Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017140

Physical Location & Seq

Genomic Coordinates Forward (+)

27538863 .. 27539541

Gene Structure 679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033460

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCCAACTTCCTGAAGCTCACCACCATTCTCTCCCTAATGGTTTCGGCTTTGCTACTAGCTTCGCAATACCCAATGGTATTCTCGTCCGAGCTCGAGGACGAAGACGACGAGGAGTACGTGCTCGATGCCCCTAATCCGAACTTCAGATCCAAAAGCAGGTTCTTGGCCAGCATTATCAAGAAAGGAGCGCATTGTGACCCCGTCAAGTACAACATCTGCAATGGGATTTCGGCAAACAATGGAACGAGCATTCTGCACTGCTGCAAGACTCATTGTCGTAACATTCTCGGAGACCGGAATAACTGCGGGAAGTGCGGGAGCAAGTGCAAGCAGGGACAGCTTTGCTGCAATGGAAGTTGTACGTATGTTGCTTACAACGCCAATCACTGTGGCAAGTGTGCTAGGAAGTGCTCGGCTGGGGTTAAATGTGAGTCTGGATACTGTGGGTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0006950 GO:0006952 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009863 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010193 GO:0010337 GO:0010565 GO:0010817 GO:0010941 GO:0010942 GO:0014070 GO:0019216 GO:0019217 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0042221 GO:0042304 GO:0042493 GO:0042742 GO:0043207 GO:0044421 GO:0046677 GO:0046885 GO:0046890 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080140 GO:0080141 GO:0080142 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stig1

Protein Analysis

153

Amino Acids

16.5

Weight (kDa)

8.45

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	65 - 152	1.2e-20	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53130
fragaria_vesca	FvH4_3g19820
malus_domestica	MD03G1228400.v1.1
prunus_persica	Prupe.4G180300_v2.0.a1 Prupe.4G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033251
rosa_laevigata	RLG00000033460
rosa_multiflora	Rmu_ssc0000299.1_g000017
rosa_roxburghii	Rroxscaffold_1G00046740
rosa_rugosa	Rorug05G0138100
rosa_samantha	Rh5AG229900 Rh5CG258800
rosa_wichuraiana	Rw5G021020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AciI	CCGC	2 cut(s)	309, 318
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	2 cut(s)	3, 168
AcuI	CTGAAG	2 cut(s)	35, 130
AfaI	GTAC	3 cut(s)	119, 212, 364
AfiI	CCNNNNNNNGG	1 cut(s)	159
AhdI	GACNNNNNGTC	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	4 cut(s)	19, 62, 94, 343
AluI	AGCT	4 cut(s)	19, 62, 94, 343
Alw21I	GWGCWC	3 cut(s)	96, 126, 416
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	3, 168
ApeKI	GCWGC	2 cut(s)	264, 348
AspLEI	GCGC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	95
BalI	TGGCCA	2 cut(s)	5, 170
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	3 cut(s)	96, 126, 416
BbvI	GCAGC	2 cut(s)	251, 335
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	59, 405
BfuAI	ACCTGC	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	2 cut(s)	265, 349
BlsI	GCNGC	2 cut(s)	266, 350
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	111
BsaAI	YACGTR	2 cut(s)	121, 366
BsaI	GGTCTC	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse3DI	GCAATG	2 cut(s)	229, 358
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	2 cut(s)	229, 358
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	251, 335
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	5, 170
BsiHKAI	GWGCWC	3 cut(s)	96, 126, 416
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	5, 170
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	96, 126, 416
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	2 cut(s)	309, 318
BspANI	GGCC	2 cut(s)	5, 170
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	229, 358
BssMI	GATC	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	392, 446
BstBAI	YACGTR	2 cut(s)	121, 366
BstC8I	GCNNGC	2 cut(s)	172, 332
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	152
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 340, 380
BstSNI	TACGTA	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	251, 335
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	5, 170
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	259, 388
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	172, 332
CfoI	GCGC	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	118, 211, 363
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviJI	RGCY	8 cut(s)	5, 19, 50, 62, 94, 170, 343, 419
CviKI_1	RGCY	8 cut(s)	5, 19, 50, 62, 94, 170, 343, 419
CviQI	GTAC	3 cut(s)	118, 211, 363
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
DriI	GACNNNNNGTC	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	3, 168
Eam1105I	GACNNNNNGTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	35, 130
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	96
FaiI	YATR	2 cut(s)	369, 453
FaqI	GGGAC	1 cut(s)	351
FauI	CCCGC	2 cut(s)	302, 311
Fnu4HI	GCNGC	2 cut(s)	265, 349
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	265, 349
FspBI	CTAG	2 cut(s)	59, 405
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	2 cut(s)	265, 349
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	5, 170
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	2 cut(s)	271, 434
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	13
Hpy188I	TCNGA	4 cut(s)	91, 141, 149, 293
Hpy188III	TCNNGA	3 cut(s)	13, 181, 438
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	392, 446
HpyCH4IV	ACGT	2 cut(s)	120, 365
HpyCH4V	TGCA	5 cut(s)	222, 259, 267, 330, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 340, 380
HpySE526I	ACGT	2 cut(s)	120, 365
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	188, 321
LpnPI	CCDG	7 cut(s)	26, 145, 184, 311, 320, 405, 423
Lsp1109I	GCAGC	2 cut(s)	251, 335
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	59, 405
MaeII	ACGT	2 cut(s)	120, 365
MaeIII	GTNAC	2 cut(s)	197, 281
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	3 cut(s)	96, 126, 416
MlsI	TGGCCA	2 cut(s)	5, 170
MluNI	TGGCCA	2 cut(s)	5, 170
MlyI	GAGTC	2 cut(s)	265, 443
MnlI	CCTC	2 cut(s)	91, 106
Mox20I	TGGCCA	2 cut(s)	5, 170
MscI	TGGCCA	2 cut(s)	5, 170
MseI	TTAA	2 cut(s)	426, 457
Msp20I	TGGCCA	2 cut(s)	5, 170
MspI	CCGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	315, 340, 380
NdeII	GATC	1 cut(s)	149
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 117
PctI	GAATGC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	266, 350
PleI	GAGTC	2 cut(s)	265, 442
PpsI	GAGTC	2 cut(s)	265, 442
Ppu21I	YACGTR	2 cut(s)	121, 366
Psp124BI	GAGCTC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	419
PspXI	VCTCGAGB	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	3 cut(s)	119, 212, 364
RsaNI	GTAC	3 cut(s)	118, 211, 363
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	426, 457
SatI	GCNGC	2 cut(s)	265, 349
Sau3AI	GATC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	265, 443
SduI	GDGCHC	3 cut(s)	96, 126, 416
SetI	ASST	7 cut(s)	21, 64, 96, 123, 164, 345, 368
SfaNI	GCATC	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	366
SsiI	CCGC	2 cut(s)	309, 318
SspMI	CTAG	2 cut(s)	59, 405
SstI	GAGCTC	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	392, 446
TaiI	ACGT	2 cut(s)	123, 368
TaqI	TCGA	2 cut(s)	96, 126
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	426, 457
Tru9I	TTAA	2 cut(s)	426, 457
TscAI	CASTG	2 cut(s)	266, 395
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	264, 348
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	2 cut(s)	266, 395
Tth111I	GACNNNGTC	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	95
XspI	CTAG	2 cut(s)	59, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.