Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017140

Physical Location & Seq

Genomic Coordinates Forward (+)

12997105 .. 12998156

Gene Structure 1052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCAACTTCTTCAAGCTCACCACCATTCTCTCCCTCATGGTTTCGGCTTTGCTCCTAGCCTCCCAATACCCTATGGCCTTCTCATCCGAGTTCGAGGGCGACGACGACGAGGAGTTGGAGGAGTACGTGATCGATGCCCCGAATCCGAACTTCAGATTAAGAGGCAGGTTCTTGGCCAGCATTATCAAGAAAGGTGCACACTGTGACGCCGTCAAGCACAACATCTGCAATGGGATTTCAGCAAACAACGGGACGAGCATTCTCAACTGCTGCAAGACTCATTGCCGTAACATTCTCGGAGACCGGAATAACTGCGGCAAGTGCGGGCACAAGTGCGAGTTTTCACAGCGTTGCTGTAATGGAAAGTGTACCTATGTTGCTTACAATCCCAACCACTGTGGCAAGTGTACTAGAAAGTGCTCGGCTGGGGTTAAATGTGAGTATGGATACTGTGGGTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0006950 GO:0006952 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009863 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010193 GO:0010337 GO:0010565 GO:0010817 GO:0010941 GO:0010942 GO:0014070 GO:0019216 GO:0019217 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0042221 GO:0042304 GO:0042493 GO:0042742 GO:0043207 GO:0044421 GO:0046677 GO:0046885 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080140 GO:0080141 GO:0080142 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stig1

Protein Analysis

156

Amino Acids

17.11

Weight (kDa)

8.31

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	67 - 155	2.2e-23	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0017140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53130
fragaria_vesca	FvH4_3g19820
malus_domestica	MD03G1228400.v1.1
prunus_persica	Prupe.4G180300_v2.0.a1 Prupe.4G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033251
rosa_laevigata	RLG00000033460
rosa_multiflora	Rmu_ssc0000299.1_g000017
rosa_roxburghii	Rroxscaffold_1G00046740
rosa_rugosa	Rorug05G0138100
rosa_samantha	Rh5AG229900 Rh5CG258800
rosa_wichuraiana	Rw5G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	2 cut(s)	318, 327
AcoI	YGGCCR	2 cut(s)	3, 177
AcuI	CTGAAG	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	210
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	128, 373, 412
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	2 cut(s)	202, 425
Alw26I	GTCTC	1 cut(s)	297
Alw44I	GTGCAC	1 cut(s)	198
AoxI	GGCC	3 cut(s)	3, 78, 177
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	13
BaeGI	GKGCMC	2 cut(s)	202, 333
BalI	TGGCCA	2 cut(s)	5, 179
Bbv12I	GWGCWC	2 cut(s)	202, 425
BbvI	GCAGC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	197, 273
BciVI	GTATCC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	2 cut(s)	59, 414
BfuAI	ACCTGC	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	2 cut(s)	274, 319
BlsI	GCNGC	2 cut(s)	275, 320
BmsI	GCATC	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	306
Bse3DI	GCAATG	2 cut(s)	238, 283
BseCI	ATCGAT	1 cut(s)	135
BseGI	GGATG	1 cut(s)	86
BseMI	GCAATG	2 cut(s)	238, 283
BseRI	GAGGAG	2 cut(s)	128, 137
BseSI	GKGCMC	2 cut(s)	202, 333
BseXI	GCAGC	1 cut(s)	260
BseYI	CCCAGC	1 cut(s)	428
BshFI	GGCC	3 cut(s)	5, 80, 179
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	202, 425
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	5, 80, 179
Bso31I	GGTCTC	1 cut(s)	297
Bsp1286I	GDGCHC	3 cut(s)	202, 333, 425
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	318, 327
BspANI	GGCC	3 cut(s)	5, 80, 179
BspDI	ATCGAT	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	297
BsrDI	GCAATG	2 cut(s)	238, 283
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	206, 401, 455
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	181, 329
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstSLI	GKGCMC	2 cut(s)	202, 333
BstV1I	GCAGC	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	443
BsuRI	GGCC	3 cut(s)	5, 80, 179
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	202, 397
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	181, 329
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	3 cut(s)	127, 372, 411
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	7 cut(s)	5, 19, 50, 62, 80, 179, 428
CviKI_1	RGCY	7 cut(s)	5, 19, 50, 62, 80, 179, 428
CviQI	GTAC	3 cut(s)	127, 372, 411
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DraIII	CACNNNGTG	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	3, 177
Eco31I	GGTCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	139
FaeI	CATG	1 cut(s)	43
FaiI	YATR	5 cut(s)	41, 77, 378, 447, 462
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	274, 319
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	274, 319
FspBI	CTAG	2 cut(s)	59, 414
GluI	GCNGC	2 cut(s)	274, 319
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	5, 80, 179
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	2 cut(s)	145, 280
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	3 cut(s)	200, 372, 411
Hpy188I	TCNGA	4 cut(s)	91, 150, 158, 302
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	3 cut(s)	200, 372, 411
Hpy99I	CGWCG	3 cut(s)	107, 110, 113
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	3 cut(s)	206, 401, 455
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	200, 231, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	154, 193, 320, 414
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	59, 414
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	206, 290
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	202, 333, 425
MlsI	TGGCCA	2 cut(s)	5, 179
MluNI	TGGCCA	2 cut(s)	5, 179
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	47, 73, 91, 106, 115, 158
Mox20I	TGGCCA	2 cut(s)	5, 179
MscI	TGGCCA	2 cut(s)	5, 179
MseI	TTAA	3 cut(s)	161, 435, 466
Msp20I	TGGCCA	2 cut(s)	5, 179
MspI	CCGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	145
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	275, 320
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	3 cut(s)	128, 373, 412
RsaNI	GTAC	3 cut(s)	127, 372, 411
SaqAI	TTAA	3 cut(s)	161, 435, 466
SatI	GCNGC	2 cut(s)	274, 319
Sau3AI	GATC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	274
SduI	GDGCHC	3 cut(s)	202, 333, 425
SetI	ASST	5 cut(s)	21, 132, 173, 199, 377
SfaNI	GCATC	1 cut(s)	127
SsiI	CCGC	2 cut(s)	318, 327
SspMI	CTAG	2 cut(s)	59, 414
TaaI	ACNGT	3 cut(s)	206, 401, 455
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	96, 135
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	3 cut(s)	161, 435, 466
Tru9I	TTAA	3 cut(s)	161, 435, 466
TscAI	CASTG	2 cut(s)	209, 404
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	206
TspRI	CASTG	2 cut(s)	209, 404
Tth111I	GACNNNGTC	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	198
XspI	CTAG	2 cut(s)	59, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.