
Fsp4HI	GCNGC	3 cut(s)	56, 146, 167
GluI	GCNGC	3 cut(s)	56, 146, 167
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	173
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	55, 159, 166
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 52, 126
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	3 cut(s)	60, 100, 144
Lsp1109I	GCAGC	3 cut(s)	67, 132, 178
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	3 cut(s)	121, 124, 188
MflI	RGATCY	1 cut(s)	114
MnlI	CCTC	3 cut(s)	40, 193, 220
Mph1103I	ATGCAT	1 cut(s)	161
MspI	CCGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	47, 52, 126
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	57, 147, 168
PsuI	RGATCY	1 cut(s)	114
SatI	GCNGC	3 cut(s)	56, 146, 167
Sau3AI	GATC	1 cut(s)	114
SetI	ASST	2 cut(s)	147, 215
SfaNI	GCATC	1 cut(s)	169
SsiI	CCGC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	215
TseI	GCWGC	3 cut(s)	55, 145, 166
TspDTI	ATGAA	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.