Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011138

Physical Location & Seq

Genomic Coordinates Reverse (-)

31297149 .. 31298494

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1227400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGTGGACTGCCGGCAGAAAATACTTCCTCTGCCTTGGTTTTGCAAAGGTCACAGCCTAATCAAGGATCAGCAGTCACTACTCCTGCCCTGGACACAAAGCCGAAGAAGAAGATCTGCTGTGCTTGCCCGGATACTAAGAAGCTGCGAGATGAATGCATTGTAGAACATGGTCAAGATGCTTGCACAAAATGGATCGATGCTCATCTCAAGTGCCTTCGTGCAGAGGGCTTCAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0006996 GO:0007005 GO:0008150 GO:0008535 GO:0009987 GO:0016043 GO:0016530 GO:0016531 GO:0017004 GO:0022607 GO:0030001 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0065003 GO:0070013 GO:0071840 GO:0140104

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

COX17

Protein Analysis

81

Amino Acids

8.64

Weight (kDa)

8.26

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX17	PF05051	36 - 80	4.8e-20	Cytochrome C oxidase copper chaperone (COX17)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53030 AT3G15352 AT3G15352 AT3G15352 AT3G15352
fragaria_vesca	FvH4_3g19981 FvH4_3g19981
malus_domestica	MD03G1227400.v1.1 MD03G1227600.v1.1 MD11G1246900.v1.1
prunus_persica	Prupe.4G181400_v2.0.a1 Prupe.4G181400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033731
rosa_multiflora	Rmu_sc0004596.1_g000030
rosa_roxburghii	Rroxscaffold_1G00046410
rosa_rugosa	Rorug05G0141600 Rorug05G0141700
rosa_samantha	Rh5BG233300 Rh5DG240100
rosa_wichuraiana	Rw5G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	76, 203
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	2 cut(s)	76, 203
ApeKI	GCWGC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	92, 131
BmrFI	CCNGG	2 cut(s)	92, 131
BmsI	GCATC	2 cut(s)	169, 190
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	36, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	36, 90
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	14, 131
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	68, 114, 195
BspDI	ATCGAT	1 cut(s)	198
BspPI	GGATC	2 cut(s)	76, 203
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	36, 90
BssMI	GATC	3 cut(s)	68, 114, 195
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	15, 127, 184
BstDEI	CTNAG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	71, 117, 198
BstMBI	GATC	3 cut(s)	68, 114, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 129
BstV1I	GCAGC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	198
Cac8I	GCNNGC	3 cut(s)	15, 127, 184
Cfr10I	RCCGGY	1 cut(s)	13
ClaI	ATCGAT	1 cut(s)	198
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	4 cut(s)	58, 103, 145, 231
CviKI_1	RGCY	4 cut(s)	58, 103, 145, 231
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	70, 116, 197
DpnII	GATC	3 cut(s)	68, 114, 195
Eco130I	CCWWGG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	173
FaiI	YATR	1 cut(s)	171
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	146
HapII	CCGG	2 cut(s)	14, 131
Hin1II	CATG	1 cut(s)	173
HpaII	CCGG	2 cut(s)	14, 131
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	227
HpyCH4V	TGCA	4 cut(s)	46, 159, 186, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	68, 114, 195
LpnPI	CCDG	5 cut(s)	27, 77, 99, 104, 144
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	2 cut(s)	169, 190
MaeIII	GTNAC	2 cut(s)	51, 76
MalI	GATC	3 cut(s)	70, 116, 197
MboI	GATC	3 cut(s)	68, 114, 195
MboII	GAAGA	3 cut(s)	118, 121, 124
MflI	RGATCY	1 cut(s)	114
MnlI	CCTC	2 cut(s)	40, 220
Mph1103I	ATGCAT	1 cut(s)	161
MroNI	GCCGGC	1 cut(s)	13
MspI	CCGG	2 cut(s)	14, 131
MspR9I	CCNGG	2 cut(s)	92, 131
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	68, 114, 195
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	51, 76
NsiI	ATGCAT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	114
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	3 cut(s)	68, 114, 195
ScrFI	CCNGG	2 cut(s)	92, 131
SetI	ASST	2 cut(s)	53, 147
SfaNI	GCATC	2 cut(s)	169, 190
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	90, 129
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	51, 76
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	2 cut(s)	51, 76
TspDTI	ATGAA	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.