AT3G15352

copper chaperone activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011138
Physical Location & Seq
Forward (+)
5179358 .. 5180665
1308 bp
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UTR
Exon/CDS
Intron
AT3G15352.2

Sequence Viewer

Length: 225 bp
ATGACTGATCAGCCAGCACAAAATGGATTGATTCCTCCACCCACTTCAGAGCCAAGCAAGGCTGCTGCCTCAGCAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATACCAAGAAGCTGAGAGATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGATCGAGGCTCATAAAATTTGTCTCCGAGCAGAAGGTTTCAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000041 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005829 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0006873 GO:0006875 GO:0006878 GO:0006996 GO:0007005 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0008535 GO:0009605 GO:0009607 GO:0009617 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010155 GO:0015680 GO:0016043 GO:0016530 GO:0016531 GO:0017004 GO:0019222 GO:0019725 GO:0022607 GO:0022898 GO:0030001 GO:0030003 GO:0030234 GO:0031323 GO:0031325 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032879 GO:0033108 GO:0033617 GO:0034622 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0042127 GO:0042221 GO:0042592 GO:0043085 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043270 GO:0043467 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046688 GO:0046872 GO:0046907 GO:0046914 GO:0046916 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051179 GO:0051234 GO:0051341 GO:0051353 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0098771 GO:0098772 GO:0140104 GO:1903136 GO:1904062 GO:1904064 GO:1904732 GO:1904734 GO:1904959 GO:1904960
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03460 ko04150 ko04714 map00190 map01100 map03460 map04150 map04714
Pfam Domains
Protein Families
COX17

Protein Analysis

74

Amino Acids

8.05

Weight (kDa)

7.59

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX17 PF05051 31 - 75 4.5e-20 Cytochrome C oxidase copper chaperone (COX17)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 71, 203
AlwI GGATC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 62, 65
ApoI RAATTY 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 49, 52
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 71, 203
BisI GCNGC 2 cut(s) 63, 66
BlsI GCNGC 2 cut(s) 64, 67
Bpu10I CCTNAGC 1 cut(s) 70
BseMII CTCAG 2 cut(s) 84, 119
BseXI GCAGC 2 cut(s) 49, 52
BsmAI GTCTC 2 cut(s) 71, 203
BsmBI CGTCTC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 7, 177
BspCNI CTCAG 2 cut(s) 83, 120
BspPI GGATC 1 cut(s) 185
BssMI GATC 2 cut(s) 7, 177
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 15, 109, 166
BstDEI CTNAG 2 cut(s) 70, 128
BstKTI GATC 2 cut(s) 10, 180
BstMAI GTCTC 2 cut(s) 71, 203
BstMBI GATC 2 cut(s) 7, 177
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 49, 52
Cac8I GCNNGC 3 cut(s) 15, 109, 166
CviAII CATG 1 cut(s) 152
CviJI RGCY 6 cut(s) 13, 52, 62, 127, 164, 185
CviKI_1 RGCY 6 cut(s) 13, 52, 62, 127, 164, 185
DdeI CTNAG 2 cut(s) 70, 128
DpnI GATC 2 cut(s) 9, 179
DpnII GATC 2 cut(s) 7, 177
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 1 cut(s) 155
FaiI YATR 3 cut(s) 100, 153, 189
FatI CATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 63, 66
Fsp4HI GCNGC 2 cut(s) 63, 66
GluI GCNGC 2 cut(s) 63, 66
Hin1II CATG 1 cut(s) 155
HinfI GANTC 2 cut(s) 31, 158
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 49, 203, 224
HpyAV CCTTC 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 141, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 70, 128
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 177
LpnPI CCDG 2 cut(s) 27, 126
Lsp1109I GCAGC 2 cut(s) 49, 52
MaeII ACGT 1 cut(s) 219
MalI GATC 2 cut(s) 9, 179
MboI GATC 2 cut(s) 7, 177
MboII GAAGA 1 cut(s) 103
MluCI AATT 1 cut(s) 192
MnlI CCTC 4 cut(s) 45, 79, 87, 175
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 7, 177
NlaIII CATG 1 cut(s) 155
PfeI GAWTC 2 cut(s) 31, 158
PkrI GCNGC 2 cut(s) 64, 67
SatI GCNGC 2 cut(s) 63, 66
Sau3AI GATC 2 cut(s) 7, 177
SetI ASST 3 cut(s) 129, 214, 222
Sse9I AATT 1 cut(s) 192
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 147, 180
TasI AATT 1 cut(s) 192
TfiI GAWTC 2 cut(s) 31, 158
TseI GCWGC 2 cut(s) 62, 65
XapI RAATTY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.