Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017140

Physical Location & Seq

Genomic Coordinates Reverse (-)

19794723 .. 19795544

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTCATTAAGATCCCTAATACTTTCATTAAAGCCACTTCACTTCTCTCATTGATCCTCTATTTCCTAATAATAGCAACATCTAAGTCTAACTCGGTTTTAGCCGATGAAGTTGTCGACCAAGAAGATGACCCGGAGTACTACATTCTCGACGAAACTCCCTCGATACTTTCAAACGTGACAATTTCATCCAAAACTAGGCTACTAGTTTCCCACTACAAGAAGATCAAGAAAGGAATGAGATGTCACGTCGAGAGTTACAACATTTGCAATGGCGTAAAAGCGAATAAAGGGACGAGCCTCTTGCATTGCTGCAAGAAGCATTGTCGGAATGTGCTAGGAGATAGGAACAATTGTGGTCGATGCGGTCACAAATGCGGTTTCGGGCAACGTTGTTGCGGTGGCGTTTGCACTTACGTTAACTTTAACCCTAACCATTGTGGGAAATGCACTAGGAAATGTGCGTCCGGGGTTAAATGCGAGTACGGGTATTGTGGGTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0006950 GO:0006952 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009863 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010193 GO:0010337 GO:0010565 GO:0010817 GO:0010941 GO:0010942 GO:0014070 GO:0019216 GO:0019217 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0042221 GO:0042304 GO:0042493 GO:0042742 GO:0043207 GO:0044421 GO:0046677 GO:0046885 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080140 GO:0080141 GO:0080142 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stig1

Protein Analysis

168

Amino Acids

18.61

Weight (kDa)

8.98

Isoelectric Point (pI)

27.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	80 - 168	3.8e-23	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53130
fragaria_vesca	FvH4_3g19820
malus_domestica	MD03G1228400.v1.1
prunus_persica	Prupe.4G180300_v2.0.a1 Prupe.4G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033251
rosa_laevigata	RLG00000033460
rosa_multiflora	Rmu_ssc0000299.1_g000017
rosa_roxburghii	Rroxscaffold_1G00046740
rosa_rugosa	Rorug05G0138100
rosa_samantha	Rh5AG229900 Rh5CG258800
rosa_wichuraiana	Rw5G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	3 cut(s)	366, 378, 399
AclI	AACGTT	1 cut(s)	391
AclWI	GGATC	2 cut(s)	7, 49
AfaI	GTAC	2 cut(s)	140, 485
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	174
AhlI	ACTAGT	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	7, 49
ApeKI	GCWGC	1 cut(s)	312
AsuC2I	CCSGG	2 cut(s)	134, 469
BbvI	GCAGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BcnI	CCSGG	2 cut(s)	134, 469
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	4 cut(s)	198, 206, 338, 453
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmcAI	AGTACT	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	134, 469
BmgBI	CACGTC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	134, 469
BmsI	GCATC	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	134, 469
BsaJI	CCNNGG	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	277, 307
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	2 cut(s)	277, 307
BseXI	GCAGC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	134, 468
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	12, 54, 225
BspACI	CCGC	3 cut(s)	366, 378, 399
BspPI	GGATC	2 cut(s)	7, 49
BsrDI	GCAATG	2 cut(s)	277, 307
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	3 cut(s)	12, 54, 225
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	188
BstKTI	GATC	3 cut(s)	15, 57, 228
BstMBI	GATC	3 cut(s)	12, 54, 225
BstSCI	CCNGG	2 cut(s)	132, 467
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	188
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	139, 484
CviJI	RGCY	4 cut(s)	35, 104, 202, 300
CviKI_1	RGCY	4 cut(s)	35, 104, 202, 300
CviQI	GTAC	2 cut(s)	139, 484
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	3 cut(s)	14, 56, 227
DpnII	GATC	3 cut(s)	12, 54, 225
FaiI	YATR	1 cut(s)	501
FaqI	GGGAC	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	4 cut(s)	198, 206, 338, 453
GluI	GCNGC	1 cut(s)	313
HapII	CCGG	2 cut(s)	134, 468
HgaI	GACGC	1 cut(s)	453
HincII	GTYRAC	2 cut(s)	118, 421
HindII	GTYRAC	2 cut(s)	118, 421
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	2 cut(s)	134, 468
Hpy166II	GTNNAC	2 cut(s)	118, 421
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	149, 229, 253
Hpy8I	GTNNAC	2 cut(s)	118, 421
Hpy99I	CGWCG	2 cut(s)	155, 254
HpyCH4IV	ACGT	4 cut(s)	177, 249, 391, 417
HpyCH4V	TGCA	5 cut(s)	270, 307, 315, 411, 450
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	4 cut(s)	177, 249, 391, 417
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	12, 54, 225
LpnPI	CCDG	2 cut(s)	147, 481
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	4 cut(s)	198, 206, 338, 453
MaeII	ACGT	4 cut(s)	177, 249, 391, 417
MaeIII	GTNAC	4 cut(s)	178, 245, 257, 368
MalI	GATC	3 cut(s)	14, 56, 227
MboI	GATC	3 cut(s)	12, 54, 225
MboII	GAAGA	2 cut(s)	137, 235
MfeI	CAATTG	1 cut(s)	352
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	2 cut(s)	183, 352
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	3 cut(s)	68, 172, 311
MseI	TTAA	5 cut(s)	9, 30, 420, 426, 474
MspI	CCGG	2 cut(s)	134, 468
MspR9I	CCNGG	2 cut(s)	134, 469
MunI	CAATTG	1 cut(s)	352
NciI	CCSGG	2 cut(s)	134, 469
NdeII	GATC	3 cut(s)	12, 54, 225
NmuCI	GTSAC	3 cut(s)	178, 245, 368
PkrI	GCNGC	1 cut(s)	314
Psp1406I	AACGTT	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	2 cut(s)	140, 485
RsaNI	GTAC	2 cut(s)	139, 484
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	5 cut(s)	9, 30, 420, 426, 474
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	12, 54, 225
ScaI	AGTACT	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	134, 469
SetI	ASST	4 cut(s)	180, 252, 394, 420
SfaNI	GCATC	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	2 cut(s)	183, 352
SsiI	CCGC	3 cut(s)	366, 378, 399
SspMI	CTAG	4 cut(s)	198, 206, 338, 453
StyD4I	CCNGG	2 cut(s)	132, 467
TaiI	ACGT	4 cut(s)	180, 252, 394, 420
TaqI	TCGA	5 cut(s)	117, 150, 164, 252, 361
TasI	AATT	2 cut(s)	183, 352
TatI	WGTACW	1 cut(s)	138
Tru1I	TTAA	5 cut(s)	9, 30, 420, 426, 474
Tru9I	TTAA	5 cut(s)	9, 30, 420, 426, 474
TseFI	GTSAC	3 cut(s)	178, 245, 368
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	3 cut(s)	178, 245, 368
TspDTI	ATGAA	3 cut(s)	16, 123, 177
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	4 cut(s)	198, 206, 338, 453
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.